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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Arolas, J.L."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Homo sapiens (9)
	Methanocaldococcus jannaschii DSM 2661 (6)
	Rhipicephalus bursa (5)
	Tannerella forsythia (5)
	Bos taurus (4)
	Hirudo medicinalis (3)
	Streptomyces caespitosus (3)
	Bacillus cereus biovar anthracis str. CI (2)
	Geobacillus thermoleovorans CCB_US3_UF5 (2)
	synthetic construct (2)

More...

Taxonomy

	Eukaryota (17)
	Bacteria (15)
	Archaea (7)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (35)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (11)
	2.0 - 2.5 (9)
	2.5 - 3.0 (6)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (21)
	2015 - 2019 (3)
	2020 - 2024 (6)

Enzyme Classification Name

Hydrolases (21)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Asymmetric (26)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Artifacts (6)
	Small proteins (7)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (1)

AllSelected

1 to 25 of 37 Structures

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1ZFI \| pdb_00001zfi	Download File View File

Solution structure of the leech carboxypeptidase inhibitor

Arolas, J.L., D'Silva, L., Popowicz, G.M., Aviles, F.X., Holak, T.A., Ventura, S.

(2005) Structure 13: 1193-1202

Released	2005-09-13
Method	SOLUTION NMR
Organisms	Hirudo medicinalis
Macromolecule	Metallocarboxypeptidase inhibitor (protein)

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1ZFL \| pdb_00001zfl	Download File View File

Solution structure of III-A, the major intermediate in the oxidative folding of leech carboxypeptidase inhibitor

Arolas, J.L., D'Silva, L., Popowicz, G.M., Aviles, F.X., Holak, T.A., Ventura, S.

(2005) Structure 13: 1193-1202

Released	2005-09-13
Method	SOLUTION NMR
Organisms	Hirudo medicinalis
Macromolecule	Metallocarboxypeptidase inhibitor (protein)

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1ZLH \| pdb_00001zlh	Download File View File

Crystal structure of the tick carboxypeptidase inhibitor in complex with bovine carboxypeptidase A

Arolas, J.L., Popowicz, G.M., Lorenzo, J., Sommerhoff, C.P., Huber, R., Aviles, F.X., Holak, T.A.

(2005) J Mol Biology 350: 489-498

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus Rhipicephalus bursa
Macromolecule	Carboxypeptidase A1 (protein) carboxypeptidase inhibitor (protein)
Unique Ligands	ZN

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1ZLI \| pdb_00001zli	Download File View File

Crystal structure of the tick carboxypeptidase inhibitor in complex with human carboxypeptidase B

Arolas, J.L., Popowicz, G.M., Lorenzo, J., Sommerhoff, C.P., Huber, R., Aviles, F.X., Holak, T.A.

(2005) J Mol Biology 350: 489-498

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens Rhipicephalus bursa
Macromolecule	Carboxypeptidase B (protein) carboxypeptidase inhibitor (protein)
Unique Ligands	ZN

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2ABZ \| pdb_00002abz	Download File View File

Crystal structure of C19A/C43A mutant of leech carboxypeptidase inhibitor in complex with bovine carboxypeptidase A

Arolas, J.L., Popowicz, G.M., Bronsoms, S., Aviles, F.X., Huber, R., Holak, T.A., Ventura, S.

(2005) J Mol Biology 352: 961-975

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Bos taurus Hirudo medicinalis
Macromolecule	Carboxypeptidase A1 (protein) Metallocarboxypeptidase inhibitor (protein)
Unique Ligands	ZN

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2XS3 \| pdb_00002xs3	Download File View File

Structure of karilysin catalytic MMP domain

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR-SER (protein)
Unique Ligands	TRS, ZN

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2XS4 \| pdb_00002xs4	Download File View File

Structure of karilysin catalytic MMP domain in complex with magnesium

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR (protein)
Unique Ligands	CL, MG, ZN

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3D4U \| pdb_00003d4u	Download File View File

Bovine thrombin-activatable fibrinolysis inhibitor (TAFIa) in complex with tick-derived carboxypeptidase inhibitor.

Sanglas, L., Valnickova, Z., Arolas, J.L., Pallares, I., Guevara, T., Sola, M., Kristensen, T., Enghild, J.J., Aviles, F.X., Gomis-Ruth, F.X.

(2008) Mol Cell 31: 598-606

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus Rhipicephalus bursa
Macromolecule	Carboxypeptidase B2 (protein) Carboxypeptidase inhibitor (protein)
Unique Ligands	ACT, SO4, ZN

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3FJU \| pdb_00003fju	Download File View File

Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase A1

Sanglas, L., Aviles, F.X., Huber, R., Gomis-Ruth, F.X., Arolas, J.L.

