RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Cong, Y."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 148 Structures.

Refinements

Structure Determination Methodology

experimental (148)

Scientific Name of Source Organism

	Homo sapiens (53)
	Severe acute respiratory syndrome coronavirus 2 (47)
	Mus musculus (39)
	Saccharomyces cerevisiae S288C (20)
	Bos taurus (9)
	Coxsackievirus A16 (8)
	enterovirus D68 (4)
	Androctonus australis (2)
	Chlamydomonas reinhardtii (2)
	Coxsackievirus A10 (2)

More...

Taxonomy

	Eukaryota (120)
	Riboviria (72)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (138)
	X-RAY DIFFRACTION (8)
	ELECTRON CRYSTALLOGRAPHY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (148)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (8)
	3.0 - 3.5 (37)
	3.5 - 4.0 (37)
	4.0 - 4.5 (22)
	> 4.5 (38)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (9)
	2015 - 2019 (26)
	2020 - 2024 (103)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (51)
	Transferases (10)

Membrane Protein Annotation

	PDBTM (12)
	MemProtMD (6)
	OPM (4)
	mpstruc (3)

Symmetry Type

	Asymmetric (79)
	Cyclic (45)
	Icosahedral (19)
	Helical (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (5)
	Artifacts (2)

AllSelected

1 to 25 of 148 Structures

Page 1 of 6

Sort by

Explore in 3D

3B5U \| pdb_00003b5u	Download File View File

Actin filament model from extended form of acromsomal bundle in the Limulus sperm

Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.

(2008) J Mol Biology 375: 331-336

Released	2008-04-15
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)

Explore in 3D

3B63 \| pdb_00003b63	Download File View File

Actin filament model in the extended form of acromsomal bundle in the Limulus sperm

Cong, Y., Topf, M., Sali, A., Matsudaira, P., Dougherty, M., Chiu, W., Schmid, M.F.

(2008) J Mol Biology 375: 331-336

Released	2008-11-18
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Limulus polyphemus
Macromolecule	Unique protein chains: 7

Explore in 3D

3IXV \| pdb_00003ixv	Download File View File

Scorpion Hemocyanin resting state pseudo atomic model built based on cryo-EM density map

Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.

(2009) Structure 17: 749-758

Released	2009-06-02
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Androctonus australis
Macromolecule	Hemocyanin AA6 chain (protein)

Explore in 3D

3IXW \| pdb_00003ixw	Download File View File

Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map

Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.

(2009) Structure 17: 749-758

Released	2009-06-02
Method	ELECTRON MICROSCOPY 8 Å
Organisms	Androctonus australis
Macromolecule	Hemocyanin AA6 chain (protein)

Explore in 3D

3IYG \| pdb_00003iyg	Download File View File

Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map

Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.

(2010) Proc Natl Acad Sci U S A 107: 4967-4972

Released	2010-03-16
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 8

Explore in 3D

3J0C \| pdb_00003j0c	Download File View File

Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map

Zhang, R., Hryc, C.F., Cong, Y., Liu, X., Jakana, J., Gorchakov, R., Baker, M.L., Weaver, S.C., Chiu, W.

(2011) EMBO J 30: 3854-3863

Released	2011-08-24
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Venezuelan equine encephalitis virus (strain TC-83)
Macromolecule	Capsid protein (protein) E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein)

Explore in 3D

3J32 \| pdb_00003j32	Download File View File

An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)

Zhang, Q., Dai, X., Cong, Y., Zhang, J., Chen, D.-H., Dougherty, M., Wang, J., Ludtke, S., Schmid, M.F., Chiu, W.

(2013) Structure 21: 604-613

Released	2013-04-17
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Haliotis diversicolor
Macromolecule	Hemocyanin isoform 1 (protein)

Explore in 3D

3JAU \| pdb_00003jau	Download File View File

The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5

Fan, C., Ye, X.H., Ku, Z.Q., Zuo, T., Kong, L.L., Zhang, C., Shi, J.P., Liu, Q.W., Chen, T., Zhang, Y.Y., Jiang, W., Zhang, L.Q., Huang, Z., Cong, Y.

(2016) PLoS Pathog 12: e1005454-e1005454

Released	2016-02-10
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Human enterovirus Mus musculus
Macromolecule	Capsid protein VP1 (protein) Heavy chain of Fab fragment variable region of antibody D5 (protein) Light chain of Fab fragment variable region of antibody D5 (protein)

Explore in 3D

3KTT \| pdb_00003ktt	Download File View File

Atomic model of bovine TRiC CCT2(beta) subunit derived from a 4.0 Angstrom cryo-EM map

Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.

(2010) Proc Natl Acad Sci U S A 107: 4967-4972

Released	2010-03-16
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Bos taurus
Macromolecule	T-complex protein 1 subunit beta (protein)

Explore in 3D

4A0O \| pdb_00004a0o	Download File View File

Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 10.5 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

Explore in 3D

4A0V \| pdb_00004a0v	Download File View File

model refined against the Symmetry-free cryo-EM map of TRiC-AMP-PNP

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 10.7 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

Explore in 3D

4A0W \| pdb_00004a0w	Download File View File

model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 13.9 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

Explore in 3D

4A13 \| pdb_00004a13	Download File View File

model refined against symmetry-free cryo-EM map of TRiC-ADP

Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.

(2012) EMBO J 31: 720

Released	2012-02-15
Method	ELECTRON MICROSCOPY 11.3 Å
Organisms	Bos taurus
Macromolecule	T-COMPLEX PROTEIN 1 SUBUNIT BETA (protein)

Explore in 3D

4V94 \| pdb_00004v94	Download File View File

Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS

Leitner, A., Joachimiak, L.A., Bracher, A., Walzthoeni, T., Chen, B., Monkemeyer, L., Pechmann, S., Holmes, S., Cong, Y., Ma, B., Ludtke, S., Chiu, W., Hartl, F.U., Aebersold, R., Frydman, J.

(2012) Structure 20: 814-825

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8
Unique Ligands	ADP, BEF, MG

Explore in 3D

5GW4 \| pdb_00005gw4	Download File View File

Structure of Yeast NPP-TRiC

Zang, Y., Jin, M., Wang, H., Cong, Y.

(2016) Nat Struct Mol Biol 23: 1083-1091

Released	2016-10-26
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

Explore in 3D

5GW5 \| pdb_00005gw5	Download File View File

Structure of TRiC-AMP-PNP

Zang, Y., Jin, M., Wang, H., Cong, Y.

(2016) Nat Struct Mol Biol 23: 1083-1091

Released	2016-10-26
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

Explore in 3D

5H1J \| pdb_00005h1j	Download File View File

Crystal structure of WD40 repeat domains of Gemin5

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)

Explore in 3D

5H1K \| pdb_00005h1k	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment

Wang, Y., Jin, W., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(GPCPAPAPUPUPUPUPUPGPAPCP*A)-3') (nucleic acid)

Explore in 3D

5H1L \| pdb_00005h1l	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(APUPUPUPUPUP*G)-3') (nucleic acid)
Unique Ligands	GOL