RCSB PDB: Search

1SIJ \| pdb_00001sij	Download File View File

Crystal structure of the Aldehyde Dehydrogenase (a.k.a. AOR or MOP) of Desulfovibrio gigas covalently bound to [AsO3]-

Boer, D.R., Thapper, A., Brondino, C.D., Romao, M.J., Moura, J.J.G.

(2004) J Am Chem Soc 126: 8614-8615

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	Aldehyde oxidoreductase (protein)
Unique Ligands	AST, CL, FES, MG, PCD

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2JIM \| pdb_00002jim	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J.G., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	MGD, MO, SF4, UNX

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2JIO \| pdb_00002jio	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J.G., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	MGD, MO, SF4, UNX

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2JIP \| pdb_00002jip	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J.G., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	MGD, MO, SF4, UNX

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2JIQ \| pdb_00002jiq	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J.G., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	MGD, MO, NO2, NO3, SF4, UNX

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2JIR \| pdb_00002jir	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J.G., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	CYN, MGD, MO, NO2, SF4

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2V3V \| pdb_00002v3v	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	LCP, MGD, MO, SF4, UNX

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2V45 \| pdb_00002v45	Download File View File

A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand

Najmudin, S., Gonzalez, P.J., Trincao, J., Coelho, C., Mukhopadhyay, A., Romao, C.C., Moura, I., Moura, J.J., Brondino, C.D., Romao, M.J.

(2008) J Biol Inorg Chem 13: 737

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Desulfovibrio desulfuricans
Macromolecule	PERIPLASMIC NITRATE REDUCTASE (protein)
Unique Ligands	LCP, MGD, MO, SF4, UNX

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8RU9 \| pdb_00008ru9	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 1 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.69 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8RUR \| pdb_00008rur	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 2 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.38 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-08-07
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8RYJ \| pdb_00008ryj	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [2.07 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8RYR \| pdb_00008ryr	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 4 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [2.76 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8RYU \| pdb_00008ryu	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [6.9 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8RYV \| pdb_00008ryv	Download File View File

MSOX movie series dataset 10 (11.5 MGy) for nitrite bound BrJNiR (Cu containing nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 at pH 8.

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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8S0W \| pdb_00008s0w	Download File View File

High pH (8.0) as-isolated MSOX movie series dataset 1 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.35 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S2Q \| pdb_00008s2q	Download File View File

High pH (8.0) as-isolated MSOX movie series dataset 2 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.7 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S5X \| pdb_00008s5x	Download File View File

High pH (8.0) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [3.5 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S5Y \| pdb_00008s5y	Download File View File

High pH (8.0) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [14 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S63 \| pdb_00008s63	Download File View File

Low pH (5.5) as-isolated MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.71 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S64 \| pdb_00008s64	Download File View File

Low pH (5.5) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [5.7 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, SO4
Unique branched monosaccharides	FRU, GLC

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8S68 \| pdb_00008s68	Download File View File

Low pH (5.5) as-isolated MSOX movie series dataset 20 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [11.4 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, FRU, GLC, SO4

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8S69 \| pdb_00008s69	Download File View File

Low pH (5.5) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [22.8 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, SO4
Unique branched monosaccharides	FRU, GLC

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9EVM \| pdb_00009evm	Download File View File

High pH (8.0) nitrite-bound MSOX movie series dataset 30 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [20.7 MGy]

Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.

(2024) J Mol Biology 436: 168706-168706

Released	2024-07-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium sp.
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, NO2, SO4
Unique branched monosaccharides	FRU, GLC

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SIJ | pdb_00001sij

2JIM | pdb_00002jim

2JIO | pdb_00002jio

2JIP | pdb_00002jip

2JIQ | pdb_00002jiq

2JIR | pdb_00002jir

2V3V | pdb_00002v3v

2V45 | pdb_00002v45

8RU9 | pdb_00008ru9

8RUR | pdb_00008rur

8RYJ | pdb_00008ryj

8RYR | pdb_00008ryr

8RYU | pdb_00008ryu

8RYV | pdb_00008ryv

8S0W | pdb_00008s0w

8S2Q | pdb_00008s2q

8S5X | pdb_00008s5x

8S5Y | pdb_00008s5y

8S63 | pdb_00008s63

8S64 | pdb_00008s64

8S68 | pdb_00008s68

8S69 | pdb_00008s69

9EVM | pdb_00009evm