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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hopfner, K.P."

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	Homo sapiens (16)
	Pyrococcus furiosus (7)
	synthetic construct (7)
	Saccharomyces cerevisiae S288C (6)
	Thermochaetoides thermophila (6)
	Escherichia coli (5)
	Thermochaetoides thermophila DSM 1495 (5)
	Archaeoglobus fulgidus (4)
	Mus musculus (4)
	Thermotoga maritima (4)

More...

Taxonomy

	Eukaryota (41)
	Archaea (16)
	Bacteria (9)
	other sequences (7)
	unclassified sequences (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (45)
	ELECTRON MICROSCOPY (21)

Polymer Entity Type

	Protein (66)
	DNA (12)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (14)
	2.5 - 3.0 (18)
	3.0 - 3.5 (16)
	3.5 - 4.0 (4)
	4.0 - 4.5 (5)
	> 4.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (16)
	2010 - 2014 (17)
	2015 - 2019 (11)
	2020 - 2024 (14)

Enzyme Classification Name

	Hydrolases (26)
	Transferases (14)

Symmetry Type

	Asymmetric (51)
	Cyclic (19)
	Dihedral (4)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (10)
	All alpha proteins (4)
	Artifacts (2)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (2)

AllSelected

1 to 25 of 66 Structures

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1F2T \| pdb_00001f2t	Download File View File

Crystal Structure of ATP-Free RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)

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1F2U \| pdb_00001f2u	Download File View File

Crystal Structure of RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)
Unique Ligands	ATP, MG

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1FXY \| pdb_00001fxy	Download File View File

COAGULATION FACTOR XA-TRYPSIN CHIMERA INHIBITED WITH D-PHE-PRO-ARG-CHLOROMETHYLKETONE

Hopfner, K.P., Kopetzki, E., Kresse, G.-B., Huber, R., Bode, W., Engh, R.A.

(1998) Proc Natl Acad Sci U S A 95: 9813-9818

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR XA-TRYPSIN CHIMERA (protein)
Unique Ligands	0G6

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1KLI \| pdb_00001kli	Download File View File

Cofactor-and substrate-assisted activation of factor VIIa

Sichler, K., Banner, D.W., D'Arcy, A., Hopfner, K.P., Huber, R., Bode, W., Kresse, G.B., Kopetzki, E., Brandstetter, H.

(2002) J Mol Biology 322: 591-603

Released	2002-09-18
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	factor VIIa (protein)
Unique Ligands	BEN, CA, GOL, SO4

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1KLJ \| pdb_00001klj	Download File View File

Crystal structure of uninhibited factor VIIa

Sichler, K., Banner, D., D'Arcy, A., Hopfner, K.P., Huber, R., Bode, W., Kresse, G.B., Kopetzki, E., Brandstetter, H.

(2002) J Mol Biology 322: 591-603

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Homo sapiens
Macromolecule	factor VIIa (protein)
Unique Ligands	CA, EDO

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1L8D \| pdb_00001l8d	Download File View File

Rad50 coiled-coil Zn hook

Hopfner, K.P., Tainer, J.A.

(2002) Nature 418: 562-566

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	CIT, HG, PO4

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1S8E \| pdb_00001s8e	Download File View File

Crystal structure of Mre11-3

Hopfner, K.P.

(2004) Nucleic Acids Res 32: 1886-1893

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	exonuclease putative (protein)
Unique Ligands	MN

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1US8 \| pdb_00001us8	Download File View File

The Rad50 signature motif: essential to ATP binding and biological function

Moncalian, G., Lengsfeld, B., Bhaskara, V., Hopfner, K.P., Karcher, A., Alden, E., Tainer, J.A., Paull, T.T.

(2004) J Mol Biology 335: 937

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE (protein)

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1YQT \| pdb_00001yqt	Download File View File

RNase-L Inhibitor

Karcher, A., Buttner, K., Martens, B., Jansen, R.P., Hopfner, K.P.

(2005) Structure 13: 649-659

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	RNase l inhibitor (protein)
Unique Ligands	ADP, MG

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1Z5Z \| pdb_00001z5z	Download File View File

Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain

Duerr, H., Koerner, C., Mueller, M., Hickmann, V., Hopfner, K.P.

(2005) Cell 121: 363-373

Released	2005-05-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	Helicase of the snf2/rad54 family (protein)

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1Z63 \| pdb_00001z63	Download File View File

Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA

Duerr, H., Koerner, C., Mueller, M., Hickmann, V., Hopfner, K.P.

(2005) Cell 121: 363-373

Released	2005-05-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Helicase of the snf2/rad54 family (protein) 5'-D(APAPAPAPAPAAPTPTPGPCPCPGPAPAPGPAPCPGPAPAPAPAPAPA)-3' (nucleic acid) 5'-D(TPTPTPTPTPTPTPCPGPTPCPTPTPCPGPGPCPAPAPTPTPTPTPTPT)-3' (nucleic acid)

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1Z6A \| pdb_00001z6a	Download File View File

Sulfolobus solfataricus SWI2/SNF2 ATPase core domain

Duerr, H., Koerner, C., Mueller, M., Hickmann, V., Hopfner, K.P.

(2005) Cell 121: 363-373

Released	2005-05-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	Helicase of the snf2/rad54 family (protein)
Unique Ligands	HG, PO4

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2BA0 \| pdb_00002ba0	Download File View File

Archaeal exosome core

Buttner, K., Wenig, K., Hopfner, K.P.

