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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hong, M."

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (12)
	Bacillus spizizenii str. W23 (5)
	synthetic construct (5)
	Bacillus cereus ATCC 14579 (3)
	Listeria monocytogenes (3)
	Bacillus subtilis (2)
	Escherichia coli (2)
	Gallus gallus (2)
	Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd) (2)
	Influenza B virus (B/Maryland/1/2001) (2)

More...

Taxonomy

	Bacteria (21)
	Eukaryota (17)
	Riboviria (6)
	other sequences (5)
	Riboviria (RNA viruses and viroids) (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (27)
	SOLID-STATE NMR (16)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (48)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (15)
	2.5 - 3.0 (12)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (8)
	2015 - 2019 (17)
	2020 - 2024 (17)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

	MemProtMD (7)
	OPM (6)
	PDBTM (5)
	mpstruc (3)

Symmetry Type

	Cyclic (30)
	Asymmetric (13)
	Dihedral (4)
	Helical (2)

SCOP Classification

	All alpha proteins (12)
	Artifacts (5)
	All beta proteins (2)
	Coiled coil proteins (1)
	Small proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 48 Structures

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1Z91 \| pdb_00001z91	Download File View File

x-ray crystal structure of apo-OhrRC15S in reduced form: MarR family protein

Hong, M., Fuangthong, M., Helmann, J.D., Brennan, R.G.

(2005) Mol Cell 20: 131-141

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	Organic hydroperoxide resistance transcriptional regulator (protein)

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1Z9C \| pdb_00001z9c	Download File View File

Crystal structure of OhrR bound to the ohrA promoter: Structure of MarR family protein with operator DNA

Hong, M., Fuangthong, M., Helmann, J.D., Brennan, R.G.

(2005) Mol Cell 20: 131-141

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Bacillus subtilis
Macromolecule	Organic hydroperoxide resistance transcriptional regulator (protein) DNA (29-MER) (nucleic acid)

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1ZY6 \| pdb_00001zy6	Download File View File

Membrane-bound dimer structure of Protegrin-1 (PG-1), a beta-Hairpin Antimicrobial Peptide in Lipid Bilayers from Rotational-Echo Double-Resonance Solid-State NMR

Wu, X., Mani, R., Tang, M., Buffy, J.J., Waring, A.J., Sherman, M.A., Hong, M.

(2006) Biochemistry 45: 8341-8349

Released	2006-06-13
Method	SOLID-STATE NMR
Organisms	Sus scrofa
Macromolecule	Protegrin 1 (protein)

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2HVC \| pdb_00002hvc	Download File View File

The Crystal Structure of Ligand-binding Domain (LBD) of human Androgen Receptor in Complex with a selective modulator LGD2226

Wang, F., Liu, X.-Q., Li, H., Liang, K.-N., Miner, J.N., Hong, M., Kallel, E.A., van Oeveren, A., Zhi, L., Jiang, T.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1067-1071

Released	2007-07-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Androgen receptor (protein)
Unique Ligands	LGD

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2KAD \| pdb_00002kad	Download File View File

Magic-Angle-Spinning Solid-State NMR Structure of Influenza A M2 Transmembrane Domain

Hong, M., Cady, S.D., Mishanina, T.V.

(2009) J Mol Biology 385: 1127-1141

Released	2008-11-18
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
Macromolecule	Transmembrane peptide of Matrix protein 2 (protein)
Unique Ligands	308

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2KHT \| pdb_00002kht	Download File View File

NMR Structure of human alpha defensin HNP-1

Zhang, Y., Li, S., Doherty, T.F., Lubkowski, J., Lu, W., Li, J., Barinka, C., Hong, M.

(2010) J Mol Biology 397: 408-422

Released	2010-02-09
Method	SOLID-STATE NMR
Organisms	Homo sapiens
Macromolecule	Neutrophil defensin 1 (protein)

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2KQT \| pdb_00002kqt	Download File View File

Solid-state NMR structure of the M2 transmembrane peptide of the influenza A virus in DMPC lipid bilayers bound to deuterated amantadine

Cady, S.D., Schmidt-Rohr, K., Wang, J., Soto, C.S., DeGrado, W.F., Hong, M.

(2010) Nature 463: 689-692

Released	2010-02-09
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
Macromolecule	M2 protein (protein)
Unique Ligands	308

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2MUZ \| pdb_00002muz	Download File View File

ssNMR structure of a designed rocker protein

Wang, T., Joh, N., Wu, Y., DeGrado, W.F., Hong, M.

(2014) Science 346: 1520-1524

Released	2014-12-24
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	designed rocker protein (protein)

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3COQ \| pdb_00003coq	Download File View File

Structural Basis for Dimerization in DNA Recognition by Gal4

Hong, M., Fitzgerald, M.X., Harper, S., Luo, C., Speicher, D.W.

