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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Khare, B."

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Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Bacillus subtilis (16)
	Plasmodium falciparum 3D7 (9)
	Homo sapiens (7)
	Saccharomyces cerevisiae (6)
	Thermus thermophilus (4)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Cryphonectria parasitica (2)
	Equus caballus (2)
	Rhodobacter capsulatus (2)
	Thermus thermophilus HB8 (2)

More...

Taxonomy

	Bacteria (30)
	Eukaryota (29)
	unclassified bacterial viruses (3)
	Archaea (2)
	Duplodnaviria (2)
	Adnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (64)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (67)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (15)
	2.0 - 2.5 (26)
	2.5 - 3.0 (13)
	3.0 - 3.5 (5)
	> 4.5 (3)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (7)
	2000 - 2004 (12)
	2005 - 2009 (18)
	2010 - 2014 (13)
	2015 - 2019 (4)
	2020 - 2024 (9)

Enzyme Classification Name

	Lyases (20)
	Oxidoreductases (13)
	Transferases (11)
	Hydrolases (2)
	Ligases (2)

Membrane Protein Annotation

	mpstruc (3)
	OPM (1)

Symmetry Type

	Asymmetric (36)
	Cyclic (27)
	Dihedral (3)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (37)
	Alpha and beta proteins (a+b) (13)
	All beta proteins (8)
	All alpha proteins (1)
	Artifacts (2)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 67 Structures

Page 1 of 3

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1AD2 \| pdb_00001ad2	Download File View File

RIBOSOMAL PROTEIN L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE

Unge, J., Al-Karadaghi, S., Liljas, A., Jonsson, B.-H., Eliseikina, I., Ossina, N., Nevskaya, N., Fomenkova, N., Garber, M., Nikonov, S.

(1997) FEBS Lett 411: 53-59

Released	1997-05-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN L1 (protein)
Unique Ligands	HG, MRD, SO4

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1AK1 \| pdb_00001ak1	Download File View File

FERROCHELATASE FROM BACILLUS SUBTILIS

Al-Karadaghi, S., Hansson, M., Nikonov, S., Jonsson, B., Hederstedt, L.

(1997) Structure 5: 1501-1510

Released	1997-12-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	FERROCHELATASE (protein)

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1AN7 \| pdb_00001an7	Download File View File

RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS

Nevskaya, N., Nikonov, S., Al-Karadaghi, S.

(1998) J Mol Biology 279: 233-244

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S8 (protein)

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1BXE \| pdb_00001bxe	Download File View File

RIBOSOMAL PROTEIN L22 FROM THERMUS THERMOPHILUS

Unge, J., Aberg, A., Al-Karadaghi, S., Nikulin, A., Nikonov, S., Davydova, N., Nevskaya, N., Garber, M., Liljas, A.

(1998) Structure 6: 1577-1586

Released	1998-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (RIBOSOMAL PROTEIN L22) (protein)
Unique Ligands	CL

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1C1H \| pdb_00001c1h	Download File View File

CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FERROCHELATASE IN COMPLEX WITH N-METHYL MESOPORPHYRIN

Lecerof, D., Fodje, M., Hansson, A., Hansson, M., Al-Karadaghi, S.

(2000) J Mol Biology 297: 221-232

Released	2000-03-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	FERROCHELATASE (protein)
Unique Ligands	MG, MMP

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1C9E \| pdb_00001c9e	Download File View File

STRUCTURE OF FERROCHELATASE WITH COPPER(II) N-METHYLMESOPORPHYRIN COMPLEX BOUND AT THE ACTIVE SITE

Lecerof, D., Fodje, M.N., Hansson, A., Hansson, M., Al-Karadaghi, S.

(2000) J Mol Biology 297: 221-232

Released	2000-03-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	PROTOHEME FERROLYASE (protein)
Unique Ligands	MG, MP1

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1CJS \| pdb_00001cjs	Download File View File

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII

Nevskaya, N., Tishchenko, S., Fedorov, R., Al-Karadaghi, S., Liljas, A., Kraft, A., Piendl, W., Garber, M., Nikonov, S.