(2009) Proc Natl Acad Sci U S A 106: 1743-1747

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ascaris suum Homo sapiens
Macromolecule	Carboxypeptidase A inhibitor (protein) Carboxypeptidase A1 (protein)
Unique Ligands	ACT, CAC, NA, ZN

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3LMS \| pdb_00003lms	Download File View File

Structure of human activated thrombin-activatable fibrinolysis inhibitor, TAFIa, in complex with tick-derived funnelin inhibitor, TCI.

Sanglas, L., Arolas, J.L., Valnickova, Z., Aviles, F.X., Enghild, J.J., Gomis-Ruth, F.X.

(2010) J Thromb Haemost 8: 1056-1065

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Rhipicephalus bursa
Macromolecule	Carboxypeptidase B2 (protein) Carboxypeptidase inhibitor (protein)
Unique Ligands	CA, CL, GLY, GOL, K, ZN

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3MN8 \| pdb_00003mn8	Download File View File

Structure of Drosophila melanogaster carboxypeptidase D isoform 1B short

Tanco, S., Arolas, J.L., Guevara, T., Lorenzo, J., Aviles, F.X., Gomis-Ruth, F.X.

(2010) J Mol Biology 401: 465-477

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	LP15968p (protein)
Unique Ligands	GEM, GOL, NAG, ZN

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3OSL \| pdb_00003osl	Download File View File

Structure of bovine thrombin-activatable fibrinolysis inhibitor in complex with tick carboxypeptidase inhibitor

Valnickova, Z., Sanglas, L., Arolas, J.L., Petersen, S.V., Schar, C., Otzen, D., Aviles, F.X., Gomis-Ruth, F.X., Enghild, J.J.

(2010) J Biological Chem 285: 38243-38250

Released	2010-09-29
Method	X-RAY DIFFRACTION 6 Å
Organisms	Bos taurus Rhipicephalus bursa
Macromolecule	Carboxypeptidase B2 (protein) Carboxypeptidase inhibitor (protein)
Unique Ligands	ZN

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3P24 \| pdb_00003p24	Download File View File

Structure of profragilysin-3 from Bacteroides fragilis

Goulas, T., Arolas, J.L., Gomis-Ruth, F.X.

(2011) Proc Natl Acad Sci U S A 108: 1856-1861

Released	2010-12-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides fragilis
Macromolecule	BFT-3 (protein)
Unique Ligands	AZI, GOL, PG4, ZN

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3SSB \| pdb_00003ssb	Download File View File

Structure of Insect Metalloproteinase Inhibitor in Complex with Thermolysin

Arolas, J.L., Botelho, T.O., Vilcinskas, A., Gomis-Ruth, F.X.

(2011) Angew Chem Int Ed Engl 50: 10357-10360

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus thermoproteolyticus Galleria mellonella
Macromolecule	Inducible metalloproteinase inhibitor protein (protein) Thermolysin (protein)
Unique Ligands	CA, GOL, NA, ZN

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4GWM \| pdb_00004gwm	Download File View File

Crystal structure of human promeprin beta

Arolas, J.L., Broder, C., Jefferson, T., Guevara, T., Sterchi, E.E., Bode, W., Stocker, W., Becker-Pauly, C., Gomis-Ruth, F.X.

(2012) Proc Natl Acad Sci U S A 109: 16131-16136

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Meprin A subunit beta (protein)
Unique Ligands	CL, GOL, NA, NAG, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4GWN \| pdb_00004gwn	Download File View File

Crystal structure of human mature meprin beta

Arolas, J.L., Broder, C., Jefferson, T., Guevara, T., Sterchi, E.E., Bode, W., Stocker, W., Becker-Pauly, C., Gomis-Ruth, F.X.

(2012) Proc Natl Acad Sci U S A 109: 16131-16136

Released	2012-09-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Meprin A subunit beta (protein)
Unique Ligands	CD, GOL, NA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4HE5 \| pdb_00004he5	Download File View File

Crystal structure of the selenomethionine variant of the C-terminal domain of Geobacillus thermoleovorans putative U32 peptidase

Trillo-Muyo, S., Jasilionis, A., Domagalski, M.J., Chruszcz, M., Minor, W., Kuisiene, N., Arolas, J.L., Sola, M., Gomis-Ruth, F.X.

(2013) Acta Crystallogr D Biol Crystallogr 69: 464-470

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Geobacillus thermoleovorans CCB_US3_UF5
Macromolecule	Peptidase family U32 (protein)
Unique Ligands	SO4

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4HE6 \| pdb_00004he6	Download File View File

Crystal structure of the C-terminal domain of Geobacillus thermoleovorans putative U32 peptidase

Trillo-Muyo, S., Jasilionis, A., Domagalski, M.J., Chruszcz, M., Minor, W., Kuisiene, N., Arolas, J.L., Sola, M., Gomis-Ruth, F.X.

