RCSB PDB: Search

1KK7 \| pdb_00001kk7	Download File View File

SCALLOP MYOSIN IN THE NEAR RIGOR CONFORMATION

Himmel, D.M., Gourinath, S., Reshetnikova, L., Shen, Y., Szent-Gyorgyi, A.G., Cohen, C.

(2002) Proc Natl Acad Sci U S A 99: 12645-12650

Released	2002-10-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Argopecten irradians
Macromolecule	MYOSIN ESSENTIAL LIGHT CHAIN, STRIATED ADDUCTOR MUSCLE (protein) MYOSIN HEAVY CHAIN, STRIATED MUSCLE (protein) MYOSIN REGULATORY LIGHT CHAIN, STRIATED ADDUCTOR MUSCLE (protein)
Unique Ligands	CA, MG, SO4

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1KQM \| pdb_00001kqm	Download File View File

SCALLOP MYOSIN S1-AMPPNP IN THE ACTIN-DETACHED CONFORMATION

Himmel, D.M., Gourinath, S., Reshetnikova, L., Shen, Y., Szent-Gyorgyi, G., Cohen, C.

(2002) Proc Natl Acad Sci U S A 99: 12645-12650

Released	2002-11-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Argopecten irradians
Macromolecule	MYOSIN ESSENTIAL LIGHT CHAIN (protein) MYOSIN REGULATORY LIGHT CHAIN (protein) MYOSIN heavy chain (protein)
Unique Ligands	ANP, CA, MG

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1KWO \| pdb_00001kwo	Download File View File

SCALLOP MYOSIN S1-ATPgammaS-p-PDM IN THE ACTIN-DETACHED CONFORMATION

Himmel, D.M., Gourinath, S., Reshetnikova, L., Shen, Y., Szent-Gyorgyi, G., Cohen, C.

(2002) Proc Natl Acad Sci U S A 99: 12645-12650

Released	2002-11-20
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Argopecten irradians
Macromolecule	MYOSIN ESSENTIAL LIGHT CHAIN (protein) MYOSIN HEAVY CHAIN (protein) MYOSIN REGULATORY LIGHT CHAIN (protein)
Unique Ligands	AGS, CA, MG, PDM

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1QVI \| pdb_00001qvi	Download File View File

Crystal structure of scallop myosin S1 in the pre-power stroke state to 2.6 Angstrom resolution: flexibility and function in the head

Gourinath, S., Himmel, D.M., Brown, J.H., Reshetnikova, L., Szent-Gyrgyi, A.G., Cohen, C.

(2003) Structure 11: 1621-1627

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Argopecten irradians
Macromolecule	Myosin essential light chain, striated adductor muscle (protein) Myosin heavy chain, striated muscle (protein) Myosin regulatory light chain, striated adductor muscle (protein)
Unique Ligands	ADP, CA, MG, VO4

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1S5G \| pdb_00001s5g	Download File View File

Structure of Scallop myosin S1 reveals a novel nucleotide conformation

Risal, D., Gourinath, S., Himmel, D.M., Szent-Gyorgyi, A.G., Cohen, C.

(2004) Proc Natl Acad Sci U S A 101: 8930-8935

Released	2004-06-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Argopecten irradians
Macromolecule	Myosin essential light chain, striated adductor muscle (protein) Myosin heavy chain, striated muscle (protein) Myosin regulatory light chain, striated adductor muscle (protein)
Unique Ligands	ADP, CA, MG, SO4

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1SR6 \| pdb_00001sr6	Download File View File

Structure of nucleotide-free scallop myosin S1

Risal, D., Gourinath, S., Himmel, D.M., Szent-Gyorgyi, A.G., Cohen, C.

(2004) Proc Natl Acad Sci U S A 101: 8930-8935

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Argopecten irradians
Macromolecule	Myosin essential light chain, striated adductor muscle (protein) Myosin heavy chain, striated muscle (protein) Myosin regulatory light chain, striated adductor muscle (protein)
Unique Ligands	CA, MG, SO4

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2BE2 \| pdb_00002be2	Download File View File

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with R221239

Himmel, D.M., Das, K., Clark Jr., A.D., Hughes, S.H., Benjahad, A., Oumouch, S., Guillemont, J., Coupa, S., Poncelet, A., Csoka, I., Meyer, C., Andries, K., Nguyen, C.H., Grierson, D.S., Arnold, E.

(2005) J Med Chem 48: 7582-7591

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE P51 SUBUNIT (protein) REVERSE TRANSCRIPTASE P66 SUBUNIT (protein)
Unique Ligands	GOL, MN, R22
Unique branched monosaccharides	FRU, GLC

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2I5J \| pdb_00002i5j	Download File View File

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with DHBNH, an RNASE H inhibitor

Himmel, D.M., Sarafianos, S.G., Knight, J.L., Levy, R.M., Arnold, E.

