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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Chen, Z."

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Search Summary

This query matches 500 Structures.

Refinements

Structure Determination Methodology

experimental (500)

Scientific Name of Source Organism

	Homo sapiens (256)
	synthetic construct (33)
	Mus musculus (28)
	Saccharomyces cerevisiae S288C (19)
	Arabidopsis thaliana (16)
	Xenopus laevis (15)
	Rattus norvegicus (9)
	Escherichia coli (8)
	Hirudo medicinalis (7)
	Human immunodeficiency virus 1 (7)

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Taxonomy

	Eukaryota (384)
	Bacteria (59)
	Riboviria (48)
	other sequences (35)
	Duplodnaviria (9)
	Eukaryota (eukaryotes) (5)
	Archaea (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (399)
	ELECTRON MICROSCOPY (85)
	SOLUTION NMR (16)

Polymer Entity Type

	Protein (500)
	DNA (28)
	RNA (7)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (24)
	1.5 - 2.0 (105)
	2.0 - 2.5 (133)
	2.5 - 3.0 (109)
	3.0 - 3.5 (66)
	3.5 - 4.0 (18)
	4.0 - 4.5 (8)
	> 4.5 (20)

Release Date

	1980 - 1984 (2)
	1985 - 1989 (1)
	1990 - 1994 (1)
	1995 - 1999 (16)
	2000 - 2004 (16)
	2005 - 2009 (62)
	2010 - 2014 (114)
	2015 - 2019 (138)
	2020 - 2024 (145)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (159)
	Oxidoreductases (64)
	Transferases (65)
	Lyases (9)
	Ligases (6)
	Isomerases (4)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (31)
	mpstruc (30)
	OPM (27)
	MemProtMD (21)

Symmetry Type

	Asymmetric (392)
	Cyclic (104)
	Dihedral (21)
	Icosahedral (12)

SCOP Classification

	All beta proteins (93)
	Alpha and beta proteins (a/b) (44)
	Alpha and beta proteins (a+b) (43)
	All alpha proteins (29)
	Artifacts (29)
	Small proteins (15)
	Coiled coil proteins (1)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)
	Peptides (1)

AllSelected

1 to 25 of 500 Structures

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1A1W \| pdb_00001a1w	Download File View File

FADD DEATH EFFECTOR DOMAIN, F25Y MUTANT, NMR MINIMIZED AVERAGE STRUCTURE

Eberstadt, M., Huang, B., Chen, Z., Meadows, R.P., Ng, C., Fesik, S.W.

(1998) Nature 392: 941-945

Released	1998-12-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1A1Z \| pdb_00001a1z	Download File View File

FADD DEATH EFFECTOR DOMAIN, F25G MUTANT, NMR MINIMIZED AVERAGE STRUCTURE

Eberstadt, M., Huang, B., Chen, Z., Meadows, R.P., Ng, C., Fesik, S.W.

(1998) Nature 392: 941-945

Released	1998-12-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FADD PROTEIN (protein)

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1AAR \| pdb_00001aar	Download File View File

STRUCTURE OF A DIUBIQUITIN CONJUGATE AND A MODEL FOR INTERACTION WITH UBIQUITIN CONJUGATING ENZYME (E2)

Cook, W.J., Jeffrey, L.C., Carson, M., Chen, Z., Pickart, C.M.

(1992) J Biological Chem 267: 16467-16471

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	DI-UBIQUITIN (protein)

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1AHT \| pdb_00001aht	Download File View File

CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN COMPLEXED WITH HIRUGEN AND P-AMIDINOPHENYLPYRUVATE AT 1.6 ANGSTROMS RESOLUTION

Chen, Z.

(1995) Arch Biochem Biophys 322: 198-203

Released	1996-03-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	APA

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1BFZ \| pdb_00001bfz	Download File View File

BOUND CONFORMATION OF N-TERMINAL CLEAVAGE PRODUCT PEPTIDE MIMIC (P1-P9 OF RELEASE SITE) WHILE BOUND TO HCMV PROTEASE AS DETERMINED BY TRANSFERRED NOESY EXPERIMENTS (P1-P5 SHOWN ONLY), NMR, 32 STRUCTURES

Laplante, S.R., Aubry, N., Bonneau, P.R., Cameron, D.R., Lagace, L., Massariol, M.-J., Montpetit, H., Ploufe, C., Kawai, S.H., Fulton, B.D., Chen, Z., Ni, F.

(1998) Biochemistry 37: 9793-9801

Released	1999-05-25
Method	SOLUTION NMR
Macromolecule	HCMV PROTEASE R-SITE N-TERMINAL CLEAVAGE PRODUCT (protein)

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1BMV \| pdb_00001bmv	Download File View File

PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION

Chen, Z., Stauffacher, C., Li, Y., Schmidt, T., Bomu, W., Kamer, G., Shanks, M., Lomonossoff, G., Johnson, J.E.