(2008) Structure 16: 1019-1026

Released	2008-07-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Regulatory protein GAL4 (protein) DNA (5'-D(DAPDCPDCPDGPDGPDAPDGPDGPDAPDCPDAPDGPDTPDCPDCPDTPDCPDCPDGPDG)-3') (nucleic acid) DNA (5'-D(DTPDCPDCPDGPDGPDAPDGPDGPDAPDCPDTPDGPDTPDCPDCPDTPDCPDCPDGPDG)-3') (nucleic acid)
Unique Ligands	MPD, ZN

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3MTX \| pdb_00003mtx	Download File View File

Crystal structure of chicken MD-1

Yoon, S.I., Hong, M., Han, G.W., Wilson, I.A.

(2010) Proc Natl Acad Sci U S A 107: 10990-10995

Released	2010-06-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Protein MD-1 (protein)
Unique Ligands	GOL, PGE, PGT

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3MU3 \| pdb_00003mu3	Download File View File

Crystal structure of chicken MD-1 complexed with lipid IVa

Yoon, S.I., Hong, M., Han, G.W., Wilson, I.A.

(2010) Proc Natl Acad Sci U S A 107: 10990-10995

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Gallus gallus
Macromolecule	Protein MD-1 (protein)
Unique Ligands	GOL, LP4, LP5

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3RG1 \| pdb_00003rg1	Download File View File

Crystal structure of the RP105/MD-1 complex

Yoon, S.I., Hong, M., Wilson, I.A.

(2011) Nat Struct Mol Biol 18: 1028-1035

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Bos taurus
Macromolecule	CD180 molecule (protein) LY86 protein (protein)
Unique Ligands	PGT
Unique branched monosaccharides	BMA, MAN, NAG

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3UN9 \| pdb_00003un9	Download File View File

Crystal structure of an immune receptor

Hong, M., Yoon, S.I., Wilson, I.A.

(2012) Immunity 36: 337-347

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	NLR family member X1 (protein)
Unique Ligands	PT

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4M5Z \| pdb_00004m5z	Download File View File

Crystal structure of broadly neutralizing antibody 5J8 bound to 2009 pandemic influenza hemagglutinin, HA1 subunit

Hong, M., Lee, P.S., Wilson, I.A.

(2013) J Virol 87: 12471-12480

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Fab 5J8 heavy chain (protein) Fab 5J8 light chain (protein) Hemagglutinin HA1 chain (protein)

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4XRF \| pdb_00004xrf	Download File View File

Crystal structure of MepR like protein complexed with pseudoligands

Hong, M., Kim, M.I., Cho, M.U.

To be published

Released	2016-02-10
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Transcriptional regulator, MarR family (protein)
Unique Ligands	DAO, GOL, ISQ, NI, PO4, SO4

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5B6A \| pdb_00005b6a	Download File View File

Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa

Kim, M.I., Hong, M.

(2016) Biochem Biophys Res Commun 478: 300-306

Released	2016-08-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Pyridoxal kinase PdxY (protein)
Unique Ligands	MG, PO4, TRS

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5H20 \| pdb_00005h20	Download File View File

X-ray structure of PadR-like Transcription factor from bacteroid fragilis

Lee, C., Hong, M.

(2017) Biochem Biophys Res Commun 483: 264-270

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacteroides fragilis NCTC 9343
Macromolecule	Putative PadR-family transcriptional regulatory protein (protein)
Unique Ligands	GLC, IPA, PO4

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5IE9 \| pdb_00005ie9	Download File View File

Crystal structure of the Bacillus-conserved MazG protein, a nucleotide pyrophosphohydrolase

Kim, M., Hong, M.

(2016) Biochem Biophys Res Commun 472: 237-242

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus cereus
Macromolecule	Nucleotide pyrophosphohydrolase (protein)
Unique Ligands	MN

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5UGK \| pdb_00005ugk	Download File View File

Zinc-Binding Structure of a Catalytic Amyloid from Solid-State NMR Spectroscopy

Lee, M., Wang, T., Makhlynets, O.V., Wu, Y., Polizzi, N., Wu, H., Gosavi, P.M., Korendovych, I.V., DeGrado, W.F., Hong, M.

(2017) Proc Natl Acad Sci U S A 114: 6191-6196

Released	2017-05-31
Method	SOLID-STATE NMR
Organisms	synthetic construct
Macromolecule	ILE-HIS-VAL-HIS-LEU-GLN-ILE (protein)
Unique Ligands	ZN

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5X11 \| pdb_00005x11	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with operator DNA

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bacillus spizizenii str. W23 synthetic construct
Macromolecule	Transcriptional regulator (protein) DNA (28-MER) (nucleic acid)

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5X12 \| pdb_00005x12	Download File View File

Crystal structure of Bacillus subtilis PadR

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)

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5X13 \| pdb_00005x13	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with p-coumaric acid

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	GOL, HC4

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5X14 \| pdb_00005x14	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with ferulic acid

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	FER, GOL