(2006) ACS Chem Biol 1: 702-712

Released	2006-12-05
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Reverse transcriptase/ribonuclease H P51 subunit (protein) Reverse transcriptase/ribonuclease H P66 subunit (protein)
Unique Ligands	GLC, K05, MG
Unique branched monosaccharides	FRU, GLC

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2OTG \| pdb_00002otg	Download File View File

Rigor-like structures of muscle myosins reveal key mechanical elements in the transduction pathways of this allosteric motor

Yang, Y., Gourinath, S., Kovacs, M., Nyitray, L., Reutzel, R., Himmel, D.M., O'Neall-Hennessey, E., Reshetnikova, L., Szent-Gyorgyi, A.G., Brown, J.H., Cohen, C.

(2007) Structure 15: 553-564

Released	2007-05-29
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Placopecten magellanicus
Macromolecule	Myosin essential light chain (protein) Myosin heavy chain (protein) Myosin regulatory light chain (protein)
Unique Ligands	ADP, CA, MG

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3DLK \| pdb_00003dlk	Download File View File

Crystal Structure of an engineered form of the HIV-1 Reverse Transcriptase, RT69A

Ho, W.C., Bauman, J.D., Himmel, D.M., Das, K., Arnold, E.

(2008) Nucleic Acids Res 36: 5083-5092

Released	2008-10-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) p51 RT (protein)
Unique Ligands	SO4

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3I5F \| pdb_00003i5f	Download File View File

Crystal structure of squid MG.ADP myosin S1

Yang, Y., Gourinath, S., Kovacs, M., Nyitray, L., Reutzel, R., Himmel, D.M., O'Neall-Hennessey, E., Reshetnikova, L., Szent-Gyorgyi, A.G., Brown, J.H., Cohen, C.

(2007) Structure 15: 553-564

Released	2009-08-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Doryteuthis pealeii Todarodes pacificus
Macromolecule	Myosin catalytic light chain LC-1, mantle muscle (protein) Myosin heavy chain isoform A (protein) Myosin regulatory light chain LC-2, mantle muscle (protein)
Unique Ligands	ADP, MG

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3I5G \| pdb_00003i5g	Download File View File

Crystal structure of rigor-like squid myosin S1

Yang, Y., Gourinath, S., Kovacs, M., Nyitray, L., Reutzel, R., Himmel, D.M., O'Neall-Hennessey, E., Reshetnikova, L., Szent-Gyorgyi, A.G., Brown, J.H., Cohen, C.

(2007) Structure 15: 553-564

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Doryteuthis pealeii Todarodes pacificus
Macromolecule	Myosin catalytic light chain LC-1, mantle muscle (protein) Myosin heavy chain isoform A (protein) Myosin regulatory light chain LC-2, mantle muscle (protein)
Unique Ligands	CA, MLI

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3I5H \| pdb_00003i5h	Download File View File

The crystal structure of rigor like squid myosin S1 in the absence of nucleotide

Yang, Y., Gourinath, S., Kovacs, M., Nyitray, L., Reutzel, R., Himmel, D.M., O'Neall-Hennessey, E., Reshetnikova, L., Szent-Gyorgyi, A.G., Brown, J.H., Cohen, C.

(2007) Structure 15: 553-564

Released	2009-07-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Doryteuthis pealeii Todarodes pacificus
Macromolecule	Myosin catalytic light chain LC-1, mantle muscle (protein) Myosin heavy chain isoform A (protein) Myosin regulatory light chain LC-2, mantle muscle (protein)
Unique Ligands	CA

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3I5I \| pdb_00003i5i	Download File View File

The crystal structure of squid myosin S1 in the presence of SO4 2-

Yang, Y., Gourinath, S., Kovacs, M., Nyitray, L., Reutzel, R., Himmel, D.M., O'Neall-Hennessey, E., Reshetnikova, L., Szent-Gyorgyi, A.G., Brown, J.H., Cohen, C.

(2007) Structure 15: 553-564

Released	2009-07-28
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Doryteuthis pealeii Todarodes pacificus
Macromolecule	Myosin catalytic light chain LC-1, mantle muscle (protein) Myosin heavy chain isoform A (protein) Myosin regulatory light chain LC-2, mantle muscle (protein)
Unique Ligands	CA, SO4

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3IG1 \| pdb_00003ig1	Download File View File

HIV-1 Reverse Transcriptase with the Inhibitor beta-Thujaplicinol Bound at the RNase H Active Site

Himmel, D.M., Maegley, K.A., Pauly, T.A., Arnold, E.

(2009) Structure 17: 1625-1635

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	HIV-1 Reverse Transcriptase p51 subunit (protein) HIV-1 Reverse Transcriptase p66 subunit (protein)
Unique Ligands	JTH, MN

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3JTD \| pdb_00003jtd	Download File View File

Calcium-free Scallop Myosin Regulatory Domain with ELC-D19A Point Mutation

Himmel, D.M., Mui, S., O'Neall-Hennessey, E., Szent-Gyorgyi, A., Cohen, C.