(1989) Science 245: 154-159

Released	1989-10-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bean pod mottle virus
Macromolecule	PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) (protein) PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) (protein) RNA (5'-R(GPGPUPCPAPAPAPAPUPGP*C)-3') (nucleic acid)

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1C6V \| pdb_00001c6v	Download File View File

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Chen, Z., Yan, Y., Munshi, S., Li, Y., Zruygay-Murphy, J., Xu, B., Witmer, M., Felock, P., Wolfe, A., Sardana, V., Emini, E.A., Hazuda, D., Kuo, L.C.

(2000) J Mol Biology 296: 521-533

Released	2000-12-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIU89134) (protein) PROTEIN (SIV INTEGRASE) (protein)

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1EKM \| pdb_00001ekm	Download File View File

CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI

Chen, Z., Schwartz, B., Williams, N.K., Li, R., Klinman, J.P., Mathews, F.S.

(2000) Biochemistry 39: 9709-9717

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ogataea angusta
Macromolecule	COPPER AMINE OXIDASE (protein)
Unique Ligands	ZN

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1FVY \| pdb_00001fvy	Download File View File

SOLUTION STRUCTURE OF THE OSTEOGENIC 1-31 FRAGMENT OF THE HUMAN PARATHYROID HORMONE

Chen, Z.

(2000) Biochemistry 39: 12766-12777

Released	2000-11-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PARATHYROID HORMONE (protein)

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1G72 \| pdb_00001g72	Download File View File

CATALYTIC MECHANISM OF QUINOPROTEIN METHANOL DEHYDROGENASE: A THEORETICAL AND X-RAY CRYSTALLOGRAPHIC INVESTIGATION

Zheng, Y., Xia, Z., Chen, Z., Bruice, T.C., Mathews, F.S.

(2001) Proc Natl Acad Sci U S A 98: 432-434

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	METHANOL DEHYDROGENASE HEAVY SUBUNIT (protein) METHANOL DEHYDROGENASE LIGHT SUBUNIT (protein)
Unique Ligands	CA, PQQ

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1GG4 \| pdb_00001gg4	Download File View File

CRYSTAL STRUCTURE OF ESCHERICHIA COLI UDPMURNAC-TRIPEPTIDE D-ALANYL-D-ALANINE-ADDING ENZYME (MURF) AT 2.3 ANGSTROM RESOLUTION

Yan, Y., Munshi, S., Chen, Z.

(2000) J Mol Biology 304: 435-445

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE (protein)

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1HSG \| pdb_00001hsg	Download File View File

CRYSTAL STRUCTURE AT 1.9 ANGSTROMS RESOLUTION OF HUMAN IMMUNODEFICIENCY VIRUS (HIV) II PROTEASE COMPLEXED WITH L-735,524, AN ORALLY BIOAVAILABLE INHIBITOR OF THE HIV PROTEASES

Chen, Z.

(1994) J Biological Chem 269: 26344-26348

Released	1996-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	MK1

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1HSH \| pdb_00001hsh	Download File View File

CRYSTAL STRUCTURE AT 1.9 ANGSTROMS RESOLUTION OF HUMAN IMMUNODEFICIENCY VIRUS (HIV) II PROTEASE COMPLEXED WITH L-735,524, AN ORALLY BIOAVAILABLE INHIBITOR OF THE HIV PROTEASES

Chen, Z.

(1994) J Biological Chem 269: 26344-26348

Released	1996-04-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus type 2 (ISOLATE ROD)
Macromolecule	HIV-II PROTEASE (protein)
Unique Ligands	MK1

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1HSI \| pdb_00001hsi	Download File View File

CRYSTAL STRUCTURE AT 1.9 ANGSTROMS RESOLUTION OF HUMAN IMMUNODEFICIENCY VIRUS (HIV) II PROTEASE COMPLEXED WITH L-735,524, AN ORALLY BIOAVAILABLE INHIBITOR OF THE HIV PROTEASES

Chen, Z.

(1994) J Biological Chem 269: 26344-26348

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 2
Macromolecule	HIV-2 PROTEASE (protein)

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1IAP \| pdb_00001iap	Download File View File

CRYSTAL STRUCTURE OF P115RHOGEF RGRGS DOMAIN

Sprang, S.R., Chen, Z.

(2001) Nat Struct Biol 8: 805-809

Released	2001-09-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GUANINE NUCLEOTIDE EXCHANGE FACTOR P115RHOGEF (protein)

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1IEH \| pdb_00001ieh	Download File View File

SOLUTION STRUCTURE OF A SOLUBLE SINGLE-DOMAIN ANTIBODY WITH HYDROPHOBIC RESIDUES TYPICAL OF A VL/VH INTERFACE

Vranken, W., Tolkatchev, D., Xu, P., Tanha, J., Chen, Z., Narang, S., Ni, F.

(2002) Biochemistry 41: 8570-8579

Released	2002-08-07
Method	SOLUTION NMR
Organisms	Lama glama
Macromolecule	BRUC.D4.4 (protein)

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1INP \| pdb_00001inp	Download File View File

CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE AT 2.3 ANGSTROMS RESOLUTION

York, J.D., Ponder, J.W., Chen, Z., Mathews, F.S., Majerus, P.W.

