RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Bravo, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Homo sapiens (19)
	Escherichia coli (7)
	Saccharomyces cerevisiae S288C (5)
	Thermochaetoides thermophila (3)
	Saccharomyces cerevisiae (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Tequatrovirus T4 (2)
	Enterococcus faecium (1)
	Macropsychanthus grandiflorus (1)
	Rattus norvegicus (1)

More...

Taxonomy

	Eukaryota (30)
	Bacteria (9)
	Duplodnaviria (2)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (38)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (41)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (12)
	2.0 - 2.5 (11)
	2.5 - 3.0 (9)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (12)
	2005 - 2009 (8)
	2010 - 2014 (6)
	2015 - 2019 (11)
	2020 - 2024 (2)

Enzyme Classification Name

	Oxidoreductases (7)
	Transferases (5)
	Ligases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (27)
	Dihedral (10)
	Cyclic (6)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a/b) (8)
	Multi-domain proteins (alpha and beta) (7)
	Alpha and beta proteins (a+b) (6)
	Artifacts (6)
	All alpha proteins (1)

AllSelected

1 to 25 of 41 Structures

Page 1 of 2

Sort by

Explore in 3D

1B7B \| pdb_00001b7b	Download File View File

Carbamate kinase from Enterococcus faecalis

Marina, A., Alzari, P.M., Bravo, J., Uriarte, M., Barcelona, B., Fita, I., Rubio, V.

(1999) Protein Sci 8: 934-940

Released	2000-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	CARBAMATE KINASE (protein)
Unique Ligands	SO4

Explore in 3D

1BQU \| pdb_00001bqu	Download File View File

CYTOKYNE-BINDING REGION OF GP130

Bravo, J., Staunton, D., Heath, J.K., Jones, E.Y.

(1998) EMBO J 17: 1665-1674

Released	1998-08-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GP130) (protein)
Unique Ligands	GOL, SO4

Explore in 3D

1E50 \| pdb_00001e50	Download File View File

AML1/CBFbeta complex

Warren, A.J., Bravo, J., Williams, R.L., Rabbits, T.H.

(2000) EMBO J 19: 3004

Released	2001-07-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CORE-BINDING FACTOR ALPHA SUBUNIT (protein) CORE-BINDING FACTOR CBF-BETA (protein)

Explore in 3D

1EVS \| pdb_00001evs	Download File View File

CRYSTAL STRUCTURE OF HUMAN ONCOSTATIN M

Deller, M.C., Hudson, K.R., Ikemizu, S., Bravo, J., Jones, E.Y., Heath, J.K.

(2000) Structure 8: 863-874

Released	2000-09-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ONCOSTATIN M (protein)

Explore in 3D

1GG9 \| pdb_00001gg9	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, HIS128ASN VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

Explore in 3D

1GGE \| pdb_00001gge	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, NATIVE STRUCTURE AT 1.9 A RESOLUTION.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (CATALASE HPII) (protein)
Unique Ligands	HDD

Explore in 3D

1GGF \| pdb_00001ggf	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, VARIANT HIS128ASN, COMPLEX WITH HYDROGEN PEROXIDE.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM, PEO

Explore in 3D

1GGH \| pdb_00001ggh	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, HIS128ALA VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

Explore in 3D

1GGJ \| pdb_00001ggj	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, ASN201ALA VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HDD

Explore in 3D

1GGK \| pdb_00001ggk	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, ASN201HIS VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

Explore in 3D

1H6H \| pdb_00001h6h	Download File View File

Structure of the PX domain from p40phox bound to phosphatidylinositol 3-phosphate

Karathanassis, D., Bravo, J., Pacold, M., Perisic, O., Williams, R.L.

(2001) Mol Cell 8: 829

Released	2001-11-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL CYTOSOL FACTOR 4 (protein)
Unique Ligands	GOL, PIB

Explore in 3D

1H9D \| pdb_00001h9d	Download File View File

Aml1/cbf-beta/dna complex

Bravo, J., Warren, A.J.

(2001) Nat Struct Biol 8: 371

Released	2001-03-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CORE-BINDING FACTOR ALPHA SUBUNIT1 (protein) CORE-BINDING FACTOR CBF-BETA (protein) DNA (5'-(CPAPAPCPCPGPCPAPAPC)-3') (nucleic acid) DNA (5'-(GPTPTPGPCPGPGPTPTPG)-3') (nucleic acid)

Explore in 3D

1IPH \| pdb_00001iph	Download File View File

STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI

Bravo, J., Loewen, P.C., Fita, I.

(1995) Structure 3: 491-502

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

Explore in 3D

1O7K \| pdb_00001o7k	Download File View File

human p47 PX domain complex with sulphates

Karathanassis, D., Bravo, J., Perisic, O., Pacold, C.M., Williams, R.L.

