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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Joachimiak, A."

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Search Summary

This query matches 2,884 Structures.

Refinements

Structure Determination Methodology

experimental (2,884)

Scientific Name of Source Organism

	Pseudomonas aeruginosa PAO1 (76)
	Homo sapiens (72)
	Severe acute respiratory syndrome coronavirus 2 (69)
	Vibrio cholerae O1 biovar El Tor str. N16961 (66)
	Bacillus subtilis (63)
	Agrobacterium fabrum str. C58 (60)
	Yersinia pestis CO92 (56)
	Escherichia coli (55)
	Enterococcus faecalis V583 (45)
	Bacillus anthracis str. Ames (41)

More...

Taxonomy

	Bacteria (2,507)
	Eukaryota (163)
	Archaea (126)
	Riboviria (70)
	unclassified sequences (9)
	other sequences (6)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (4)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (2,877)
	SOLUTION NMR (7)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (2,871)
	DNA (20)
	RNA (8)
	NA-hybrid (3)

Refinement Resolution (Å)

	0.5 - 1.0 (14)
	1.0 - 1.5 (282)
	1.5 - 2.0 (1,162)
	2.0 - 2.5 (1,031)
	2.5 - 3.0 (347)
	3.0 - 3.5 (41)
	3.5 - 4.0 (1)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (207)
	2005 - 2009 (964)
	2010 - 2014 (959)
	2015 - 2019 (454)
	2020 - 2024 (284)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (412)
	Transferases (325)
	Oxidoreductases (204)
	Lyases (139)
	Ligases (83)
	Isomerases (60)
	Translocases (4)

Membrane Protein Annotation

	OPM (7)
	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Cyclic (1,659)
	Asymmetric (1,184)
	Dihedral (349)
	Tetrahedral (9)
	Octahedral (3)
	Helical (1)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (628)
	Alpha and beta proteins (a+b) (457)
	Artifacts (517)
	All alpha proteins (219)
	All beta proteins (149)
	Multi-domain proteins (alpha and beta) (61)
	Small proteins (12)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 2,884 Structures

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1CS7 \| pdb_00001cs7	Download File View File

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Lewis, F.D., Liu, X., Wu, Y., Miller, S.E., Wasielewski, M.R., Letsinger, R.L., Sanishvili, R., Joachimiak, A., Tereshko, V., Egli, M.

(1999) J Am Chem Soc 121: 9905-9906

Released	2001-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Macromolecule	5'-D(GP(BRU)PTPTPTPGP(S02)CPAPAPAPAPC)-3' (nucleic acid)
Unique Ligands	SR

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1D8X \| pdb_00001d8x	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.2 Å
Macromolecule	5'-D(CPCPGPAPAPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	MG, NCO

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1D9K \| pdb_00001d9k	Download File View File

CRYSTAL STRUCTURE OF COMPLEX BETWEEN D10 TCR AND PMHC I-AK/CA

Reinherz, E.L., Tan, K., Tang, L., Kern, P., Liu, J.-H., Xiong, Y., Hussey, R.E., Smolyar, A., Hare, B., Zhang, R., Joachimiak, A., Chang, H.-C., Wagner, G., Wang, J.-H.

(1999) Science 286: 1913-1921

Released	1999-12-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	CONALBUMIN PEPTIDE (protein) MHC I-AK A CHAIN (ALPHA CHAIN) (protein) MHC I-AK B CHAIN (BETA CHAIN) (protein) T-CELL RECEPTOR D10 (ALPHA CHAIN) (protein) T-CELL RECEPTOR D10 (BETA CHAIN) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

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1D9R \| pdb_00001d9r	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	5'-D(CPCPGPAPAP(BRU)PGPAPGPG)-3' (nucleic acid)
Unique Ligands	NCO

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1DCR \| pdb_00001dcr	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(CPCPGPAPAP(BRU)PGPAPGPG)-3' (nucleic acid)
Unique Ligands	MG, NA, SPM

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1DNO \| pdb_00001dno	Download File View File

A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	DNA/RNA (5'-R(GPCPGP)-D(TPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNT \| pdb_00001dnt	Download File View File

RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA/RNA (5'-R(GPCP)-D(GPTPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNX \| pdb_00001dnx	Download File View File

RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA/RNA (5'-R(GP)-D(CPGPTPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNZ \| pdb_00001dnz	Download File View File

A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(APCPCPGPGPCPCPGPGPT)-3') (nucleic acid)
Unique Ligands	MG

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1DPL \| pdb_00001dpl	Download File View File

A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.83 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG, SPM

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1DPN \| pdb_00001dpn	Download File View File

B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.95 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAP(TAF)PTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	MG

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1DW9 \| pdb_00001dw9	Download File View File

Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE LYASE (protein)
Unique Ligands	CL, SO4

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1DWK \| pdb_00001dwk	Download File View File

STRUCTURE OF CYANASE WITH THE DI-ANION OXALATE BOUND AT THE ENZYME ACTIVE SITE

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A.

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE HYDRATASE (protein)
Unique Ligands	OXL, SO4

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1EG2 \| pdb_00001eg2	Download File View File

CRYSTAL STRUCTURE OF RHODOBACTER SPHEROIDES (N6 ADENOSINE) METHYLTRANSFERASE (M.RSRI)

Scavetta, R.D., Thomas, C.B., Walsh, M.A., Szegedi, S., Joachimiak, A., Gumport, R.I., Churchill, M.E.A., Midwest Center for Structural Genomics (MCSG)

(2000) Nucleic Acids Res 28: 3950-3961

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cereibacter sphaeroides
Macromolecule	MODIFICATION METHYLASE RSRI (protein)
Unique Ligands	MTA

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1EG3 \| pdb_00001eg3	Download File View File

STRUCTURE OF A DYSTROPHIN WW DOMAIN FRAGMENT IN COMPLEX WITH A BETA-DYSTROGLYCAN PEPTIDE

Huang, X., Poy, F., Zhang, R., Joachimiak, A., Sudol, M., Eck, M.J.

