RCSB PDB: Search

1ONK \| pdb_00001onk	Download File View File

Mistletoe lectin I from viscum album

Gabdoulkhakov, A.G., Savoshkina, Y., Krauspenhaar, R., Stoeva, S., Konareva, N., Kornilov, V., Kornev, A.N., Voelter, W., Nikonov, S.V., Betzel, C., Mikhailov, A.M.

To be published

Released	2004-02-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Viscum album
Macromolecule	Beta-galactoside specific lectin I A chain (protein) Galactose specific lectin I B chain (protein)
Unique Ligands	AZI, GOL, NAG, PO4

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1RYZ \| pdb_00001ryz	Download File View File

Uridine Phosphorylase from Salmonella typhimurium. Crystal Structure at 2.9 A Resolution

Dontsova, M.V., Gabdoulkhakov, A.G., Lyashenko, A.V., Nikonov, S.V., Ealick, S.E., Mikhailov, A.M.

To be published

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	ACY

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1RZO \| pdb_00001rzo	Download File View File

Agglutinin from Ricinus communis with galactoaza

Gabdoulkhakov, A.G., Savochkina, Y., Konareva, N., Krauspenhaar, R., Stoeva, S., Nikonov, S.V., Voelter, W., Betzel, C., Mikhailov, A.M.

To be published

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Ricinus communis
Macromolecule	Agglutinin (protein)
Unique Ligands	GAL, SO4

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1SZ6 \| pdb_00001sz6	Download File View File

MISTLETOE LECTIN I FROM VISCUM ALBUM. CRYSTAL STRUCTURE AT 2.05 A RESOLUTION

Gabdoulkhakov, A.G., Guhlistova, N.E., Lyashenko, A.V., Krauspenhaar, R., Stoeva, S., Voelter, W., Nikonov, S.V., Betzel, C., Mikhailov, A.M.

To be published

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Viscum album
Macromolecule	BETA-GALACTOSIDE SPECIFIC LECTIN I B CHAIN (protein) RRNA N-GLYCOSIDASE A CHAIN (protein)
Unique Ligands	AZI, CL, GOL, NAG, SO4

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1Y1Q \| pdb_00001y1q	Download File View File

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uridine-5p-monophosphate and Sulfate Ion at 2.35A Resolution

Gabdoulkhakov, A.G., Dontsova, M.V., Kachalova, G.S., Betzel, C., Ealick, S.E., Mikhailov, A.M.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	SO4, U5P

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1Y1R \| pdb_00001y1r	Download File View File

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Inhibitor and Phosphate Ion at 2.11A Resolution

Dontsova, M.V., Gabdoulkhakov, A.G., Kachalova, G.S., Betzel, C., Ealick, S.E., Mikhailov, A.M.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	BJE, PO4

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1Y1S \| pdb_00001y1s	Download File View File

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Sulfate Ion at 2.55A Resolution

Gabdoulkhakov, A.G., Dontsova, M.V., Kachalova, G.S., Betzel, C., Ealick, S.E., Mikhailov, A.M.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	SO4, URA

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1Y1T \| pdb_00001y1t	Download File View File

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.77A Resolution

Gabdoulkhakov, A.G., Dontsova, M.V., Kachalova, G.S., Betzel, C., Ealick, S.E., Mikhailov, A.M.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	GOL, SO4

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1ZL2 \| pdb_00001zl2	Download File View File

Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with 2,2'-anhydrouridine and phosphate ion at 1.85A resolution

Gabdoulkhakov, A.G., Dontsova, M.V., Lashkov, A.A., Betzel, C., Ealick, S., Mikhailov, A.M.

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	ANU, PO4

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2H5U \| pdb_00002h5u	Download File View File

Crystal structure of laccase from Cerrena maxima at 1.9A resolution

Lyashenko, A.V., Gabdoulkhakov, A.G., Zaitsev, V.N., Lamzin, V.S., Lindley, P.F., Bento, I., Betzel, C., Zhukhlistova, N.E., Zhukova, Y.N., Mikhailov, A.M.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 954-957

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes maxima
Macromolecule	laccase (protein)
Unique Ligands	CU, NAG
Unique branched monosaccharides	MAN, NAG

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2HN9 \| pdb_00002hn9	Download File View File

Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 2.12A resolution

Gabdoulkhakov, A.G., Timofeev, V.I., Mikhailov, A.M.

To be published

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4, TDR

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2HSW \| pdb_00002hsw	Download File View File

Crystal structure of the uridine phosphorylase from Salmonella typhimurium in unliganded state at 1.99A resolution

Timofeev, V.I., Dontsova, M.V., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4

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2I8A \| pdb_00002i8a	Download File View File

Salmonella typhimurium liganded by phosphate ion at 1.64A resolution

Timofeev, V.I., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4

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2IQ5 \| pdb_00002iq5	Download File View File

Unliganded Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium at 1.90 A Resolution

Timofeev, V.I., Dontsova, M.V., Gabdoulkhakov, A.G., Pavlyuk, B.P., Mikhailov, A.M.

