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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dai, J."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (5)
	Lactococcus lactis (3)
	Saccharomyces cerevisiae (3)
	Severe acute respiratory syndrome-related coronavirus (3)
	Tobacco mosaic virus (vulgare) (3)
	Bacillus cereus (2)
	Chlamydomonas reinhardtii (1)
	Deinococcus radiodurans (1)
	Escherichia coli (1)
	Mus musculus (1)

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Taxonomy

	Eukaryota (11)
	Bacteria (9)
	Riboviria (7)

Experimental Method

	X-RAY DIFFRACTION (22)
	SOLUTION NMR (7)
	ELECTRON MICROSCOPY (3)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (27)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (12)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (10)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)
	Isomerases (3)
	Lyases (2)
	Oxidoreductases (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (9)
	Dihedral (4)

SCOP Classification

	Coiled coil proteins (5)
	Alpha and beta proteins (a/b) (5)
	All beta proteins (3)

AllSelected

1 to 25 of 34 Structures

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1JCC \| pdb_00001jcc	Download File View File

Crystal Structure of a Novel Alanine-Zipper Trimer at 1.7 A Resolution, V13A,L16A,V20A,L23A,V27A,M30A,V34A mutations

Liu, J., Dai, J., Lu, M.

(2003) Biochemistry 42: 5657-5664

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)
Unique Ligands	ZN

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1S18 \| pdb_00001s18	Download File View File

Structure and protein design of human apyrase

Dai, J., Liu, J., Deng, Y., Smith, T.M., Lu, M.

(2004) Cell 116: 649-659

Released	2004-03-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	apyrase (protein)
Unique Ligands	ACT, CA, TRS

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1S1D \| pdb_00001s1d	Download File View File

Structure and protein design of human apyrase

Dai, J., Liu, J., Deng, Y., Smith, T.M., Lu, M.

(2004) Cell 116: 649-659

Released	2004-03-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	apyrase (protein)
Unique Ligands	ACT, CA, GP2, SO4, TRS

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1SWV \| pdb_00001swv	Download File View File

Crystal structure of the D12A mutant of phosphonoacetaldehyde hydrolase complexed with magnesium

Zhang, G., Morais, M.C., Dai, J., Zhang, W., Dunaway-Mariano, D., Allen, K.N.

(2004) Biochemistry 43: 4990-4997

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus cereus
Macromolecule	phosphonoacetaldehyde hydrolase (protein)
Unique Ligands	MG

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1SWW \| pdb_00001sww	Download File View File

Crystal structure of the phosphonoacetaldehyde hydrolase D12A mutant complexed with magnesium and substrate phosphonoacetaldehyde

Zhang, G., Morais, M.C., Dai, J., Zhang, W., Dunaway-Mariano, D., Allen, K.N.

(2004) Biochemistry 43: 4990-4997

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus cereus
Macromolecule	phosphonoacetaldehyde hydrolase (protein)
Unique Ligands	MG, POA

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1X95 \| pdb_00001x95	Download File View File

Solution structure of the DNA-hexamer ATGCAT complexed with DNA Bis-intercalating Anticancer Drug XR5944 (MLN944)

Dai, J., Punchihewa, C., Mistry, P., Ooi, A.T., Yang, D.

(2004) J Biological Chem 279: 46096-46103

Released	2004-09-28
Method	SOLUTION NMR
Macromolecule	5'-D(APTPGPCPAPT)-3' (nucleic acid)
Unique Ligands	XR2

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1XAV \| pdb_00001xav	Download File View File

Major G-quadruplex structure formed in human c-MYC promoter, a monomeric parallel-stranded quadruplex

Ambrus, A., Chen, D., Dai, J., Jones, R.A., Yang, D.

(2005) Biochemistry 44: 2048-2058

Released	2005-02-01
Method	SOLUTION NMR
Macromolecule	5'-D(TPGPAPGPGPGPTPGPGPGPTPAPGPGPGPTPGPGPGPTPAPA)-3' (nucleic acid)
Unique Ligands	K

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1Z4N \| pdb_00001z4n	Download File View File

Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate cocrystallized with Fluoride

Tremblay, L.W., Zhang, G., Dai, J., Dunaway-Mariano, D., Allen, K.N.

(2005) J Am Chem Soc 127: 5298-5299

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Lactococcus lactis
Macromolecule	Beta-phosphoglucomutase (protein)
Unique Ligands	GL1, MG

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1Z4O \| pdb_00001z4o	Download File View File

Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate

Tremblay, L.W., Zhang, G., Dai, J., Dunaway-Mariano, D., Allen, K.N.

(2005) J Am Chem Soc 127: 5298-5299

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus lactis
Macromolecule	Beta-phosphoglucomutase (protein)
Unique Ligands	GL1, MG

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1ZOL \| pdb_00001zol	Download File View File

native beta-PGM

Zhang, G., Tremblay, L.W., Dai, J., Wang, L., Dunaway-Mariano, D., Allen, K.N.

(2005) Biochemistry 44: 9404-9416

Released	2005-08-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus lactis
Macromolecule	beta-phosphoglucomutase (protein)
Unique Ligands	MG

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1ZV7 \| pdb_00001zv7	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	SARS coronavirus FRA
Macromolecule	spike glycoprotein (protein)
Unique Ligands	CL

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1ZV8 \| pdb_00001zv8	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)
Unique Ligands	ACT, CAC, NA, ZN

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1ZVA \| pdb_00001zva	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)

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1ZVB \| pdb_00001zvb	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)

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2F8U \| pdb_00002f8u	Download File View File

G-quadruplex structure formed in human Bcl-2 promoter, hybrid form

Dai, J., Chen, D., Carver, M., Yang, D.