(2009) J Mol Biology 394: 496-505

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Argopecten irradians
Macromolecule	Myosin essential light chain, striated adductor muscle (protein) Myosin heavy chain, striated adductor muscle (protein) Myosin regulatory light chain, striated adductor muscle (protein)
Unique Ligands	MG

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3JVT \| pdb_00003jvt	Download File View File

Calcium-bound Scallop Myosin Regulatory Domain (Lever Arm) with Reconstituted Complete Light Chains

Himmel, D.M., Mui, S., O'Neall-Hennessey, E., Szent-Gyorgyi, A., Cohen, C.

(2009) J Mol Biology 394: 496-505

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Argopecten irradians
Macromolecule	Myosin essential light chain, striated adductor muscle (protein) Myosin heavy chain, striated adductor muscle (protein) Myosin regulatory light chain, striated adductor muscle (protein)
Unique Ligands	CA, MG

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3K2P \| pdb_00003k2p	Download File View File

HIV-1 Reverse Transcriptase Isolated RnaseH Domain with the Inhibitor beta-thujaplicinol Bound at the Active Site

Pauly, T.A., Himmel, D.M., Maegley, K., Arnold, E.

(2009) Structure 17: 1625-1635

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse Transcriptase (protein)
Unique Ligands	JTH, MN

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3QLH \| pdb_00003qlh	Download File View File

HIV-1 Reverse Transcriptase in Complex with Manicol at the RNase H Active Site and TMC278 (Rilpivirine) at the NNRTI Binding Pocket

Himmel, D.M., Wojtak, K., Bauman, J.D., Arnold, E.

(2011) J Med Chem 54: 4462-4473

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	reverse transcriptase/ribonuclease H (protein)
Unique Ligands	DMS, EDO, MN, MNK, T27

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4QAG \| pdb_00004qag	Download File View File

Structure of a dihydroxycoumarin active-site inhibitor in complex with the RNASE H domain of HIV-1 reverse transcriptase

Himmel, D.M., Ho, W.C., Arnold, E.

(2014) J Mol Biology 426: 2617-2631

Released	2014-06-04
Method	X-RAY DIFFRACTION 1.712 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein)
Unique Ligands	F95, MN

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4WR2 \| pdb_00004wr2	Download File View File

Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (RihA) Protein from Shewanella loihica PV-4 (SHEW_0697, Target PSI-029635) with divalent cation and PEG 400 bound at the active site

Himmel, D.M., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Love, J., Fiser, A., Seidel, R.D., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Shewanella loihica PV-4
Macromolecule	Pyrimidine-specific ribonucleoside hydrolase RihA (protein)
Unique Ligands	1PE, CA

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5DK6 \| pdb_00005dk6	Download File View File

CRYSTAL STRUCTURE OF A 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE (MTA/SAH) NUCLEOSIDASE (MTAN) FROM COLWELLIA PSYCHRERYTHRAEA 34H (CPS_4743, TARGET PSI-029300) IN COMPLEX WITH ADENINE AT 2.27 A RESOLUTION

Himmel, D.M., Bhosle, R., Toro, R., Ahmed, M., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Love, J., Fiser, A., Seidel, R.D., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Colwellia psychrerythraea 34H
Macromolecule	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (protein)
Unique Ligands	ADE, GLY

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5HFK \| pdb_00005hfk	Download File View File

CRYSTAL STRUCTURE OF A GLUTATHIONE S-TRANSFERASE PROTEIN FROM ESCHERICHIA COLI OCh 157:H7 STR. SAKAI (ECs3186, TARGET EFI-507414) WITH BOUND GLUTATHIONE

Himmel, D.M., Toro, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI), New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.551 Å
Organisms	Escherichia coli K-12
Macromolecule	Disulfide-bond oxidoreductase YfcG (protein)
Unique Ligands	GSH

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KK7 | pdb_00001kk7

1KQM | pdb_00001kqm

1KWO | pdb_00001kwo

1QVI | pdb_00001qvi

1S5G | pdb_00001s5g

1SR6 | pdb_00001sr6

2BE2 | pdb_00002be2

2I5J | pdb_00002i5j

2OTG | pdb_00002otg

3DLK | pdb_00003dlk

3I5F | pdb_00003i5f

3I5G | pdb_00003i5g

3I5H | pdb_00003i5h

3I5I | pdb_00003i5i

3IG1 | pdb_00003ig1

3JTD | pdb_00003jtd

3JVT | pdb_00003jvt

3K2P | pdb_00003k2p

3QLH | pdb_00003qlh

4QAG | pdb_00004qag

4WR2 | pdb_00004wr2

5DK6 | pdb_00005dk6

5HFK | pdb_00005hfk