(2013) Acta Crystallogr D Biol Crystallogr 69: 464-470

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Geobacillus thermoleovorans CCB_US3_UF5
Macromolecule	Peptidase family U32 (protein)
Unique Ligands	ACT, UNX

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4HWX \| pdb_00004hwx	Download File View File

Crystal structure of Streptomyces caespitosus sermetstatin

Trillo-Muyo, S., Martinez-Rodriguez, S., Arolas, J.L., Gomis-Ruth, F.X.

(2013) Chem Sci 4: 791-797

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces caespitosus
Macromolecule	Neutral proteinase inhibitor ScNPI (protein)
Unique Ligands	ACT, GOL

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4HX2 \| pdb_00004hx2	Download File View File

Crystal structure of Streptomyces caespitosus sermetstatin in complex with Bacillus licheniformis subtilisin

Trillo-Muyo, S., Martinez-Rodriguez, S., Arolas, J.L., Gomis-Ruth, F.X.

(2013) Chem Sci 4: 791-797

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus licheniformis Streptomyces caespitosus
Macromolecule	KerA (protein) Neutral proteinase inhibitor ScNPI (protein)
Unique Ligands	1AX, ACT, CA, CAC, CL, GOL, IPA, K, PO4, ZN

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4HX3 \| pdb_00004hx3	Download File View File

Crystal structure of Streptomyces caespitosus sermetstatin in complex with S. caespitosus snapalysin

Trillo-Muyo, S., Martinez-Rodriguez, S., Arolas, J.L., Gomis-Ruth, F.X.

(2013) Chem Sci 4: 791-797

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces caespitosus
Macromolecule	Extracellular small neutral protease (protein) Neutral proteinase inhibitor ScNPI (protein)
Unique Ligands	GOL, ZN

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4JIU \| pdb_00004jiu	Download File View File

Crystal structure of the metallopeptidase zymogen of Pyrococcus abyssi abylysin

Lopez-Pelegrin, M., Cerda-Costa, N., Martinez-Jimenez, F., Cintas-Pedrola, A., Canals, A., Peinado, J.R., Marti-Renom, M.A., Lopez-Otin, C., Arolas, J.L., Gomis-Ruth, F.X.

(2013) J Biological Chem 288: 21279-21294

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Pyrococcus abyssi GE5
Macromolecule	Proabylysin (protein)
Unique Ligands	GOL, ZN

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4JIX \| pdb_00004jix	Download File View File

Crystal structure of the metallopeptidase zymogen of Methanocaldococcus jannaschii jannalysin

Lopez-Pelegrin, M., Cerda-Costa, N., Martinez-Jimenez, F., Cintas-Pedrola, A., Canals, A., Peinado, J.R., Marti-Renom, M.A., Lopez-Otin, C., Arolas, J.L., Gomis-Ruth, F.X.

(2013) J Biological Chem 288: 21279-21294

Released	2013-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Projannalysin (protein)
Unique Ligands	CL, GOL, SO4, TRS, ZN

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4QHF \| pdb_00004qhf	Download File View File

Crystal structure of Methanocaldococcus jannaschii monomeric selecase

Lopez-pelegrin, M., Cerda-costa, N., Cintas-pedrola, A., Herranz-trillo, F., Bernado, P., Peinado, J.R., Arolas, J.L., Gomis-ruth, F.X.

(2014) Angew Chem Int Ed Engl 53: 10624-10630

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Uncharacterized protein MJ1213 (protein)
Unique Ligands	GOL, NI

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4QHG \| pdb_00004qhg	Download File View File

Crystal structure of Methanocaldococcus jannaschii dimeric selecase

Lopez-pelegrin, M., Cerda-costa, N., Cintas-pedrola, A., Herranz-trillo, F., Bernado, P., Peinado, J.R., Arolas, J.L., Gomis-ruth, F.X.

(2014) Angew Chem Int Ed Engl 53: 10624-10630

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Uncharacterized protein MJ1213 (protein)
Unique Ligands	GOL, ZN

1 to 25 of 37 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZFI | pdb_00001zfi

1ZFL | pdb_00001zfl

1ZLH | pdb_00001zlh

1ZLI | pdb_00001zli

2ABZ | pdb_00002abz

2XS3 | pdb_00002xs3

2XS4 | pdb_00002xs4

3D4U | pdb_00003d4u

3FJU | pdb_00003fju

3LMS | pdb_00003lms

3MN8 | pdb_00003mn8

3OSL | pdb_00003osl

3P24 | pdb_00003p24

3SSB | pdb_00003ssb

4GWM | pdb_00004gwm

4GWN | pdb_00004gwn

4HE5 | pdb_00004he5

4HE6 | pdb_00004he6

4HWX | pdb_00004hwx

4HX2 | pdb_00004hx2

4HX3 | pdb_00004hx3

4JIU | pdb_00004jiu

4JIX | pdb_00004jix

4QHF | pdb_00004qhf

4QHG | pdb_00004qhg