RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Chai, Y."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 105 Structures.

Refinements

Structure Determination Methodology

experimental (105)

Scientific Name of Source Organism

	Homo sapiens (58)
	Mus musculus (14)
	Pteropus alecto (9)
	Severe acute respiratory syndrome coronavirus 2 (8)
	Influenza A virus (6)
	Middle East respiratory syndrome-related coronavirus (6)
	uncultured virus (6)
	unidentified influenza virus (6)
	African swine fever virus (5)
	Influenza A virus (A/chicken/China/028/2014(H7N9)) (5)

More...

Taxonomy

	Eukaryota (79)
	Riboviria (61)
	environmental samples (6)
	Varidnaviria (5)
	other sequences (4)
	Bacteria (2)
	Duplodnaviria (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (95)
	ELECTRON MICROSCOPY (10)

Polymer Entity Type

	Protein (105)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (19)
	2.0 - 2.5 (26)
	2.5 - 3.0 (29)
	3.0 - 3.5 (26)
	3.5 - 4.0 (3)

Release Date

	2015 - 2019 (45)
	2020 - 2024 (55)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (3)

Symmetry Type

	Asymmetric (75)
	Cyclic (30)

SCOP Classification

	All beta proteins (14)
	Artifacts (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 105 Structures

Page 1 of 5

Sort by

Explore in 3D

5F1I \| pdb_00005f1i	Download File View File

MHC with 9-mer peptide

Liu, J., Chai, Y., QI, J., Gao, G.F.

(2016) J Immunol 197: 2306-2315

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.904 Å
Organisms	Canis lupus familiaris
Macromolecule	9-mer peptide (protein) Beta2M (protein) MHC class I DLA-88 (protein)

Explore in 3D

5F1N \| pdb_00005f1n	Download File View File

MHC complexed to 11mer peptide

Liu, J., Chai, Y., Qi, J., Gao, G.F.

(2016) J Immunol 197: 2306-2315

Released	2016-11-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Canis lupus familiaris
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen (protein) Peptide from Cytochrome P450 family 1 subfamily B polypeptide 1 (protein)

Explore in 3D

5GR7 \| pdb_00005gr7	Download File View File

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 37-1

Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.

(2017) J Immunol 198: 873-882

Released	2017-06-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-D alpha chain (protein) MERS-CoV peptide (protein)

Explore in 3D

5GRJ \| pdb_00005grj	Download File View File

Crystal structure of human PD-L1 with monoclonal antibody avelumab

Liu, K., Tan, S., Chai, Y., Chen, D., Song, H., Zhang, C.W.-H., Shi, Y., Liu, J., Tan, W., Lyu, J., Gao, S., Yan, J., Qi, J., Gao, G.F.

(2017) Cell Res 27: 151-153

Released	2016-11-02
Method	X-RAY DIFFRACTION 3.206 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein) avelumab H chain (protein) avelumab L chain (protein)

Explore in 3D

5GSB \| pdb_00005gsb	Download File View File

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 37-3

Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.

(2017) J Immunol 198: 873-882

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-D alpha chain (protein) MERS-CoV peptide 37-3 (protein)

Explore in 3D

5GSR \| pdb_00005gsr	Download File View File

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide I5A

Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.

(2017) J Immunol 198: 873-882

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.198 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	9-mer peptide from Spike protein (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-D alpha chain (protein)

Explore in 3D

5GSV \| pdb_00005gsv	Download File View File

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 142-5

Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.

(2017) J Immunol 198: 873-882

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.996 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	10-mer peptide from Spike protein (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-D alpha chain (protein)

Explore in 3D

5GSX \| pdb_00005gsx	Download File View File

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 142-2

Liu, K., Chai, Y., Qi, J., Tan, W., Liu, W.J., Gao, G.F.

(2017) J Immunol 198: 873-882

Released	2017-06-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	10-mer peptide from Spike protein (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-D alpha chain (protein)

Explore in 3D

5WT9 \| pdb_00005wt9	Download File View File

Complex structure of PD-1 and nivolumab-Fab

Tan, S., Zhang, H., Chai, Y., Song, H., Tong, Z., Wang, Q., Qi, J., Wong, G., Zhu, X., Liu, W.J., Gao, S., Wang, Z., Shi, Y., Yang, F., Gao, G.F., Yan, J.

