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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Eigenbrot, C."

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Search Summary

This query matches 164 Structures.

Refinements

Structure Determination Methodology

experimental (164)

Scientific Name of Source Organism

	Homo sapiens (160)
	synthetic construct (9)
	Bos taurus (6)
	Mus musculus (4)
	Staphylococcus aureus (4)
	Hepacivirus hominis (2)
	Escherichia coli (1)
	Rattus norvegicus (1)
	Staphylococcus (1)

Taxonomy

	Eukaryota (164)
	other sequences (9)
	Bacteria (6)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (164)

Polymer Entity Type

Protein (164)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (29)
	2.0 - 2.5 (51)
	2.5 - 3.0 (60)
	3.0 - 3.5 (15)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (10)
	1995 - 1999 (2)
	2000 - 2004 (8)
	2005 - 2009 (8)
	2010 - 2014 (64)
	2015 - 2019 (64)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (89)
	Hydrolases (27)
	Oxidoreductases (18)

Symmetry Type

	Asymmetric (126)
	Cyclic (24)
	Dihedral (20)

SCOP Classification

	All beta proteins (36)
	Alpha and beta proteins (a+b) (94)
	Alpha and beta proteins (a/b) (19)
	Artifacts (31)
	Small proteins (13)
	All alpha proteins (3)
	Coiled coil proteins (2)
	Designed proteins (1)

AllSelected

1 to 25 of 164 Structures

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1AAL \| pdb_00001aal	Download File View File

STRUCTURAL EFFECTS INDUCED BY MUTAGENESIS AFFECTED BY CRYSTAL PACKING FACTORS: THE STRUCTURE OF A 30-51 DISULFIDE MUTANT OF BASIC PANCREATIC TRYPSIN INHIBITOR

Eigenbrot, C., Randal, M., Kossiakoff, A.A.

(1992) Proteins 14: 75-87

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	BOVINE PANCREATIC TRYPSIN INHIBITOR (protein)
Unique Ligands	PO4

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1AAP \| pdb_00001aap	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID BETA-PROTEIN PRECURSOR

Hynes, T.R., Randal, M., Kennedy, L.A., Eigenbrot, C., Kossiakoff, A.A.

(1990) Biochemistry 29: 10018-10022

Released	1991-10-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN (protein)

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1AGQ \| pdb_00001agq	Download File View File

GLIAL CELL-DERIVED NEUROTROPHIC FACTOR FROM RAT

Eigenbrot, C., Gerber, N.

(1997) Nat Struct Biol 4: 435-438

Released	1997-06-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	GLIAL CELL-DERIVED NEUROTROPHIC FACTOR (protein)

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1DVA \| pdb_00001dva	Download File View File

Crystal Structure of the Complex Between the Peptide Exosite Inhibitor E-76 and Coagulation Factor VIIA

Eigenbrot, C., Ultsch, M.H.

(2000) Nature 404: 465-470

Released	2000-05-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DES-GLA FACTOR VIIA (HEAVY CHAIN) (protein) DES-GLA FACTOR VIIA (LIGHT CHAIN) (protein) PEPTIDE E-76 (protein)
Unique Ligands	0Z6, CA, CAC, FUC, FUL, GLC
Unique branched monosaccharides	BGC, GAL

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1FGV \| pdb_00001fgv	Download File View File

X-RAY STRUCTURES OF FRAGMENTS FROM BINDING AND NONBINDING VERSIONS OF A HUMANIZED ANTI-CD18 ANTIBODY: STRUCTURAL INDICATIONS OF THE KEY ROLE OF VH RESIDUES 59 TO 65

Eigenbrot, C., Kessler, J.

(1994) Proteins 18: 49-62

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	H52 FV (HEAVY CHAIN) (protein) H52 FV (LIGHT CHAIN) (protein)

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1FVC \| pdb_00001fvc	Download File View File

X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING

Eigenbrot, C., Randal, M., Kossiakoff, A.A., Presta, L.

