RCSB PDB: Search

2GDQ \| pdb_00002gdq	Download File View File

Crystal structure of mandelate racemase/muconate lactonizing enzyme from Bacillus subtilis at 1.8 A resolution

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Emtage, S., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Burley, S.K., Sali, A., Babbitt, P., Pieper, U., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-04-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	yitF (protein)

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2GGE \| pdb_00002gge	Download File View File

Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A

Malashkevich, V.N., Sauder, J.M., Schwinn, K.D., Emtage, S., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Burley, S.K., Sali, A., Babbitt, P., Pieper, U., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Bacillus subtilis
Macromolecule	yitF (protein)
Unique Ligands	CL, MG

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2HHL \| pdb_00002hhl	Download File View File

Crystal structure of the human small CTD phosphatase 3 isoform 1

Malashkevich, V.N., Toro, R., Ramagopal, U., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2007) J Struct Funct Genomics 8: 121-140

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CTD small phosphatase-like protein (protein)
Unique Ligands	KEG

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2IJQ \| pdb_00002ijq	Download File View File

Crystal structure of protein rrnAC1037 from Haloarcula marismortui, Pfam DUF309

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Haloarcula marismortui
Macromolecule	Hypothetical protein (protein)

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2O34 \| pdb_00002o34	Download File View File

Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	Hypothetical protein (protein)
Unique Ligands	NA

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2PJU \| pdb_00002pju	Download File View File

Crystal structure of propionate catabolism operon regulatory protein prpR

Ramagopal, U.A., Toro, R., Gilmore, M., Wu, B., Koss, J., Groshong, C., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Propionate catabolism operon regulatory protein (protein)

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2PPG \| pdb_00002ppg	Download File View File

Crystal structure of putative isomerase from Sinorhizobium meliloti

Ramagopal, U.A., Toro, R., Dickey, M., Logan, C., Groshong, C., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Putative isomerase (protein)

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2Q01 \| pdb_00002q01	Download File View File

Crystal structure of glucuronate isomerase from Caulobacter crescentus

Patskovsky, Y., Bonanno, J., Sridhar, V., Sauder, J.M., Freeman, J., Powell, A., Koss, J., Groshong, C., Gheyi, T., Wasserman, S.R., Raushel, F., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	Uronate isomerase (protein)
Unique Ligands	K

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2QDD \| pdb_00002qdd	Download File View File

Crystal structure of a member of enolase superfamily from Roseovarius nubinhibens ISM

Patskovsky, Y., Bonanno, J., Sauder, J.M., Gilmore, J.M., Iizuka, M., Groshong, C., Gheyi, T., Sojitra, S., Wasserman, S.R., Koss, J., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Roseovarius nubinhibens ISM
Macromolecule	Mandelate racemase/muconate lactonizing enzyme (protein)
Unique Ligands	GOL

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2QF9 \| pdb_00002qf9	Download File View File

Crystal structure of putative secreted protein DUF305 from Streptomyces coelicolor

Ramagopal, U.A., Rutter, M., Adams, J., Toro, R., Groshong, C., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative secreted protein (protein)
Unique Ligands	EDO

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2R5X \| pdb_00002r5x	Download File View File

Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426

Ramagopal, U.A., Patskovsky, Y., Shi, W., Toro, R., Meyer, A.J., Freeman, J., Wu, B., Koss, J., Groshong, C., Rodgers, L., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Uncharacterized conserved protein (protein)

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2R9G \| pdb_00002r9g	Download File View File

Crystal structure of the C-terminal fragment of AAA ATPase from Enterococcus faecium

Ramagopal, U.A., Patskovsky, Y., Bonanno, J.B., Shi, W., Toro, R., Meyer, A.J., Rutter, M., Wu, B., Groshong, C., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Enterococcus faecium DO
Macromolecule	AAA ATPase, central region (protein)
Unique Ligands	ACT, GOL

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2RDM \| pdb_00002rdm	Download File View File

Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419

Patskovsky, Y., Yan, Q., Zhan, C., Toro, R., Meyer, A.J., Gilmore, M., Hu, S., Groshong, C., Rodgers, L., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Sinorhizobium medicae WSM419
Macromolecule	Response regulator receiver protein (protein)
Unique Ligands	GOL

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3BH1 \| pdb_00003bh1	Download File View File

Crystal structure of protein DIP2346 from Corynebacterium diphtheriae

Patskovsky, Y., Sridhar, V., Bonanno, J.B., Gilmore, M., Iizuka, M., Groshong, C., Gheyi, T., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Corynebacterium diphtheriae NCTC 13129
Macromolecule	UPF0371 protein DIP2346 (protein)
Unique Ligands	GOL

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3BJS \| pdb_00003bjs	Download File View File

