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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Imada, K."

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Search Summary

This query matches 98 Structures.

Refinements

Structure Determination Methodology

experimental (98)

Scientific Name of Source Organism

	Salmonella enterica subsp. enterica serovar Typhimurium (19)
	Vibrio alginolyticus (16)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (12)
	Vibrio cholerae (9)
	Trichoderma viride (8)
	Porphyromonas gingivalis ATCC 33277 (4)
	Bacillus subtilis (3)
	Aequorea victoria (2)
	Aquifex aeolicus VF5 (2)
	Aspergillus fumigatus Af293 (2)

More...

Taxonomy

	Bacteria (83)
	Eukaryota (14)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (81)
	ELECTRON MICROSCOPY (17)

Polymer Entity Type

Protein (98)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (26)
	2.0 - 2.5 (34)
	2.5 - 3.0 (11)
	3.0 - 3.5 (15)
	3.5 - 4.0 (5)
	> 4.5 (4)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (13)
	2010 - 2014 (13)
	2015 - 2019 (28)
	2020 - 2024 (29)
	2025 - 2029 (11)

Enzyme Classification Name

	Oxidoreductases (10)
	Hydrolases (2)
	Translocases (2)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (5)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (50)
	Dihedral (4)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Artifacts (9)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (4)
	All beta proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 98 Structures

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1A05 \| pdb_00001a05	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE

Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.

(1998) Structure 6: 971-982

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acidithiobacillus ferrooxidans
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE (protein)
Unique Ligands	IPM, MG

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1IO1 \| pdb_00001io1	Download File View File

CRYSTAL STRUCTURE OF F41 FRAGMENT OF FLAGELLIN

Samatey, F.A., Imada, K., Nagashima, S., Vondervisz, F., Kumasaka, T., Yamamoto, M., Namba, K.

(2001) Nature 410: 331-337

Released	2001-04-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PHASE 1 FLAGELLIN (protein)

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1IPD \| pdb_00001ipd	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A HIGHLY THERMOSTABLE ENZYME, 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS THERMOPHILUS AT 2.2 ANGSTROMS RESOLUTION

Imada, K., Sato, M., Tanaka, N., Katsube, Y., Matsuura, Y., Oshima, T.

(1991) J Mol Biology 222: 725-738

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE (protein)
Unique Ligands	SO4

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1VGL \| pdb_00001vgl	Download File View File

Crystal structure of tetrameric KaiB from T.elongatus BP-1

Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Namba, K., Ishiura, M.

(2005) J Biological Chem 280: 43141-43149

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Circadian clock protein kaiB (protein)
Unique Ligands	HG

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1WLG \| pdb_00001wlg	Download File View File

Crystal structure of FlgE31, a major fragment of the hook protein

Samatey, F.A., Matsunami, H., Imada, K., Nagashima, S., Shaikh, T.R., Thomas, D.R., DeRosier, D.J., Kitao, A., Namba, K.

(2004) Nature 431: 1062-1068

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar hook protein flgE (protein)

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2BGY \| pdb_00002bgy	Download File View File

Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.

Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., DeRosier, D.J.

(2005) Proc Natl Acad Sci U S A 102: 1023

Released	2005-01-27
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	FLAGELLAR HOOK PROTEIN FLGE (protein)

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2BGZ \| pdb_00002bgz	Download File View File

ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.

Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., Derosier, D.J.

(2005) Proc Natl Acad Sci U S A 102: 1023

Released	2005-01-27
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	FLAGELLAR HOOK PROTEIN FLGE (protein)

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2D4U \| pdb_00002d4u	Download File View File

Crystal Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr

Imada, K., Tajima, H., Namba, K., Sakuma, M., Homma, M., Kawagishi, I.

(2011) J Biological Chem

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Methyl-accepting chemotaxis protein I (protein)

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2D4V \| pdb_00002d4v	Download File View File

Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans

Imada, K., Tamura, T., Namba, K., Inagaki, K.