(1993) J Mol Biology 229: 969-995

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	IGG1-KAPPA 4D5 FV (HEAVY CHAIN) (protein) IGG1-KAPPA 4D5 FV (LIGHT CHAIN) (protein)

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1FVD \| pdb_00001fvd	Download File View File

X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING

Eigenbrot, C., Presta, L., Randal, M., Kossiakoff, A.A.

(1993) J Mol Biology 229: 969-995

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) (protein)

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1FVE \| pdb_00001fve	Download File View File

X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING

Eigenbrot, C., Randal, M., Presta, L., Kossiakoff, A.A.

(1993) J Mol Biology 229: 969-995

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) (protein)

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1ICW \| pdb_00001icw	Download File View File

INTERLEUKIN-8, MUTANT WITH GLU 38 REPLACED BY CYS AND CYS 50 REPLACED BY ALA

Eigenbrot, C., Lowman, H.B., Chee, L., Artis, D.R.

(1997) Proteins 27: 556-566

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-8 (protein)

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1JBU \| pdb_00001jbu	Download File View File

Coagulation Factor VII Zymogen (EGF2/Protease) in Complex with Inhibitory Exosite Peptide A-183

Eigenbrot, C., Kirchhofer, D., Dennis, M.S., Santell, L., Lazarus, R.A., Stamos, J., Ultsch, M.H.

(2001) Structure 9: 627-636

Released	2001-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	COAGULATION FACTOR VII (protein) Peptide exosite inhibitor A-183 (protein)
Unique Ligands	BEN, SO4

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1M14 \| pdb_00001m14	Download File View File

Tyrosine Kinase Domain from Epidermal Growth Factor Receptor

Stamos, J., Sliwkowski, M.X., Eigenbrot, C.

(2002) J Biological Chem 277: 46265-46272

Released	2002-09-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)

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1M17 \| pdb_00001m17	Download File View File

Epidermal Growth Factor Receptor tyrosine kinase domain with 4-anilinoquinazoline inhibitor erlotinib

Stamos, J., Sliwkowski, M.X., Eigenbrot, C.

(2002) J Biological Chem 277: 46265-46272

Released	2002-09-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	epidermal growth factor receptor (protein)
Unique Ligands	AQ4

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1PG7 \| pdb_00001pg7	Download File View File

Murine 6A6 Fab in complex with humanized anti-Tissue Factor D3H44 Fab

Eigenbrot, C., Meng, Y.G., Krishnamurthy, R., Lipari, M.T., Presta, L., Devaux, B., Wong, T., Moran, P., Bullens, S., Kirchhofer, D.

(2003) J Mol Biology 331: 433-446

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	humanized antibody D3H44 (protein) murine antibody 6A6 Fab fragment (protein)

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1QE6 \| pdb_00001qe6	Download File View File

INTERLEUKIN-8 WITH AN ADDED DISULFIDE BETWEEN RESIDUES 5 AND 33 (L5C/H33C)

Gerber, N., Lowman, H., Artis, D.R., Eigenbrot, C.

(2000) Proteins 38: 361-367

Released	2000-03-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-8 VARIANT (protein)
Unique Ligands	SO4

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1RPQ \| pdb_00001rpq	Download File View File

High Affinity IgE Receptor (alpha chain) Complexed with Tight-Binding E131 'zeta' Peptide from Phage Display

Stamos, J., Eigenbrot, C., Nakamura, G.R., Reynolds, M.E., Yin, J.P., Lowman, H.B., Fairbrother, W.J., Starovasnik, M.A.

(2004) Structure 12: 1289-1301

Released	2004-07-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	High affinity immunoglobulin epsilon receptor alpha-subunit precursor (protein) Peptide E131 (protein)
Unique Ligands	CIT, NAG, SO4
Unique branched monosaccharides	BMA, NAG

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1SI5 \| pdb_00001si5	Download File View File

Protease-like domain from 2-chain hepatocyte growth factor

Kirchhofer, D., Yao, X., Peek, M., Eigenbrot, C., Lipari, M.T., Billeci, K.L., Maun, H.R., Moran, P., Santell, L., Lazarus, R.A.