(2005) Mol Cell 20: 461-471

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Archaeal exosome RNA binding protein RRP4 (protein) Archaeal exosome RNA binding protein RRP41 (protein) Archaeal exosome RNA binding protein RRP42 (protein)

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2BA1 \| pdb_00002ba1	Download File View File

Archaeal exosome core

Hopfner, K.P., Buttner, K., Wenig, K.

(2005) Mol Cell 20: 461-471

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Archaeal exosome RNA binding protein CSL4 (protein) Archaeal exosome complex exonuclease RRP41 (protein) Archaeal exosome complex exonuclease RRP42 (protein)
Unique Ligands	ZN

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2P6R \| pdb_00002p6r	Download File View File

Crystal structure of superfamily 2 helicase Hel308 in complex with unwound DNA

Buettner, K., Nehring, S., Hopfner, K.P.

(2007) Nat Struct Mol Biol 14: 647-652

Released	2007-06-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	afUHEL308 HELICASE (protein) 25-MER (nucleic acid) 5'-D(CPTPAPGPAPGPAPCPTPAPTPCPGPAP*T)-3' (nucleic acid)

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2P6U \| pdb_00002p6u	Download File View File

Apo structure of the Hel308 superfamily 2 helicase

Buettner, K., Nehring, S., Hopfner, K.P.

(2007) Nat Struct Mol Biol 14: 647-652

Released	2007-06-12
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	afuHEL308 HELICASE (protein)
Unique Ligands	PO4

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2QFB \| pdb_00002qfb	Download File View File

Crystal structure of the regulatory domain of human RIG-I with bound Zn

Cui, S., Lammens, A., Lammens, K., Hopfner, K.P.

(2008) Mol Cell 29: 169-179

Released	2008-02-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein)
Unique Ligands	ZN

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2QFD \| pdb_00002qfd	Download File View File

Crystal structure of the regulatory domain of human RIG-I with bound Hg

Cui, S., Lammens, A., Lammens, K., Hopfner, K.P.

(2008) Mol Cell 29: 169-179

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein)
Unique Ligands	HG

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2W4R \| pdb_00002w4r	Download File View File

Crystal structure of the regulatory domain of human LGP2

Pippig, D.A., Hellmuth, J.C., Cui, S., Kirchhofer, A., Lammens, K., Lammens, A., Schmidt, A., Rothenfusser, S., Hopfner, K.P.

(2009) Nucleic Acids Res 37: 2014

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	PROBABLE ATP-DEPENDENT RNA HELICASE DHX58 (protein)
Unique Ligands	HG, SO4

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2XGP \| pdb_00002xgp	Download File View File

Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA

Scheider, S., Lammens, K., Schorr, S., Hopfner, K.P., Carell, T.

(2010) Proc Natl Acad Sci U S A 107: 20720

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA POLYMERASE ETA (protein) 5'-D(CP8FGCPTPCPAPTPCPCPAPC)-3' (nucleic acid) 5'-D(GPTPGPGPAPTPGPAPG)-3' (nucleic acid)
Unique Ligands	CA

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3BK7 \| pdb_00003bk7	Download File View File

Structure of the complete ABCE1/RNAase-L Inhibitor protein from Pyrococcus abysii

Karcher, A., Hopfner, K.P.

(2008) J Biological Chem 283: 7962-7971

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus abyssi
Macromolecule	ABC transporter ATP-binding protein (protein)
Unique Ligands	ADP, MG, SF4

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3C1Y \| pdb_00003c1y	Download File View File

Structure of bacterial DNA damage sensor protein with co-purified and co-crystallized ligand

Witte, G., Hartung, S., Buttner, K., Hopfner, K.P.

(2008) Mol Cell 30: 167-178

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	DNA integrity scanning protein disA (protein)
Unique Ligands	2BA

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3C1Z \| pdb_00003c1z	Download File View File

Structure of the ligand-free form of a bacterial DNA damage sensor protein

Witte, G., Hartung, S., Buttner, K., Hopfner, K.P.

(2008) Mol Cell 30: 167-178

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	DNA integrity scanning protein disA (protein)

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3C21 \| pdb_00003c21	Download File View File

Structure of a bacterial DNA damage sensor protein with reaction product

Witte, G., Hartung, S., Buttner, K., Hopfner, K.P.

(2008) Mol Cell 30: 167-178

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga maritima
Macromolecule	DNA integrity scanning protein disA (protein)
Unique Ligands	2BA

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3C23 \| pdb_00003c23	Download File View File

Structure of a bacterial DNA damage sensor protein with non-reactive Ligand

Witte, G., Hartung, S., Buttner, K., Hopfner, K.P.

(2008) Mol Cell 30: 167-178

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	DNA integrity scanning protein disA (protein)
Unique Ligands	3AT

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1F2T | pdb_00001f2t

1F2U | pdb_00001f2u

1FXY | pdb_00001fxy

1KLI | pdb_00001kli

1KLJ | pdb_00001klj

1L8D | pdb_00001l8d

1S8E | pdb_00001s8e

1US8 | pdb_00001us8

1YQT | pdb_00001yqt

1Z5Z | pdb_00001z5z

1Z63 | pdb_00001z63

1Z6A | pdb_00001z6a

2BA0 | pdb_00002ba0

2BA1 | pdb_00002ba1

2P6R | pdb_00002p6r

2P6U | pdb_00002p6u

2QFB | pdb_00002qfb

2QFD | pdb_00002qfd

2W4R | pdb_00002w4r

2XGP | pdb_00002xgp

3BK7 | pdb_00003bk7

3C1Y | pdb_00003c1y

3C1Z | pdb_00003c1z

3C21 | pdb_00003c21

3C23 | pdb_00003c23