(2006) Nucleic Acids Res 34: 5133-5144

Released	2006-11-07
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPCPGPCPGPGPGPAPGPGPAPAPTPTPGPGPGPCPGPGP*G)-3' (nucleic acid)

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2HY9 \| pdb_00002hy9	Download File View File

Human telomere DNA quadruplex structure in K+ solution hybrid-1 form

Dai, J., Punchihewa, C., Jones, R.A., Hurley, L., Yang, D.

(2007) Nucleic Acids Res 35: 2440-2450

Released	2007-04-10
Method	SOLUTION NMR
Macromolecule	DNA (26-MER) (nucleic acid)

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2JPZ \| pdb_00002jpz	Download File View File

Human telomere DNA quadruplex structure in K+ solution hybrid-2 form

Dai, J., Carver, M., Punchihewa, C., Jones, R., Yang, D.

(2007) Nucleic Acids Res 35: 4927-4940

Released	2007-12-04
Method	SOLUTION NMR
Macromolecule	DNA (26-MER) (nucleic acid)

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2KKA \| pdb_00002kka	Download File View File

Human telomere DNA two-tetrad quadruplex structure in K+ solution

Zhang, Z., Dai, J., Yang, D.

(2010) Nucleic Acids Res 38: 1009-1021

Released	2009-12-15
Method	SOLUTION NMR
Macromolecule	5'-D(APGPGPGPTPTPAPGPGPGPTPTPAPIPGPGPTPTPAPGPGPGP*T)-3' (nucleic acid)

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2L7V \| pdb_00002l7v	Download File View File

Quindoline/G-quadruplex complex

Dai, J., Carver, M., Mathad, R., Yang, D.

(2011) J Am Chem Soc 133: 17673-17680

Released	2011-11-09
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPGPAPGPGPGPTPGPGPGPTPAPGPGPGPTPGPGPGPTPAPA)-3') (nucleic acid)
Unique Ligands	K, QUL

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2MC7 \| pdb_00002mc7	Download File View File

Structure of Salmonella MgtR

Jean-Francois, F., Dai, J., Yu, L., Myrick, A., Rubin, E., Fajer, P., Song, L., Zhou, H., Cross, T.

(2014) J Mol Biology 426: 436-446

Released	2013-10-30
Method	SOLID-STATE NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Regulatory peptide (protein)

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2MMU \| pdb_00002mmu	Download File View File

Structure of CrgA, a Cell Division Structural and Regulatory Protein from Mycobacterium tuberculosis, in Lipid Bilayers

Das, N., Dai, J., Hung, I., Rajagopalan, M., Zhou, H., Cross, T.A.

(2015) Proc Natl Acad Sci U S A 112: E119-E126

Released	2014-12-17
Method	SOLID-STATE NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	Cell division protein CrgA (protein)

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4QQV \| pdb_00004qqv	Download File View File

Extracellular domains of mouse IL-3 beta receptor

Jackson, C.J., Young, I.G., Murphy, J.M., Carr, P.D., Ewens, C.L., Dai, J., Ollis, D.L.

(2014) Biochem J 463: 393-403

Released	2014-09-03
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Mus musculus
Macromolecule	Interleukin-3 receptor class 2 subunit beta (protein)
Unique Ligands	NAG

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5ZQZ \| pdb_00005zqz	Download File View File

Structure of human mitochondrial trifunctional protein, tetramer

Liang, K., Li, N., Dai, J., Wang, X., Liu, P., Chen, X., Wang, C., Gao, N., Xiao, J.

(2018) Proc Natl Acad Sci U S A 115: 7039-7044

Released	2018-06-20
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Trifunctional enzyme subunit alpha, mitochondrial (protein) Trifunctional enzyme subunit beta, mitochondrial (protein)

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5ZRV \| pdb_00005zrv	Download File View File

Structure of human mitochondrial trifunctional protein, octamer

Liang, K., Li, N., Dai, J., Wang, X., Liu, P., Chen, X., Wang, C., Gao, N., Xiao, J.

(2018) Proc Natl Acad Sci U S A 115: 7039-7044

Released	2018-06-20
Method	ELECTRON MICROSCOPY 7.7 Å
Organisms	Homo sapiens
Macromolecule	Trifunctional enzyme subunit alpha, mitochondrial (protein) Trifunctional enzyme subunit beta, mitochondrial (protein)

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6RMN \| pdb_00006rmn	Download File View File

DNA mismatch repair proteins MLH1 and MLH3

Dai, J., Chervy, P., Legrand, P., Ropars, V., Charbonnier, J.B.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA mismatch repair protein MLH1 (protein) DNA mismatch repair protein MLH3 (protein)
Unique Ligands	ZN

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JCC | pdb_00001jcc

1S18 | pdb_00001s18

1S1D | pdb_00001s1d

1SWV | pdb_00001swv

1SWW | pdb_00001sww

1X95 | pdb_00001x95

1XAV | pdb_00001xav

1Z4N | pdb_00001z4n

1Z4O | pdb_00001z4o

1ZOL | pdb_00001zol

1ZV7 | pdb_00001zv7

1ZV8 | pdb_00001zv8

1ZVA | pdb_00001zva

1ZVB | pdb_00001zvb

2F8U | pdb_00002f8u

2HY9 | pdb_00002hy9

2JPZ | pdb_00002jpz

2KKA | pdb_00002kka

2L7V | pdb_00002l7v

2MC7 | pdb_00002mc7

2MMU | pdb_00002mmu

4QQV | pdb_00004qqv

5ZQZ | pdb_00005zqz

5ZRV | pdb_00005zrv

6RMN | pdb_00006rmn