(2000) Nat Struct Biol 7: 634-638

Released	2000-08-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DYSTROPHIN (protein)

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1EG4 \| pdb_00001eg4	Download File View File

STRUCTURE OF A DYSTROPHIN WW DOMAIN FRAGMENT IN COMPLEX WITH A BETA-DYSTROGLYCAN PEPTIDE

Huang, X., Poy, F., Zhang, R., Joachimiak, A., Sudol, M., Eck, M.J.

(2000) Nat Struct Biol 7: 634-638

Released	2000-08-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BETA-DYSTROGLYCAN (protein) DYSTROPHIN (protein)

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1EXZ \| pdb_00001exz	Download File View File

STRUCTURE OF STEM CELL FACTOR

Zhang, Z., Zhang, R., Joachimiak, A., Schlessinger, J., Kong, X.

(2000) Proc Natl Acad Sci U S A 97: 7732-7737

Released	2000-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	STEM CELL FACTOR (protein)
Unique Ligands	CA, SM, TRS

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1G2R \| pdb_00001g2r	Download File View File

Structure of Cytosolic Protein of Unknown Function Coded by Gene from NUSA/INFB Region, a YlxR Homologue

Osipiuk, J., Gornicki, P., Maj, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2001) Acta Crystallogr D Biol Crystallogr 57: 1747-1751

Released	2001-08-29
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYPOTHETICAL CYTOSOLIC PROTEIN (protein)
Unique Ligands	SO4

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1G60 \| pdb_00001g60	Download File View File

Crystal Structure of Methyltransferase MboIIa (Moraxella bovis)

Osipiuk, J., Walsh, M.A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2003) Nucleic Acids Res 31: 5440-5448

Released	2002-05-01
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Moraxella bovis
Macromolecule	Adenine-specific Methyltransferase MboIIA (protein)
Unique Ligands	NA, SAM

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1GHE \| pdb_00001ghe	Download File View File

CRYSTAL STRUCTURE OF TABTOXIN RESISTANCE PROTEIN COMPLEXED WITH AN ACYL COENZYME A

He, H., Ding, Y., Bartlam, M., Sun, F., Le, Y., Qin, X., Tang, H., Zhang, R., Joachimiak, A., Liu, Y., Zhao, N., Rao, Z.

(2003) J Mol Biology 325: 1019-1030

Released	2003-01-14
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas amygdali pv. tabaci
Macromolecule	ACETYLTRANSFERASE (protein)
Unique Ligands	ACO

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1GRL \| pdb_00001grl	Download File View File

THE CRYSTAL STRUCTURE OF THE BACTERIAL CHAPERONIN GROEL AT 2.8 ANGSTROMS

Braig, K., Otwinowski, Z., Hegde, R., Boisvert, D.C., Joachimiak, A., Horwich, A.L., Sigler, P.B.

(1994) Nature 371: 578-586

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	GROEL (HSP60 CLASS) (protein)

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1HJO \| pdb_00001hjo	Download File View File

ATPase domain of human heat shock 70kDa protein 1

Osipiuk, J., Walsh, M.A., Freeman, B.C., Morimoto, R.I., Joachimiak, A.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1105-1107

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HEAT-SHOCK 70KD PROTEIN) (protein)
Unique Ligands	ADP, CA, CL

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1HRU \| pdb_00001hru	Download File View File

THE STRUCTURE OF THE YRDC GENE PRODUCT FROM E.COLI

Teplova, M., Tereshko, V., Sanishvili, R., Joachimiak, A., Bushueva, T., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)

(2000) Protein Sci 9: 2557-2566

Released	2001-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	YRDC GENE PRODUCT (protein)
Unique Ligands	PO4

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1I36 \| pdb_00001i36	Download File View File

Structure of Conserved Protein MTH1747 of Unknown Function Reveals Structural Similarity with 3-Hydroxyacid Dehydrogenases

Korolev, S.V., Dementieva, I.S., Christendat, D., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2002-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	CONSERVED HYPOTHETICAL PROTEIN MTH1747 (protein)
Unique Ligands	NAP

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1I3W \| pdb_00001i3w	Download File View File

ACTINOMYCIN D BINDING TO CGATCGATCG

Robinson, H., Gao, Y.-G., Yang, X.-L., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2001) Biochemistry 40: 5587

Released	2001-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(CGPAPTPCPGPAP(BRU)PCPGP)-3' (nucleic acid)

1 to 25 of 2,884 Structures

Page 1 of 116

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CS7 | pdb_00001cs7

1D8X | pdb_00001d8x

1D9K | pdb_00001d9k

1D9R | pdb_00001d9r

1DCR | pdb_00001dcr

1DNO | pdb_00001dno

1DNT | pdb_00001dnt

1DNX | pdb_00001dnx

1DNZ | pdb_00001dnz

1DPL | pdb_00001dpl

1DPN | pdb_00001dpn

1DW9 | pdb_00001dw9

1DWK | pdb_00001dwk

1EG2 | pdb_00001eg2

1EG3 | pdb_00001eg3

1EG4 | pdb_00001eg4

1EXZ | pdb_00001exz

1G2R | pdb_00001g2r

1G60 | pdb_00001g60

1GHE | pdb_00001ghe

1GRL | pdb_00001grl

1HJO | pdb_00001hjo

1HRU | pdb_00001hru

1I36 | pdb_00001i36

1I3W | pdb_00001i3w