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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Floehr, J."

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Search Summary

This query matches 132 Structures.

Refinements

Structure Determination Methodology

experimental (132)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (50)
	Homo sapiens (26)
	synthetic construct (15)
	Streptomyces argillaceus (8)
	Pseudomonas protegens Pf-5 (7)
	Bacillus cereus (6)
	Mycobacterium tuberculosis (6)
	Escherichia coli (4)
	Kitasatospora aureofaciens (3)
	Mus musculus (3)

More...

Taxonomy

	Bacteria (96)
	Eukaryota (27)
	other sequences (15)
	Archaea (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (131)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (121)
	DNA (32)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (22)
	2.0 - 2.5 (50)
	2.5 - 3.0 (33)
	3.0 - 3.5 (15)
	3.5 - 4.0 (3)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	2005 - 2009 (13)
	2010 - 2014 (13)
	2015 - 2019 (49)
	2020 - 2024 (52)
	2025 - 2029 (5)

Enzyme Classification Name

	Transferases (52)
	Hydrolases (28)
	Oxidoreductases (4)
	Isomerases (1)

Symmetry Type

	Cyclic (44)
	Asymmetric (33)
	Dihedral (51)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a/b) (18)
	Artifacts (12)
	All beta proteins (6)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 132 Structures

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2A1I \| pdb_00002a1i	Download File View File

Crystal Structure of the Central Domain of Human ERCC1

Tsodikov, O.V., Enzlin, J.H., Scharer, O.D., Ellenberger, T.

(2005) Proc Natl Acad Sci U S A 102: 11236-11241

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DNA excision repair protein ERCC-1 (protein)
Unique Ligands	HG

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2A1J \| pdb_00002a1j	Download File View File

Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1

Tsodikov, O.V., Enzlin, J.H., Scharer, O.D., Ellenberger, T.

(2005) Proc Natl Acad Sci U S A 102: 11236-11241

Released	2005-08-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	DNA excision repair protein ERCC-1 (protein) DNA repair endonuclease XPF (protein)
Unique Ligands	HG

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2HII \| pdb_00002hii	Download File View File

heterotrimeric PCNA sliding clamp

Pascal, J.M., Tsodikov, O.V., Ellenberger, T.

(2006) Mol Cell 24: 279-291

Released	2006-11-07
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Saccharolobus solfataricus
Macromolecule	PCNA1 (SSO0397) (protein) PCNA2 (SSO1047) (protein) PCNA3 (SSO0405) (protein)

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2HIK \| pdb_00002hik	Download File View File

heterotrimeric PCNA sliding clamp

Pascal, J.M., Tsodikov, O.V., Ellenberger, T.

(2006) Mol Cell 24: 279-291

Released	2006-11-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	PCNA1 (SSO0397) (protein) PCNA2 (SSO1047) (protein) PCNA3 (SSO0405) (protein)

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2JNW \| pdb_00002jnw	Download File View File

Solution structure of a ERCC1-XPA heterodimer

Tsodikov, O.V., Ivanov, D., Orelli, B., Staresincic, L., Scharer, O.D., Wagner, G.

(2007) EMBO J 26: 4768-4776

Released	2007-10-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA excision repair protein ERCC-1 (protein) DNA-repair protein complementing XP-A cells (protein)

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2ONT \| pdb_00002ont	Download File View File

A swapped dimer of the HIV-1 capsid C-terminal domain

Ivanov, D., Tsodikov, O.V., Kasanov, J., Ellenberger, T., Wagner, G., Collins, T.

(2007) Proc Natl Acad Sci U S A 104: 4353-4358

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Capsid protein p24 (protein)

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2R5U \| pdb_00002r5u	Download File View File

Crystal structure of the N-terminal domain of DnaB helicase from Mycobacterium tuberculosis

Biswas, T., Tsodikov, O.V.

(2008) FEBS J 275: 3064-3071

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Replicative DNA helicase (protein)
Unique Ligands	GOL

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2R8E \| pdb_00002r8e	Download File View File

Crystal structure of YrbI from Escherichia coli in complex with Mg

Tsodikov, O.V., Aggarwal, P., Rubin, J.R., Stuckey, J.A., Woodard, R., Biswas, T.

(2009) J Biological Chem 284: 30594-30603

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli O6
Macromolecule	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CL, MG

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2R8X \| pdb_00002r8x	Download File View File

Crystal structure of YrbI phosphatase from Escherichia coli

Tsodikov, O.V., Aggarwal, P., Rubin, J.R., Stuckey, J.A., Woodard, R.W., Biswas, T.

(2009) J Biological Chem 284: 30594-30603

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CL

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2R8Y \| pdb_00002r8y	Download File View File

Crystal structure of YrbI phosphatase from Escherichia coli in a complex with Ca

Tsodikov, O.V., Aggarwal, P., Rubin, J.R., Stuckey, J.A., Woodard, R.W., Biswas, T.

(2009) J Biological Chem 284: 30594-30603

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	YrbI from Escherichia coli (protein)
Unique Ligands	CA, CL

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2R8Z \| pdb_00002r8z	Download File View File

Crystal structure of YrbI phosphatase from Escherichia coli in complex with a phosphate and a calcium ion

Tsodikov, O.V., Aggarwal, P., Rubin, J.R., Stuckey, J.A., Woodard, R.W., Biswas, T.

(2009) J Biological Chem 284: 30594-30603

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli O6
Macromolecule	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CA, PO4

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3HYC \| pdb_00003hyc	Download File View File

Crystal structure of E. coli phosphatase YrbI, with Mg, tetragonal form

Tsodikov, O.V., Biswas, T.