(2017) Nat Commun 8: 14369-14369

Released	2017-02-15
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Homo sapiens
Macromolecule	Heavy Chain of Nivolumab (protein) Light Chain of Nivolumab (protein) Programmed cell death protein 1 (protein)
Unique branched monosaccharides	FUC, NAG

Explore in 3D

5WWI \| pdb_00005wwi	Download File View File

Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)

Zhao, M., Liu, K., Chai, Y., Qi, J., Liu, J., Gao, G.F.

To be published

Released	2018-01-17
Method	X-RAY DIFFRACTION 3.194 Å
Organisms	Homo sapiens Influenza A virus (A/chicken/China/028/2014(H7N9))
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) LEU-TYR-LYS-LYS-LEU-LYS-ARG-GLU-MET-THR-PHE (protein)

Explore in 3D

5WWJ \| pdb_00005wwj	Download File View File

Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)

Zhao, M., Liu, K., Chai, Y., Qi, J., Liu, J., Gao, G.F.

To be published

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens Influenza A virus (A/chicken/China/028/2014(H7N9))
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) LEU-TYR-LYS-LYS-LEU-LYS-ARG-GLU-MET-THR-PHE (protein)

Explore in 3D

5WWU \| pdb_00005wwu	Download File View File

Crystal Structure of HLA-A*2402 in complex with 2009 pandemic influenza A(H1N1) virus and avian influenza A(H5N1) virus-derived peptide H1-25

Zhao, M., Liu, K., Chai, Y., Qi, J., Liu, J., Gao, G.F.

(2018) mBio 9:

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.794 Å
Organisms	Homo sapiens Influenza A virus (A/chicken/China/028/2014(H7N9))
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) LEU-TYR-LYS-LYS-LEU-LYS-ARG-GLU-ILE-THR-PHE (protein)

Explore in 3D

5WXC \| pdb_00005wxc	Download File View File

Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 2)

Zhao, M., Liu, K., Chai, Y., Qi, J., Liu, J., Gao, G.F.

(2018) mBio 9:

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Homo sapiens Influenza A virus (A/chicken/China/028/2014(H7N9))
Macromolecule	Beta-2-microglobulin (protein) H7-25-F (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

Explore in 3D

5WXD \| pdb_00005wxd	Download File View File

Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)

Zhao, M., Liu, K., Chai, Y., Qi, J., Liu, J., Gao, G.F.

(2018) mBio 9:

Released	2018-01-17
Method	X-RAY DIFFRACTION 3.295 Å
Organisms	Homo sapiens Influenza A virus (A/chicken/China/028/2014(H7N9))
Macromolecule	Beta-2-microglobulin (protein) H7-25 (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

Explore in 3D

5XJ3 \| pdb_00005xj3	Download File View File

Complex structure of ipilimumab-scFv and CTLA-4

He, M., Chai, Y., Qi, J., Tong, Z., Tan, S., Gao, G.F.

(2017) Oncotarget 8: 67129-67139

Released	2018-04-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Cytotoxic T-lymphocyte protein 4 (protein) ipilimumab-VH (protein) ipilimumab-VL (protein)

Explore in 3D

5XJ4 \| pdb_00005xj4	Download File View File

Complex structure of durvalumab-scFv/PD-L1

Tan, S., Liu, K., Chai, Y., Gao, G.F., Qi, J.