(2002) EMBO J 21: 5057

Released	2002-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL CYTOSOL FACTOR 1 (protein)
Unique Ligands	SO4

Explore in 3D

2AK5 \| pdb_00002ak5	Download File View File

beta PIX-SH3 complexed with a Cbl-b peptide

Jozic, D., Cardenes, N., Deribe, Y.L., Moncalian, G., Hoeller, D., Groemping, Y., Dikic, I., Rittinger, K., Bravo, J.

(2005) Nat Struct Mol Biol 12: 972-979

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	8-residue peptide from a signal transduction protein CBL-B (protein) Rho guanine nucleotide exchange factor 7 (protein)

Explore in 3D

2BZ8 \| pdb_00002bz8	Download File View File

N-terminal Sh3 domain of CIN85 bound to Cbl-b peptide

Cardenes, N., Moncalian, G., Bravo, J.

(2005) Nat Struct Mol Biol 12: 972

Released	2005-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SH3-DOMAIN KINASE BINDING PROTEIN 1 (protein) SIGNAL TRANSDUCTION PROTEIN CBL-B SH3-BINDING PROTEIN CBL-B, RING FINGER PROTEIN 56, CBL-B (protein)
Unique Ligands	NA

Explore in 3D

2IWL \| pdb_00002iwl	Download File View File

Structure of the PX Domain of Phosphoinositide 3-Kinase-C2alpha

Karathanassis, D., Bravo, J., Williams, R.L.

(2006) J Biological Chem 281: 39396

Released	2006-10-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 3-KINASE C2 DOMAIN-CONTAINING ALPHA POLYPEPTIDE (protein)
Unique Ligands	SO4

Explore in 3D

2J6F \| pdb_00002j6f	Download File View File

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG) BOUND TO CBL-B PEPTIDE

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) E3 UBIQUITIN-PROTEIN LIGASE CBL-B (protein)

Explore in 3D

2J6K \| pdb_00002j6k	Download File View File

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG)

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein)
Unique Ligands	NA

Explore in 3D

2J6O \| pdb_00002j6o	Download File View File

ATYPICAL POLYPROLINE RECOGNITION BY THE CMS N-TERMINAL SH3 DOMAIN. CMS:CD2 HETEROTRIMER

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) T-CELL SURFACE ANTIGEN CD2 (protein)

Explore in 3D

2J7I \| pdb_00002j7i	Download File View File

ATYPICAL POLYPROLINE RECOGNITION BY THE CMS N-TERMINAL SH3 DOMAIN. CMS:CD2 HETERODIMER

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-11-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) T-CELL SURFACE ANTIGEN CD2 (protein)

Explore in 3D

2M7Q \| pdb_00002m7q	Download File View File

Solution structure of TAX1BP1 UBZ1+2

Ceregido, M.A., Spinola Amilibia, M., Buts, L., Bravo, J., van Nuland, N.A.J.

(2014) J Mol Biology 426: 674-690

Released	2013-12-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tax1-binding protein 1 (protein)
Unique Ligands	ZN

Explore in 3D

2XUS \| pdb_00002xus	Download File View File

Crystal Structure of the BRMS1 N-terminal region

Spinola-Amilibia, M., Rivera, J., Ortiz-Lombardia, M., Romero, A., Neira, J.L., Bravo, J.

(2011) J Mol Biology 411: 1114

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.912 Å
Organisms	Homo sapiens
Macromolecule	BREAST CANCER METASTASIS-SUPPRESSOR 1 (protein)
Unique Ligands	CL, SO4

Explore in 3D

2YDL \| pdb_00002ydl	Download File View File

Crystal structure of SH3C from CIN85

Bravo, J., Cardenes, N.

(2013) PLoS One 8: 73018

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	SH3 DOMAIN-CONTAINING KINASE-BINDING PROTEIN 1 (protein)

Explore in 3D

3CYJ \| pdb_00003cyj	Download File View File

Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus

Bonanno, J.B., Freeman, J., Bain, K.T., Zhang, F., Bravo, J., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rubrobacter xylanophilus DSM 9941
Macromolecule	Mandelate racemase/muconate lactonizing enzyme-like protein (protein)
Unique Ligands	GOL, NA

1 to 25 of 41 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B7B | pdb_00001b7b

1BQU | pdb_00001bqu

1E50 | pdb_00001e50

1EVS | pdb_00001evs

1GG9 | pdb_00001gg9

1GGE | pdb_00001gge

1GGF | pdb_00001ggf

1GGH | pdb_00001ggh

1GGJ | pdb_00001ggj

1GGK | pdb_00001ggk

1H6H | pdb_00001h6h

1H9D | pdb_00001h9d

1IPH | pdb_00001iph

1O7K | pdb_00001o7k

2AK5 | pdb_00002ak5

2BZ8 | pdb_00002bz8

2IWL | pdb_00002iwl

2J6F | pdb_00002j6f

2J6K | pdb_00002j6k

2J6O | pdb_00002j6o

2J7I | pdb_00002j7i

2M7Q | pdb_00002m7q

2XUS | pdb_00002xus

2YDL | pdb_00002ydl

3CYJ | pdb_00003cyj