(2009) J Biological Chem 284: 30594-30603

Released	2009-09-01
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Escherichia coli B
Macromolecule	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CL, MG

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3I6B \| pdb_00003i6b	Download File View File

Crystal structure of YrbI lacking the last 8 residues, in complex with Kdo and inorganic phosphate

Biswas, T., Tsodikov, O.V.

(2009) J Biological Chem 284: 30594-30603

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Escherichia coli B
Macromolecule	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	KDO, MG, PO4

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3ITW \| pdb_00003itw	Download File View File

Crystal structure of TioX from Micromonospora sp. ML1

Biswas, T., Garneau-Tsodikova, S., Tsodikov, O.V.

(2010) J Mol Biology 397: 495-507

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Micromonospora sp. ML1
Macromolecule	Protein tioX (protein)

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3K6Y \| pdb_00003k6y	Download File View File

Crystal structure of Rv3671c protease from M. tuberculosis, active form

Biswas, T., Small, J., Vandal, O., Ehrt, S., Tsodikov, O.V.

(2010) Structure 18: 1353-1363

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE (protein)

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3K6Z \| pdb_00003k6z	Download File View File

Crystal structure of Rv3671c protease, inactive form

Biswas, T., Small, J., Vandal, O., Ehrt, S., Tsodikov, O.V.

(2010) Structure 18: 1353-1363

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE (protein)

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3LT3 \| pdb_00003lt3	Download File View File

Crystal structure of Rv3671c from M. tuberculosis H37Rv, Ser343Ala mutant, inactive form

Biswas, T., Small, J., Vandal, O., Ehrt, S., Tsodikov, O.V.

(2010) Structure 18: 1353-1363

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE (protein)

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3PVP \| pdb_00003pvp	Download File View File

Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA

Tsodikov, O.V., Biswas, T.

(2011) J Mol Biology 410: 461-476

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Chromosomal replication initiator protein dnaA (protein) DNA (5'-D(CPGPTPTPAPTPCPCPAPCPAPAPC)-3') (nucleic acid) DNA (5'-D(GPTPTPGPTPGPGPAPTPAPAPCPG)-3') (nucleic acid)

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3PVV \| pdb_00003pvv	Download File View File

Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA

Tsodikov, O.V., Biswas, T.

(2011) J Mol Biology 410: 461-476

Released	2011-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Chromosomal replication initiator protein dnaA (protein) DNA (5'-D(CPGPTPTPGPTPCPCPAPCPAPAPC)-3') (nucleic acid) DNA (5'-D(GPTPTPGPTPGPGPAPCPAPAPCPG)-3') (nucleic acid)

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3R1K \| pdb_00003r1k	Download File View File

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis H37Rv in complex with CoA and an acetamide moiety

Biswas, T., Chen, W., Garneau-Tsodikova, S., Tsodikov, O.V.

(2011) Proc Natl Acad Sci U S A 108: 9804-9808

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Enhanced intracellular survival protein (protein)
Unique Ligands	ACM, COA

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3U9B \| pdb_00003u9b	Download File View File

Structure of apo-CATI

Biswas, T., Garneau-Tsodikova, S., Tsodikov, O.V.

(2012) Protein Sci 21: 520-530

Released	2012-02-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	Chloramphenicol acetyltransferase (protein)

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3U9F \| pdb_00003u9f	Download File View File

Structure of CATI in complex with chloramphenicol

Biswas, T., Garneau-Tsodikova, S., Tsodikov, O.V.

(2012) Protein Sci 21: 520-530

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Chloramphenicol acetyltransferase (protein)
Unique Ligands	CLM

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4I9F \| pdb_00004i9f	Download File View File

Crystal structure of glycerol phosphate phosphatase Rv1692 from Mycobacterium tuberculosis in complex with calcium

Biswas, T., Larrouy-Maumus, G., de Carvalho, L.P., Tsodikov, O.V.

(2013) Proc Natl Acad Sci U S A 110: 11320-11325

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Glycerol 3-phosphate phosphatase (protein)
Unique Ligands	CA, CL

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4I9G \| pdb_00004i9g	Download File View File

Crystal structure of glycerol phosphate phosphatase Rv1692 from Mycobacterium tuberculosis in complex with magnesium

Biswas, T., Larrouy-Maumus, G., de Carvalho, L.P., Tsodikov, O.V.

(2013) Proc Natl Acad Sci U S A 110: 11320-11325

Released	2013-07-10
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Glycerol 3-phosphate phosphatase (protein)
Unique Ligands	MG

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4IJJ \| pdb_00004ijj	Download File View File

Structure of transcription factor DksA2 from Pseudomonas aeruginosa

Biswas, T., Furman, R., Artsimovitch, I., Tsodikov, O.V.

(2013) FEBS Lett 587: 614-619

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	Putative C4-type zinc finger protein, DksA/TraR family (protein)
Unique Ligands	SO4

1 to 25 of 132 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2A1I | pdb_00002a1i

2A1J | pdb_00002a1j

2HII | pdb_00002hii

2HIK | pdb_00002hik

2JNW | pdb_00002jnw

2ONT | pdb_00002ont

2R5U | pdb_00002r5u

2R8E | pdb_00002r8e

2R8X | pdb_00002r8x

2R8Y | pdb_00002r8y

2R8Z | pdb_00002r8z

3HYC | pdb_00003hyc

3I6B | pdb_00003i6b

3ITW | pdb_00003itw

3K6Y | pdb_00003k6y

3K6Z | pdb_00003k6z

3LT3 | pdb_00003lt3

3PVP | pdb_00003pvp

3PVV | pdb_00003pvv

3R1K | pdb_00003r1k

3U9B | pdb_00003u9b

3U9F | pdb_00003u9f

4I9F | pdb_00004i9f

4I9G | pdb_00004i9g

4IJJ | pdb_00004ijj