Crystal structure of a member of enolase superfamily from Polaromonas sp. JS666

Patskovsky, Y., Bonanno, J.B., Ozyurt, S., Dickey, M., Sauder, J.M., Reyes, C., Groshong, C., Gheyi, T., Smith, D., Wasserman, S.R., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Polaromonas sp. JS666
Macromolecule	Mandelate racemase/muconate lactonizing enzyme (protein)
Unique Ligands	MG

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3BQ9 \| pdb_00003bq9	Download File View File

Crystal structure of predicted nucleotide-binding protein from Idiomarina baltica OS145

Patskovsky, Y., Toro, R., Meyer, A.J., Dickey, M., Eberle, M., Koss, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-01-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Idiomarina baltica OS145
Macromolecule	Predicted Rossmann fold nucleotide-binding domain-containing protein (protein)
Unique Ligands	GOL, SO4

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3BUT \| pdb_00003but	Download File View File

Crystal structure of protein Af_0446 from Archaeoglobus fulgidus

Bonanno, J.B., Patskovsky, Y., Ozyurt, S., Ashok, S., Zhang, F., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Uncharacterized protein Af_0446 (protein)

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3C3M \| pdb_00003c3m	Download File View File

Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1

Patskovsky, Y., Ramagopal, U.A., Toro, R., Meyer, A.J., Dickey, M., Chang, S., Groshong, C., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-02-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanoculleus marisnigri JR1
Macromolecule	Response regulator receiver protein (protein)
Unique Ligands	GOL

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3C6F \| pdb_00003c6f	Download File View File

Crystal structure of protein Bsu07140 from Bacillus subtilis

Patskovsky, Y., Min, T., Zhang, A., Adams, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	YetF protein (protein)
Unique Ligands	GOL

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3CFY \| pdb_00003cfy	Download File View File

Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus

Patskovsky, Y., Ramagopal, U.A., Fong, R., Freeman, J., Iizuka, M., Groshong, C., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative LuxO repressor protein (protein)

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3CG0 \| pdb_00003cg0	Download File View File

Crystal structure of signal receiver domain of modulated diguanylate cyclase from Desulfovibrio desulfuricans G20, an example of alternate folding

Patskovsky, Y., Bonanno, J.B., Romero, R., Gilmore, M., Chang, S., Groshong, C., Koss, J., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Oleidesulfovibrio alaskensis G20
Macromolecule	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor (protein)

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3CNB \| pdb_00003cnb	Download File View File

Crystal structure of signal receiver domain of DNA binding response regulator protein (merR) from Colwellia psychrerythraea 34H

Patskovsky, Y., Romero, R., Freeman, J., Hu, S., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Colwellia psychrerythraea 34H
Macromolecule	DNA-binding response regulator, merR family (protein)

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3CRN \| pdb_00003crn	Download File View File

Crystal structure of response regulator receiver domain protein (CheY-like) from Methanospirillum hungatei JF-1

Hiner, R.L., Toro, R., Patskovsky, Y., Freeman, J., Chang, S., Smith, D., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Methanospirillum hungatei JF-1
Macromolecule	Response regulator receiver domain protein, CheY-like (protein)
Unique Ligands	GOL, NA

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3CS3 \| pdb_00003cs3	Download File View File

Crystal structure of sugar-binding transcriptional regulator (LacI family) from Enterococcus faecalis

Patskovsky, Y., Romero, R., Freeman, J., Iizuka, M., Groshong, C., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecalis V583
Macromolecule	Sugar-binding transcriptional regulator, LacI family (protein)
Unique Ligands	GOL, SO4

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3DBY \| pdb_00003dby	Download File View File

Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)

Ramagopal, U.A., Bonanno, J.B., Ozyurt, S., Freeman, J., Wasserman, S., Hu, S., Groshong, C., Rodgers, L., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus cereus G9241
Macromolecule	uncharacterized protein (protein)
Unique Ligands	EDO, FE

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2GDQ | pdb_00002gdq

2GGE | pdb_00002gge

2HHL | pdb_00002hhl

2IJQ | pdb_00002ijq

2O34 | pdb_00002o34

2PJU | pdb_00002pju

2PPG | pdb_00002ppg

2Q01 | pdb_00002q01

2QDD | pdb_00002qdd

2QF9 | pdb_00002qf9

2R5X | pdb_00002r5x

2R9G | pdb_00002r9g

2RDM | pdb_00002rdm

3BH1 | pdb_00003bh1

3BJS | pdb_00003bjs

3BQ9 | pdb_00003bq9

3BUT | pdb_00003but

3C3M | pdb_00003c3m

3C6F | pdb_00003c6f

3CFY | pdb_00003cfy

3CG0 | pdb_00003cg0

3CNB | pdb_00003cnb

3CRN | pdb_00003crn

3CS3 | pdb_00003cs3

3DBY | pdb_00003dby