To be published

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)

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2OAW \| pdb_00002oaw	Download File View File

Structure of SHH variant of "Bergerac" chimera of spectrin SH3

Gabdoulkhakov, A.G., Gushchina, L.V., Nikulin, A.D., Nikonov, S.V., Viguera, A.R., Serrano, L., Filimonov, V.V.

(2009) Biophys Chem 139: 106-115

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	Spectrin alpha chain, brain (protein)
Unique Ligands	CL

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2OXF \| pdb_00002oxf	Download File View File

X-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium in homodimeric form at 1.76A resolution

Timofeev, V.I., Pavlyk, B.P., Lashkov, A.A., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2008-02-26
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	GOL

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2PGA \| pdb_00002pga	Download File View File

X-ray Structure of the Uridine Phosphorylase From SALMONELLA TYPHIMURIUM in Complex with Inhibitor and Phosphate and Potassium Ion at 1.74 A Resolution

Timofeev, V.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	ANU, K, PO4

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2QDK \| pdb_00002qdk	Download File View File

X-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium at 1.62A resolution

Timofeev, V.I., Pavlyuk, B.P., Lashkov, A.A., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	Uridine phosphorylase (protein)

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2RG9 \| pdb_00002rg9	Download File View File

Crystal structure of viscum album mistletoe lectin I in native state at 1.95 A resolution, comparison of structure active site conformation in ricin and in viscumin

Karpechenko, N.U., Timofeev, V.I., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2008-10-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Viscum album
Macromolecule	Beta-galactoside-specific lectin 1 chain A isoform 1 (protein) Beta-galactoside-specific lectin 1 chain B (protein)
Unique Ligands	AZI, CL, GOL, NAG, SO4

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2RJ3 \| pdb_00002rj3	Download File View File

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Phosphate Ion at 2.49A Resolution

Timofeev, V.I., Pavlyuk, B.P., Lashkov, A.A., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4, URA

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3DDO \| pdb_00003ddo	Download File View File

X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with by Phosphate Ion at 1.5A Resolution

Lashkov, A.A., Mikhailov, A.M., Gabdoulkhakov, A.G.

To be published

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4

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3L77 \| pdb_00003l77	Download File View File

X-ray structure alcohol dehydrogenase from archaeon Thermococcus sibiricus complexed with 5-hydroxy-NADP

Lyashenko, A.V., Lashkov, A.A., Gabdoulkhakov, A.G., Mikhailov, A.M.

To be published

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermococcus sibiricus MM 739
Macromolecule	Short-chain alcohol dehydrogenase (protein)
Unique Ligands	EDO, GOL, NJP, PG4

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3PEN \| pdb_00003pen	Download File View File

Structure of archaeal initiation factor aIF2gamma subunit delta 37-47 from Sulfolobus solfataricus in the GDP-bound form.

Arkhipova, V.I., Lazopulo, A.M., Lazopulo, S.M., Garber, M.B., Nikonov, O.S., Nikonov, S.V., Gabdoulkhakov, A.G.

To be published

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.3005 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Translation initiation factor 2 subunit gamma (protein)
Unique Ligands	5GP, GDP, MG

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3SJZ \| pdb_00003sjz	Download File View File

The structure of aIF2gamma subunit delta 41-45 from archaeon Sulfolobus solfataricus complexed with GDP and GDPNP

Arkhipova, V.I., Lazopulo, S.M., Lazopulo, A.M., Nikonov, O.S., Stolboushkina, E.A., Gabdoulkhakov, A.G., Garber, M.B., Nikonov, S.V.

To be published

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	Translation initiation factor 2 subunit gamma (protein)
Unique Ligands	BME, GDP, GNP

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4E1V \| pdb_00004e1v	Download File View File

X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with 5-Fluorouracil at 2.15 A Resolution

Lashkov, A.A., Sotnichenko, S.E., Prokofev, I.I., Gabdoulkhakov, A.G., Mikhailov, A.M.

(2012) Acta Crystallogr D Biol Crystallogr 68: 968-974

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	EDO, GOL, K, URF

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ONK | pdb_00001onk

1RYZ | pdb_00001ryz

1RZO | pdb_00001rzo

1SZ6 | pdb_00001sz6

1Y1Q | pdb_00001y1q

1Y1R | pdb_00001y1r

1Y1S | pdb_00001y1s

1Y1T | pdb_00001y1t

1ZL2 | pdb_00001zl2

2H5U | pdb_00002h5u

2HN9 | pdb_00002hn9

2HSW | pdb_00002hsw

2I8A | pdb_00002i8a

2IQ5 | pdb_00002iq5

2OAW | pdb_00002oaw

2OXF | pdb_00002oxf

2PGA | pdb_00002pga

2QDK | pdb_00002qdk

2RG9 | pdb_00002rg9

2RJ3 | pdb_00002rj3

3DDO | pdb_00003ddo

3L77 | pdb_00003l77

3PEN | pdb_00003pen

3SJZ | pdb_00003sjz

4E1V | pdb_00004e1v