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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Carrascosa, J.L."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Escherichia phage T7 (13)
	Influenza A virus (2)
	human gammaherpesvirus 4 (2)
	Penicillium chrysogenum virus (isolate Caston) (1)
	Rabbit hemorrhagic disease virus (1)
	Rosellinia necatrix quadrivirus 1 (1)
	Salasvirus phi29 (1)

Taxonomy

	Duplodnaviria (16)
	Riboviria (5)

Experimental Method

	ELECTRON MICROSCOPY (17)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (21)
	RNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (9)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (9)
	2015 - 2019 (7)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (2)
	Lyases (1)

Symmetry Type

	Cyclic (15)
	Asymmetric (2)
	Icosahedral (4)

SCOP Classification

Multi-domain proteins (alpha and beta) (1)

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1 to 21 of 21 Structures

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1H5W \| pdb_00001h5w	Download File View File

2.1A Bacteriophage Phi-29 Connector

Guasch, A., Pous, J., Ibarra, B., Gomis-Ruth, F.X., Valpuesta, J.M., Sousa, N., Carrascosa, J.L., Coll, M.

(2002) J Mol Biology 315: 663

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)
Unique Ligands	MPD

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2WFS \| pdb_00002wfs	Download File View File

Fitting of influenza virus NP structure into the 9-fold symmetryzed cryoEM reconstruction of an active RNP particle.

Coloma, R., Valpuesta, J.M., Arranz, R., Carrascosa, J.L., Ortin, J., Martin-Benito, J.

(2009) PLoS Pathog 5: 00491

Released	2009-07-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Influenza A virus
Macromolecule	NUCLEOPROTEIN (protein)

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2XVR \| pdb_00002xvr	Download File View File

Phage T7 empty mature head shell

Ionel, A., Velazquez-Muriel, J.A., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234

Released	2010-12-01
Method	ELECTRON MICROSCOPY 10.8 Å
Organisms	Escherichia phage T7
Macromolecule	MAJOR CAPSID PROTEIN 10A (protein)

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3IZG \| pdb_00003izg	Download File View File

Bacteriophage T7 prohead shell EM-derived atomic model

Ionel, A., Velazquez-Muriel, J.A., Agirrezabala, X., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234-242

Released	2010-11-17
Method	ELECTRON MICROSCOPY 10.9 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3J3I \| pdb_00003j3i	Download File View File

Penicillium chrysogenum virus (PcV) capsid structure

Luque, D., Gomez-Blanco, J., Garriga, D., Brilot, A., Gonzalez, J.M., Havens, W.H., Carrascosa, J.L., Trus, B.L., Verdaguer, N., Grigorieff, N., Ghabrial, S.A., Caston, J.R.

(2014) Proc Natl Acad Sci U S A 111: 7641-7646

Released	2014-05-14
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Penicillium chrysogenum virus (isolate Caston)
Macromolecule	Capsid protein (protein)

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3J4A \| pdb_00003j4a	Download File View File

Structure of gp8 connector protein

Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.

(2013) J Biological Chem 288: 26290-26299

Released	2013-08-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia phage T7
Macromolecule	Head-to-tail joining protein (protein)

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3J4B \| pdb_00003j4b	Download File View File

Structure of T7 gatekeeper protein (gp11)

Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.

(2013) J Biological Chem 288: 26290-26299

Released	2013-08-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia phage T7
Macromolecule	Tail tubular protein A (protein)

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3ZUE \| pdb_00003zue	Download File View File

Rabbit Hemorrhagic Disease Virus (RHDV)capsid protein

Luque, D., Gonzalez, J.M., Gomez-Blanco, J., Marabini, R., Chichon, J., Mena, I., Angulo, I., Carrascosa, J.L., Verdaguer, N., Trus, B.L., Barcena, J., Caston, J.R.

(2012) J Virol 86: 6470

Released	2012-05-23
Method	ELECTRON MICROSCOPY 10.3 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	CAPSID STRUCTURAL PROTEIN VP60 (protein)

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4BBL \| pdb_00004bbl	Download File View File

Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.

Arranz, R., Coloma, R., Chichon, F.J., Conesa, J.J., Carrascosa, J.L., Valpuesta, J.M., Ortin, J., Martin-Benito, J.

(2012) Science 338: 1634

Released	2012-12-05
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Influenza A virus
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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4BIJ \| pdb_00004bij	Download File View File

Threading model of T7 large terminase

Dauden, M.I., Martin-Benito, J., Sanchez-Ferrero, J.C., Pulido-Cid, M., Valpuesta, J.M., Carrascosa, J.L.

(2013) J Biological Chem 288: 16998

Released	2013-05-08
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Escherichia phage T7
Macromolecule	DNA MATURASE B (protein)

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4BIL \| pdb_00004bil	Download File View File

Threading model of the T7 large terminase within the gp8gp19 complex

Dauden, M.I., Martin-Benito, J., Sanchez-Ferrero, J.C., Pulido-Cid, M., Valpuesta, J.M., Carrascosa, J.L.

(2013) J Biological Chem 288: 16998

Released	2013-05-08
Method	ELECTRON MICROSCOPY 29 Å
Organisms	Escherichia phage T7
Macromolecule	DNA MATURASE B (protein)

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5ND1 \| pdb_00005nd1	Download File View File

Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus

Mata, C.P., Luque, D., Gomez Blanco, J., Rodriguez, J.M., Suzuki, N., Ghabrial, S.A., Carrascosa, J.L., Trus, B.L., Caston, J.R.