(2008) Proteins 70: 63-71

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acidithiobacillus thiooxidans
Macromolecule	isocitrate dehydrogenase (protein)
Unique Ligands	FLC, NAD

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2D4W \| pdb_00002d4w	Download File View File

Crystal structure of glycerol kinase from Cellulomonas sp. NT3060

Imada, K., Tamura, T., Namba, K., Inagaki, K.

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cellulomonas sp.
Macromolecule	glycerol kinase (protein)
Unique Ligands	MPD

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2D4X \| pdb_00002d4x	Download File View File

Crystal structure of a 26K fragment of HAP3 (FlgL)

Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar hook-associated protein 3 (protein)

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2D4Y \| pdb_00002d4y	Download File View File

Crystal structure of a 49K fragment of HAP1 (FlgK)

Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar hook-associated protein 1 (protein)

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2DPY \| pdb_00002dpy	Download File View File

Crystal structure of the flagellar type III ATPase FliI

Imada, K., Namba, K., Minamino, T.

(2007) Proc Natl Acad Sci U S A 104: 485-490

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellum-specific ATP synthase (protein)
Unique Ligands	ADP

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2ZF8 \| pdb_00002zf8	Download File View File

Crystal structure of MotY

Imada, K., Kojima, S., Namba, K., Homma, M.

(2008) Proc Natl Acad Sci U S A 105: 7696-7701

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Vibrio alginolyticus
Macromolecule	Component of sodium-driven polar flagellar motor (protein)

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2ZOV \| pdb_00002zov	Download File View File

Structure of the periplasmic domain of MotB from Salmonella (crystal form I)

Imada, K., Kojima, S., Namba, K., Homma, M.

(2009) Mol Microbiol 73: 710-718

Released	2009-06-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Chemotaxis protein motB (protein)

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2ZVY \| pdb_00002zvy	Download File View File

Structure of the periplasmic domain of MotB from Salmonella (crystal form II)

Kojima, S., Homma, M., Namba, K., Imada, K.

(2009) Mol Microbiol 73: 710-718

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Chemotaxis protein motB (protein)

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2ZVZ \| pdb_00002zvz	Download File View File

Structure of the periplasmic domain of MotB from Salmonella (crystal form III)

Imada, K., Kojima, S., Namba, K., Homma, S.

(2009) Mol Microbiol 73: 710-718

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Chemotaxis protein motB (protein)

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3A5I \| pdb_00003a5i	Download File View File

Structure of the cytoplasmic domain of FlhA

Imada, K., Saijo-Hamano, Y., Shimada, M., Namba, K.

(2010) Mol Microbiol 76: 260-268

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar biosynthesis protein flhA (protein)

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3A7M \| pdb_00003a7m	Download File View File

Structure of FliT, the flagellar type III chaperone for FliD

Imada, K., Minamino, T., Kinoshita, M., Namba, K.

(2010) Proc Natl Acad Sci U S A 107: 8812-8817

Released	2010-04-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar protein fliT (protein)

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3ADY \| pdb_00003ady	Download File View File

Crystal structure of DotD from Legionella

Imada, K., Nakano, N., Kubori, T., Kinoshita, M., Nagai, H.

(2010) PLoS Pathog 6: e1001129-e1001129

Released	2010-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	DotD (protein)

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3AJC \| pdb_00003ajc	Download File View File

Structure of the MC domain of FliG (PEV), a CW-biased mutant

Imada, K., Minamino, T., Kinoshita, M., Namba, K.

(2011) PLoS Biol 9: e1000616-e1000616

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	Flagellar motor switch protein fliG (protein)

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3AJW \| pdb_00003ajw	Download File View File

Structure of FliJ, a soluble component of flagellar type III export apparatus

Imada, K., Ibuki, T., Minamino, T., Namba, K.

(2011) Nat Struct Mol Biol 18: 277-282

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar fliJ protein (protein)
Unique Ligands	HG

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3ATP \| pdb_00003atp	Download File View File

Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr with ligand

Tajima, H., Sakuma, M., Homma, K., Kawagishi, I., Imada, K.

(2011) J Biological Chem 286: 42200-42210

Released	2011-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	Methyl-accepting chemotaxis protein I (protein)
Unique Ligands	SER