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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jin, W."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (6)
	Serratia marcescens (4)
	Rattus norvegicus (2)
	Leiurus hebraeus (1)

Taxonomy

	Eukaryota (9)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (13)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (8)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Multi-domain proteins (alpha and beta) (3)
	Small proteins (1)

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1 to 13 of 13 Structures

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1LIR \| pdb_00001lir	Download File View File

LQ2 FROM LEIURUS QUINQUESTRIATUS, NMR, 22 STRUCTURES

Renisio, J.G., Lu, Z., Blanc, E., Jin, W., Lewis, J.H., Bornet, O., Darbon, H.

(1999) Proteins 34: 417-426

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Leiurus hebraeus
Macromolecule	LQ2 (protein)

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2DOO \| pdb_00002doo	Download File View File

The structure of IMP-1 complexed with the detecting reagent (DansylC4SH) by a fluorescent probe

Kurosaki, H., Yamaguchi, Y., Yasuzawa, H., Jin, W., Yamagata, Y., Arakawa, Y.

(2006) ChemMedChem 1: 969-972

Released	2006-11-28
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Serratia marcescens
Macromolecule	BETA-LACTAMASE IMP-1 (protein)
Unique Ligands	C4H, ZN

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4QYY \| pdb_00004qyy	Download File View File

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

Deng, Y., Shipps, G.W., Cooper, A., English, J.M., Annis, D.A., Carr, D., Nan, Y., Wang, T., Zhu, Y.H., Chuang, C., Dayananth, P., Hruza, A.W., Xiao, L., Jin, W., Kirschmeier, P., Windsor, W.T., Samatar, A.A.

(2014) J Med Chem 57: 8817-8826

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	3G7, SO4

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5GS8 \| pdb_00005gs8	Download File View File

Crystal structure of TLA-3 extended-spectrum beta-lactamase

Wachino, J., Jin, W., Arakawa, Y.

(2017) Antimicrob Agents Chemother 61:

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Serratia marcescens
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, NA, SO4

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5GWA \| pdb_00005gwa	Download File View File

Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with avibactam

Wachino, J., Jin, W., Arakawa, Y.

(2017) Antimicrob Agents Chemother 61:

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Serratia marcescens
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, GOL, NA, NXL, SO4

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5H1J \| pdb_00005h1j	Download File View File

Crystal structure of WD40 repeat domains of Gemin5

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)

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5H1K \| pdb_00005h1k	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment

Wang, Y., Jin, W., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(GPCPAPAPUPUPUPUPUPGPAPCP*A)-3') (nucleic acid)

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5H1L \| pdb_00005h1l	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(APUPUPUPUPUP*G)-3') (nucleic acid)
Unique Ligands	GOL

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5H1M \| pdb_00005h1m	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.492 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	M7G

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5X5G \| pdb_00005x5g	Download File View File

Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with OP0595

Wachino, J., Jin, W., Arakawa, Y.

(2017) Antimicrob Agents Chemother 61:

Released	2017-07-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Serratia marcescens
Macromolecule	Beta-lactamase (protein)
Unique Ligands	NA, OP0, SO4

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

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6LXD \| pdb_00006lxd	Download File View File

Pri-miRNA bound DROSHA-DGCR8 complex

Jin, W., Wang, J., Liu, C.P., Wang, H.W., Xu, R.M.

(2020) Mol Cell 78: 423

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Microprocessor complex subunit DGCR8 (protein) Ribonuclease 3 (protein) RNA (102-mer) (nucleic acid)
Unique Ligands	ZN

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6LXE \| pdb_00006lxe	Download File View File

DROSHA-DGCR8 complex

Jin, W., Wang, J., Liu, C.P., Wang, H.W., Xu, R.M.

(2020) Mol Cell 78: 423

Released	2020-04-15
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Microprocessor complex subunit DGCR8 (protein) Ribonuclease 3 (protein)
Unique Ligands	ZN

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1LIR | pdb_00001lir

LQ2 FROM LEIURUS QUINQUESTRIATUS, NMR, 22 STRUCTURES

2DOO | pdb_00002doo

The structure of IMP-1 complexed with the detecting reagent (DansylC4SH) by a fluorescent probe

4QYY | pdb_00004qyy

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

5GS8 | pdb_00005gs8

Crystal structure of TLA-3 extended-spectrum beta-lactamase

5GWA | pdb_00005gwa

Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with avibactam

5H1J | pdb_00005h1j

Crystal structure of WD40 repeat domains of Gemin5

5H1K | pdb_00005h1k

Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment

5H1L | pdb_00005h1l

Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment

5H1M | pdb_00005h1m

Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G

5X5G | pdb_00005x5g

Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with OP0595

6DCG | pdb_00006dcg

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

6LXD | pdb_00006lxd

Pri-miRNA bound DROSHA-DGCR8 complex

6LXE | pdb_00006lxe

DROSHA-DGCR8 complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1LIR | pdb_00001lir

2DOO | pdb_00002doo

4QYY | pdb_00004qyy

5GS8 | pdb_00005gs8

5GWA | pdb_00005gwa

5H1J | pdb_00005h1j

5H1K | pdb_00005h1k

5H1L | pdb_00005h1l

5H1M | pdb_00005h1m

5X5G | pdb_00005x5g

6DCG | pdb_00006dcg

6LXD | pdb_00006lxd

6LXE | pdb_00006lxe