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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Choi, Y."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Campylobacter jejuni (8)
	Homo sapiens (7)
	Escherichia coli (3)
	Escherichia coli K-12 (3)
	Rattus norvegicus (2)
	Carassius auratus (1)

Taxonomy

	Bacteria (12)
	Eukaryota (10)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (21)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (22)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (1)
	2015 - 2019 (2)
	2020 - 2024 (16)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (3)

Symmetry Type

	Asymmetric (18)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (3)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 22 of 22 Structures

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1LB4 \| pdb_00001lb4	Download File View File

TRAF6 apo structure

Ye, H., Arron, J.R., Lamothe, B., Cirilli, M., Kobayashi, T., Shevde, N.K., Segal, D., Dzivenu, O., Vologodskaia, M., Yim, M., Du, K., Singh, S., Pike, J.W., Darnay, B.G., Choi, Y., Wu, H.

(2002) Nature 418: 443-447

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 6 (protein)

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1LB5 \| pdb_00001lb5	Download File View File

TRAF6-RANK Complex

Ye, H., Arron, J.R., Lamothe, B., Cirilli, M., Kobayashi, T., Shevde, N.K., Segal, D., Dzivenu, O., Vologodskaia, M., Yim, M., Du, K., Singh, S., Pike, J.W., Darnay, B.G., Choi, Y., Wu, H.

(2002) Nature 418: 443-447

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 6 (protein) receptor activator of nuclear factor-kappa B (protein)

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1LB6 \| pdb_00001lb6	Download File View File

TRAF6-CD40 Complex

Ye, H., Arron, J.R., Lamothe, B., Cirilli, M., Kobayashi, T., Shevde, N.K., Segal, D., Dzivenu, O., Vologodskaia, M., Yim, M., Du, K., Singh, S., Pike, J.W., Darnay, B.G., Choi, Y., Wu, H.

(2002) Nature 418: 443-447

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	CD40 antigen (protein) TNF receptor-associated factor 6 (protein)

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1YUC \| pdb_00001yuc	Download File View File

Human Nuclear Receptor Liver Receptor Homologue-1, LRH-1, Bound to Phospholipid and a Fragment of Human SHP

Ortlund, E.A., Yoonkwang, L., Solomon, I.H., Hager, J.M., Safi, R., Choi, Y., Guan, Z., Tripathy, A., Raetz, C.R.H., McDonnell, D.P., Moore, D.D., Redinbo, M.R.

(2005) Nat Struct Mol Biol 12: 357-363

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor 0B2 (protein) Orphan nuclear receptor NR5A2 (protein)
Unique Ligands	EPH, GOL

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2RVC \| pdb_00002rvc	Download File View File

Solution structure of Zalpha domain of goldfish ZBP-containing protein kinase

Lee, A., Park, C., Park, J., Kwon, M., Choi, Y., Kim, K., Choi, B., Lee, J.

(2016) Nucleic Acids Res 44: 2936-2948

Released	2016-02-03
Method	SOLUTION NMR
Organisms	Carassius auratus
Macromolecule	Interferon-inducible and double-stranded-dependent eIF-2kinase (protein)

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5Z2W \| pdb_00005z2w	Download File View File

Crystal structure of the bacterial cell division protein FtsQ and FtsB

Choi, Y., Yoon, H.J., Lee, H.H.

(2018) Sci Rep 8: 18061-18061

Released	2019-01-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Cell division protein FtsB (protein) Cell division protein FtsQ (protein)
Unique Ligands	MG

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6JJK \| pdb_00006jjk	Download File View File

Crystal structure of the DegP dodecamer with a modulator

Cho, H., Choi, Y., Lee, H.H., Kim, S.

(2020) Commun Biol 3: 547-547

Released	2020-09-02
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	CYS-TYR-TYR-LYS-ILE (protein) Periplasmic serine endoprotease DegP (protein)

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6JJL \| pdb_00006jjl	Download File View File

Crystal structure of the DegP dodecamer with a modulator

Cho, H., Choi, Y., Lee, H.H., Kim, S.

(2020) Commun Biol 3: 547-547

Released	2020-09-02
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Escherichia coli K-12
Macromolecule	CYS-TYR-ARG-LYS-LEU (protein) Periplasmic serine endoprotease DegP (protein)

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6JJO \| pdb_00006jjo	Download File View File

Crystal structure of the DegP dodecamer with a modulator

Cho, H., Choi, Y., Lee, H.H., Kim, S.