(2017) PLoS Pathog 13: e1006755-e1006755

Released	2017-11-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Rosellinia necatrix quadrivirus 1
Macromolecule	Capsid protein (protein)

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6QWP \| pdb_00006qwp	Download File View File

Crystal structure of T7 bacteriophage portal protein, 13mer, closed valve

Fabrega-Ferrer, M., Cuervo, A., Machon, C., Fernandez, F.J., Perez-Luque, R., Pous, J., Vega, M.C., Carrascosa, J.L., Coll, M.

(2019) Nat Commun 10: 3746-3746

Released	2019-09-04
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia phage T7
Macromolecule	Portal protein (protein)

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6QX5 \| pdb_00006qx5	Download File View File

Crystal structure of T7 bacteriophage portal protein, 12mer, closed valve

Fabrega-Ferrer, M., Cuervo, A., Machon, C., Fernandez, F.J., Perez-Luque, R., Pous, J., Vega, M.C., Carrascosa, J.L., Coll, M.

(2019) Nat Commun 10: 3746-3746

Released	2019-09-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia phage T7
Macromolecule	Portal protein (protein)

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6QXM \| pdb_00006qxm	Download File View File

Cryo-EM structure of T7 bacteriophage portal protein, 12mer, open valve

Fabrega-Ferrer, M., Cuervo, A., Machon, C., Fernandez, F.J., Perez-Luque, R., Pous, J., Vega, M.C., Carrascosa, J.L., Coll, M.

(2019) Nat Commun 10: 3746-3746

Released	2019-09-04
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia phage T7
Macromolecule	Portal protein (protein)

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6R21 \| pdb_00006r21	Download File View File

Cryo-EM structure of T7 bacteriophage fiberless tail complex

Cuervo, A., Fabrega-Ferrer, M., Machon, C., Conesa, J.J., Perez-Ruiz, M., Coll, M., Carrascosa, J.L.

(2019) Nat Commun 10: 3746-3746

Released	2019-09-04
Method	ELECTRON MICROSCOPY 3.33 Å
Organisms	Escherichia phage T7
Macromolecule	Portal protein (protein) Tail tubular protein gp11 (protein) Tail tubular protein gp12 (protein)

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6RVR \| pdb_00006rvr	Download File View File

Atomic structure of the Epstein-Barr portal, structure I

Machon, C., Fabrega-Ferrer, M., Zhou, D., Cuervo, A., Carrascosa, J.L., Stuart, D.I., Coll, M.

(2019) Nat Commun 10: 3891-3891

Released	2019-09-18
Method	ELECTRON MICROSCOPY 3.46 Å
Organisms	human gammaherpesvirus 4
Macromolecule	Portal protein (protein)

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6RVS \| pdb_00006rvs	Download File View File

Atomic structure of the Epstein-Barr portal, structure II

Machon, C., Fabrega-Ferrer, M., Zhou, D., Cuervo, A., Carrascosa, J.L., Stuart, D.I., Coll, M.

(2019) Nat Commun 10: 3891-3891

Released	2019-09-18
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	human gammaherpesvirus 4
Macromolecule	Portal protein (protein)

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6TJP \| pdb_00006tjp	Download File View File

Crystal structure of T7 bacteriophage portal protein, 13mer, closed valve - P212121

Fabrega-Ferrer, M., Cuervo, A., Fernandez, F.J., Machon, C., Perez-Luque, R., Pous, J., Vega, M.C., Carrascosa, J.L., Coll, M.

(2021) Acta Crystallogr D Struct Biol 77: 11-18

Released	2020-12-16
Method	X-RAY DIFFRACTION 3.74 Å
Organisms	Escherichia phage T7
Macromolecule	Portal protein (protein)

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6YSZ \| pdb_00006ysz	Download File View File

Cryo-EM structure of T7 bacteriophage DNA translocation gp15 core protein intermediate assembly

Perez-Ruiz, M., Pulido-Cid, M., Luque-Ortega, J.R., Cuervo, A., Carrascosa, J.L.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-08
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia phage T7
Macromolecule	Internal virion protein gp15 (protein)

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6YT5 \| pdb_00006yt5	Download File View File

Cryo-EM structure of T7 bacteriophage DNA translocation gp15-gp16 core complex intermediate assembly

Perez-Ruiz, M., Pulido-Cid, M., Luque-Ortega, J.R., Cuervo, A., Carrascosa, J.L.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-08
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Escherichia phage T7
Macromolecule	Internal virion protein gp15 (protein) Peptidoglycan transglycosylase gp16 (protein)

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1H5W | pdb_00001h5w

2WFS | pdb_00002wfs

2XVR | pdb_00002xvr

3IZG | pdb_00003izg

3J3I | pdb_00003j3i

3J4A | pdb_00003j4a

3J4B | pdb_00003j4b

3ZUE | pdb_00003zue

4BBL | pdb_00004bbl

4BIJ | pdb_00004bij

4BIL | pdb_00004bil

5ND1 | pdb_00005nd1

6QWP | pdb_00006qwp

6QX5 | pdb_00006qx5

6QXM | pdb_00006qxm

6R21 | pdb_00006r21

6RVR | pdb_00006rvr

6RVS | pdb_00006rvs

6TJP | pdb_00006tjp

6YSZ | pdb_00006ysz

6YT5 | pdb_00006yt5