(2018) Protein Cell 9: 135-139

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein) durvalumab-VH (protein) durvalumab-VL (protein)

Explore in 3D

5Y0W \| pdb_00005y0w	Download File View File

The structure of RVFV Gn head domain

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rift Valley fever virus
Macromolecule	NSmGnGc (protein)

Explore in 3D

5Y0Y \| pdb_00005y0y	Download File View File

RVFV GN-AU

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 3.398 Å
Organisms	Rift Valley fever virus
Macromolecule	NSmGnGc (protein)
Unique Ligands	AU

Explore in 3D

5Y10 \| pdb_00005y10	Download File View File

SFTSV Gn head domain

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Membrane glycoprotein polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

Explore in 3D

5Y11 \| pdb_00005y11	Download File View File

SFTSV GN with neutralizing antibody MAb4-5

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Severe fever with thrombocytopenia syndrome virus
Macromolecule	MAb 4-5 heavy chain (protein) MAb 4-5 light chain (protein) Membrane glycoprotein polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

Explore in 3D

5YMV \| pdb_00005ymv	Download File View File

Crystal structure of 9-mer peptide from influenza virus in complex with BF2*1201

Xiao, J., Xiang, W., Qi, J., Chai, Y., Liu, W.J., Gao, G.F.

(2018) J Immunol 201: 3084-3095

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.197 Å
Organisms	Gallus gallus unidentified influenza virus
Macromolecule	ALA-VAL-LYS-GLY-VAL-GLY-THR-MET-VAL (protein) Beta-2-microglobulin (protein) Class I histocompatibility antigen, F10 alpha chain (protein)

Explore in 3D

5YMW \| pdb_00005ymw	Download File View File

Crystal structure of 8-mer peptide from Rous sarcoma virus in complex with BF2*1201

Xiao, J., Xiang, W., Qi, J., Chai, Y., Liu, W.J., Gao, G.F.

(2018) J Immunol 201: 3084-3095

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Gallus gallus Rous sarcoma virus - Prague C
Macromolecule	Beta-2-microglobulin (protein) Class I histocompatibility antigen, F10 alpha chain (protein) LEU-PRO-ALA-CYS-VAL-LEU-GLU-VAL (protein)

Explore in 3D

5YOW \| pdb_00005yow	Download File View File

The post-fusion structure of the Heartland virus Gc glycoprotein

Wu, Y., Gao, F., Qi, J.X., Chai, Y.

(2018) J Virol 92:

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Heartland virus
Macromolecule	Glycoprotein polyprotein (protein)
Unique branched monosaccharides	FUC, NAG

Explore in 3D

6A3V \| pdb_00006a3v	Download File View File

Complex structure of human 4-1BB and 4-1BBL

Li, Y., Zhang, C., Chai, Y., Qi, J., Tien, P., Gao, S., Gao, G.F.

(2018) Cell Rep 25: 909-920.e4

Released	2018-10-10
Method	X-RAY DIFFRACTION 3.391 Å
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor ligand superfamily member 9 (protein) Tumor necrosis factor receptor superfamily member 9 (protein)
Unique Ligands	NAG

Explore in 3D

6A3W \| pdb_00006a3w	Download File View File

Complex structure of 4-1BB and utomilumab

Li, Y., Tan, S., Zhang, C., Chai, Y., Qi, J., Tien, P., Gao, S., Gao, G.F.

(2018) Cell Rep 25: 909-920.e4

Released	2018-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor receptor superfamily member 9 (protein) utomilumab VH (protein) utomilumab VL (protein)
Unique Ligands	NAG

1 to 25 of 105 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5F1I | pdb_00005f1i

5F1N | pdb_00005f1n

5GR7 | pdb_00005gr7

5GRJ | pdb_00005grj

5GSB | pdb_00005gsb

5GSR | pdb_00005gsr

5GSV | pdb_00005gsv

5GSX | pdb_00005gsx

5WT9 | pdb_00005wt9

5WWI | pdb_00005wwi

5WWJ | pdb_00005wwj

5WWU | pdb_00005wwu

5WXC | pdb_00005wxc

5WXD | pdb_00005wxd

5XJ3 | pdb_00005xj3

5XJ4 | pdb_00005xj4

5Y0W | pdb_00005y0w

5Y0Y | pdb_00005y0y

5Y10 | pdb_00005y10

5Y11 | pdb_00005y11

5YMV | pdb_00005ymv

5YMW | pdb_00005ymw

5YOW | pdb_00005yow

6A3V | pdb_00006a3v

6A3W | pdb_00006a3w