(2020) Commun Biol 3: 547-547

Released	2020-09-02
Method	X-RAY DIFFRACTION 4.157 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Periplasmic serine endoprotease DegP (protein) TMB-CYRKL modulator (protein)

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7E60 \| pdb_00007e60	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 1

Min, K., Yoon, H.J., Choi, Y., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HX9, ZN

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7E61 \| pdb_00007e61	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 2

Min, K.J., Yoon, H.J., Choi, Y., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HXF, ZN

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7E63 \| pdb_00007e63	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 2-1

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HY9, ZN

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7E64 \| pdb_00007e64	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 2-2

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HWX, ZN

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7E65 \| pdb_00007e65	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 3

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HXO, ZN

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7E66 \| pdb_00007e66	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 3-1

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HY6, ZN

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7E67 \| pdb_00007e67	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 3-2

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HXR, ZN

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7E69 \| pdb_00007e69	Download File View File

The crystal structure of peptidoglycan peptidase in complex with inhibitor 3-3

Choi, Y., Min, K.J., Yoon, H.J., Lee, H.H.

(2022) Commun Biol 5: 395

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Campylobacter jejuni
Macromolecule	Peptidase M23 (protein)
Unique Ligands	HX6, ZN

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7VOU \| pdb_00007vou	Download File View File

The crystal structure of human forkhead box protein in complex with DNA 1

Choi, Y., Yoon, H.J., Lee, H.H.

(2022) Nucleic Acids Res 50: 8929-8946

Released	2022-08-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Forkhead box protein L2 (protein) DNA (5'-D(APCPTPTPGPTPTPTPAPCPAPTPTPTPTPG)-3') (nucleic acid) DNA (5'-D(CPAPAPAPAPTPGPTPAPAPAPCPAPAPGPT)-3') (nucleic acid)

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7VOV \| pdb_00007vov	Download File View File

The crystal structure of human forkhead box protein in complex with DNA 2

Choi, Y., Yoon, H.J., Lee, H.H.

(2022) Nucleic Acids Res 50: 8929-8946

Released	2022-08-17
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Forkhead box protein L2 (protein) DNA (5'-D(PAPAPAPTPAPTPTPTPAPTPTPAPTPCPGPA)-3') (nucleic acid) DNA (5'-D(PTPCPGPAPTPAPAPTPAPAPAPTPAPTP*T)-3') (nucleic acid)

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7VOX \| pdb_00007vox	Download File View File

The crystal structure of human forkhead box protein A in complex with DNA 2

Choi, Y., Yoon, H.J., Lee, H.H.

(2022) Nucleic Acids Res 50: 8929-8946

Released	2022-08-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte nuclear factor 3-alpha (protein) DNA (5'-D(PAPAPAPTPAPTPTPTPAPTPTPAPTPCPGPA)-3') (nucleic acid) DNA (5'-D(PTPCPGPAPTPAPAPTPAPAPAPTPAPTPTPT)-3') (nucleic acid)
Unique Ligands	MG

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8HST \| pdb_00008hst	Download File View File

The structure of rat beta-arrestin1

Yun, Y., Yoon, H.J., Choi, Y., Lee, H.H.

(2023) Proc Natl Acad Sci U S A 120: e2301934120-e2301934120

Released	2023-07-19
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Rattus norvegicus
Macromolecule	Beta-arrestin-1 (protein)

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8HSV \| pdb_00008hsv	Download File View File

The structure of rat beta-arrestin1 in complex with a rat Mdm2 peptide

Yun, Y., Yoon, H.J., Choi, Y., Lee, H.H.

(2023) Proc Natl Acad Sci U S A 120: e2301934120-e2301934120

Released	2023-07-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus norvegicus
Macromolecule	Beta-arrestin-1 (protein) peptide from E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	SO4

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1LB4 | pdb_00001lb4

1LB5 | pdb_00001lb5

1LB6 | pdb_00001lb6

1YUC | pdb_00001yuc

2RVC | pdb_00002rvc

5Z2W | pdb_00005z2w

6JJK | pdb_00006jjk

6JJL | pdb_00006jjl

6JJO | pdb_00006jjo

7E60 | pdb_00007e60

7E61 | pdb_00007e61

7E63 | pdb_00007e63

7E64 | pdb_00007e64

7E65 | pdb_00007e65

7E66 | pdb_00007e66

7E67 | pdb_00007e67

7E69 | pdb_00007e69

7VOU | pdb_00007vou

7VOV | pdb_00007vov

7VOX | pdb_00007vox

8HST | pdb_00008hst

8HSV | pdb_00008hsv