(1994) Biochemistry 33: 13164-13171

Released	1995-01-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	INOSITOL POLYPHOSPHATE 1-PHOSPHATASE (protein)
Unique Ligands	MG

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1JXP \| pdb_00001jxp	Download File View File

BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A

Yan, Y., Munshi, S., Chen, Z.

(1998) Protein Sci 7: 837-847

Released	1998-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hepatitis C virus (isolate BK)
Macromolecule	NS3 SERINE PROTEASE (protein) NS4A (protein)
Unique Ligands	ZN

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1MU6 \| pdb_00001mu6	Download File View File

Crystal Structure of Thrombin in Complex with L-378,622

Burgey, C.S., Robinson, K.A., Lyle, T.A., Sanderson, P.E., Lewis, S.D., Lucas, B.J., Krueger, J.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Lyle, E.A., Williams, P.D., Coburn, C.A., Dorsey, B.D., Barrow, J.C., Stranieri, M.T., Holahan, M.A., Sitko, G.R., Cook, J.J., McMasters, D.R., McDonough, C.M., Sanders, W.M., Wallace, A.A., Clayton, F.C., Bohn, D., Leonard, Y.M., Detwiler Jr., T.J., Lynch Jr., J.J., Yan, Y., Chen, Z., Kuo, L., Gardell, S.J., Shafer, J.A., Vacca, J.P.J.

(2003) J Med Chem 46: 461-473

Released	2004-04-06
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDA

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1MU8 \| pdb_00001mu8	Download File View File

thrombin-hirugen_l-378,650

(2003) J Med Chem 46: 461-473

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDB

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1MUE \| pdb_00001mue	Download File View File

Thrombin-Hirugen-L405,426

Burgey, C.S., Robinson, K.A., Lyle, T.A., Nantermet, P.G., Selnick, H.G., Isaacs, R.C., Lewis, S.D., Lucas, B.J., Krueger, J.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Lyle, E.A., Stranieri, M.T., Cook, J.J., McMasters, D.R., Pellicore, J.M., Pal, S., Wallace, A.A., Clayton, F.C., Bohn, D., Welsh, D.C., Lynch, J.J., Yan, Y., Chen, Z., Kuo, L., Gardell, S.J., Shafer, J.A., Vacca, J.P.

(2003) Bioorg Med Chem Lett 13: 1353-1357

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN IIB (protein) THROMBIN (protein)
Unique Ligands	CDD

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1NPA \| pdb_00001npa	Download File View File

crystal structure of HIV-1 protease-hup

Smith III, A.B., Hirschmann, R., Pasternak, A., Yao, W., Sprengeler, P.A., Holloway, M.K., Kuo, L.C., Chen, Z., Darke, P.L., Schleif, W.A.

(1997) J Med Chem 40: 2440-2444

Released	2004-01-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	3NH

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1NS3 \| pdb_00001ns3	Download File View File

STRUCTURE OF HCV PROTEASE (BK STRAIN)

Yan, Y., Munshi, S., Chen, Z.

(1998) Protein Sci 7: 837-847

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Hepatitis C virus (isolate BK)
Macromolecule	NS3 PROTEASE (protein) NS4A PEPTIDE (protein)
Unique Ligands	ZN

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1NY7 \| pdb_00001ny7	Download File View File

COWPEA MOSAIC VIRUS (CPMV)

Lin, T., Chen, Z., Usha, R., Stauffacher, C.V., Dai, J.-B., Schmidt, T., Johnson, J.E.

(1999) Virology 265: 20-34

Released	2003-03-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cowpea mosaic virus
Macromolecule	COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT (protein) COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT (protein)

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1SHZ \| pdb_00001shz	Download File View File

Crystal Structure of the p115RhoGEF rgRGS Domain in A Complex with Galpha(13):Galpha(i1) Chimera

Chen, Z., Singer, W.D., Sternweis, P.C., Sprang, S.R.

(2005) Nat Struct Mol Biol 12: 191-197

Released	2005-01-18
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Mus musculus Rattus norvegicus
Macromolecule	Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera (protein) Rho guanine nucleotide exchange factor 1 (protein)
Unique Ligands	ALF, GDP, MG

1 to 25 of 500 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A1W | pdb_00001a1w

1A1Z | pdb_00001a1z

1AAR | pdb_00001aar

1AHT | pdb_00001aht

1BFZ | pdb_00001bfz

1BMV | pdb_00001bmv

1C6V | pdb_00001c6v

1EKM | pdb_00001ekm

1FVY | pdb_00001fvy

1G72 | pdb_00001g72

1GG4 | pdb_00001gg4

1HSG | pdb_00001hsg

1HSH | pdb_00001hsh

1HSI | pdb_00001hsi

1IAP | pdb_00001iap

1IEH | pdb_00001ieh

1INP | pdb_00001inp

1JXP | pdb_00001jxp

1MU6 | pdb_00001mu6

1MU8 | pdb_00001mu8

1MUE | pdb_00001mue

1NPA | pdb_00001npa

1NS3 | pdb_00001ns3

1NY7 | pdb_00001ny7

1SHZ | pdb_00001shz