(2004) J Biological Chem 279: 39915-39924

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens
Macromolecule	hepatocyte growth factor (protein)

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1YBW \| pdb_00001ybw	Download File View File

Protease domain of HGFA with no inhibitor

Shia, S., Stamos, J., Kirchhofer, D., Fan, B., Wu, J., Corpuz, R.T., Santell, L., Lazarus, R.A., Eigenbrot, C.

(2005) J Mol Biology 346: 1335-1349

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator precursor (protein)
Unique Ligands	NAG

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1YC0 \| pdb_00001yc0	Download File View File

short form HGFA with first Kunitz domain from HAI-1

Shia, S., Stamos, J., Kirchhofer, D., Fan, B., Wu, J., Corpuz, R.T., Santell, L., Lazarus, R.A., Eigenbrot, C.

(2005) J Mol Biology 346: 1335-1349

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator (protein) Kunitz-type protease inhibitor 1 (protein)
Unique Ligands	PO4

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1YGC \| pdb_00001ygc	Download File View File

Short Factor VIIa with a small molecule inhibitor

Olivero, A.G., Eigenbrot, C., Goldsmith, R., Robarge, K., Artis, D.R., Flygare, J., Rawson, T., Refino, C., Bunting, S., Kirchhofer, D.

(2005) J Biological Chem 280: 9160-9169

Released	2005-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein)
Unique Ligands	905, CA, SO4

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2FGW \| pdb_00002fgw	Download File View File

X-RAY STRUCTURES OF FRAGMENTS FROM BINDING AND NONBINDING VERSIONS OF A HUMANIZED ANTI-CD18 ANTIBODY: STRUCTURAL INDICATIONS OF THE KEY ROLE OF VH RESIDUES 59 TO 65

Eigenbrot, C., Kessler, J.

(1994) Proteins 18: 49-62

Released	1994-04-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	H52 FAB (HEAVY CHAIN) (protein) H52 FAB (LIGHT CHAIN) (protein)

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2R0K \| pdb_00002r0k	Download File View File

Protease domain of HGFA with inhibitor Fab58

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain of Fab58, Fab portion only (protein) antibody light chain of Fab58 (protein)

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2R0L \| pdb_00002r0l	Download File View File

Short Form HGFA with Inhibitory Fab75

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain, Fab portion only (protein) antibody light chain (protein)
Unique branched monosaccharides	BMA, NAG

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2WUB \| pdb_00002wub	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	BMA, NAG

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2WUC \| pdb_00002wuc	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp and Ac-KQLR-chloromethylketone

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-KQLR-CHLOROMETHYLKETONE INHIBITOR (protein) FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	NAG

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3K2U \| pdb_00003k2u	Download File View File

Crystal structure of HGFA in complex with the allosteric inhibitory antibody Fab40

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614-1624

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Antibody, Fab fragment, Heavy Chain (protein) Antibody, Fab fragment, Light Chain (protein) Hepatocyte growth factor activator long chain (protein) Hepatocyte growth factor activator short chain (protein)
Unique branched monosaccharides	NAG

1 to 25 of 164 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AAL | pdb_00001aal

1AAP | pdb_00001aap

1AGQ | pdb_00001agq

1DVA | pdb_00001dva

1FGV | pdb_00001fgv

1FVC | pdb_00001fvc

1FVD | pdb_00001fvd

1FVE | pdb_00001fve

1ICW | pdb_00001icw

1JBU | pdb_00001jbu

1M14 | pdb_00001m14

1M17 | pdb_00001m17

1PG7 | pdb_00001pg7

1QE6 | pdb_00001qe6

1RPQ | pdb_00001rpq

1SI5 | pdb_00001si5

1YBW | pdb_00001ybw

1YC0 | pdb_00001yc0

1YGC | pdb_00001ygc

2FGW | pdb_00002fgw

2R0K | pdb_00002r0k

2R0L | pdb_00002r0l

2WUB | pdb_00002wub

2WUC | pdb_00002wuc

3K2U | pdb_00003k2u