(2000) Structure 8: 363-371

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S RIBOSOMAL PROTEIN L1P (protein)

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1DAR \| pdb_00001dar	Download File View File

ELONGATION FACTOR G IN COMPLEX WITH GDP

Al-Karadaghi, S., Aevarsson, A., Garber, M., Zheltonosova, J., Liljas, A.

(1996) Structure 4: 555-565

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GDP

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1DD5 \| pdb_00001dd5	Download File View File

CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF

Selmer, M., Al-Karadaghi, S., Hirokawa, G., Kaji, A., Liljas, A.

(1999) Science 286: 2349-2352

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Thermotoga maritima
Macromolecule	RIBOSOME RECYCLING FACTOR (protein)
Unique Ligands	ACY

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1DOZ \| pdb_00001doz	Download File View File

CRYSTAL STRUCTURE OF FERROCHELATASE

Lecerof, D., Fodje, M., Hansson, A., Hansson, M., Al-Karadaghi, S.

(2000) J Mol Biology 297: 221-232

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	FERROCHELATASE (protein)
Unique Ligands	MG

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1ELO \| pdb_00001elo	Download File View File

ELONGATION FACTOR G WITHOUT NUCLEOTIDE

Aevarsson, A., Brazhnikov, E., Garber, M., Zheltonosova, J., Chirgadze, Yu., Al-Karadaghi, S., Svensson, L.A., Liljas, A.

(1994) EMBO J 13: 3669-3677

Released	1996-08-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR G (protein)

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1EPL \| pdb_00001epl	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Al-Karadaghi, S., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS1, PRO-LEU-GLU-PSA-ARG-LEU (protein)

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1FEU \| pdb_00001feu	Download File View File

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.

Fedorov, R.V., Meshcheryakov, V.A., Gongadze, G.M., Fomenkova, N.P., Nevskaya, N.A., Selmer, M., Laurberg, M., Kristensen, O., Al-Karadaghi, S., Liljas, A., Garber, M.B., Nikonov, S.V.

(2001) Acta Crystallogr D Biol Crystallogr 57: 968-976

Released	2001-06-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	50S RIBOSOMAL PROTEIN L25 (protein) 19 NT FRAGMENT OF 5S RRNA (nucleic acid) 21 NT FRAGMENT OF 5S RRNA (nucleic acid)
Unique Ligands	CD, MG

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1G8P \| pdb_00001g8p	Download File View File

CRYSTAL STRUCTURE OF BCHI SUBUNIT OF MAGNESIUM CHELATASE

Fodje, M.N., Hansson, A., Hansson, M., Olsen, J.G., Gough, S., Willows, R.D., Al-Karadaghi, S.

(2001) J Mol Biology 311: 111-122

Released	2001-08-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rhodobacter capsulatus
Macromolecule	MAGNESIUM-CHELATASE 38 KDA SUBUNIT (protein)

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1L8X \| pdb_00001l8x	Download File View File

Crystal Structure of Ferrochelatase from the Yeast, Saccharomyces cerevisiae, with Cobalt(II) as the Substrate Ion

Karlberg, T., Lecerof, D., Gora, M., Silvegren, G., Labbe-Bois, R., Hansson, M., Al-Karadaghi, S.

(2002) Biochemistry 41: 13499-13506

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ferrochelatase (protein)
Unique Ligands	CO

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1LBQ \| pdb_00001lbq	Download File View File

The crystal structure of Saccharomyces cerevisiae ferrochelatase

Karlberg, T., Lecerof, D., Gora, M., Silvegren, G., Labbe-Bois, R., Hansson, M., Al-Karadaghi, S.

(2002) Biochemistry 41: 13499-13506

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ferrochelatase (protein)

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1LD3 \| pdb_00001ld3	Download File View File

Crystal Structure of B. subilis ferrochelatase with Zn(2+) bound at the active site.

Lecerof, D., Fodje, M.N., Leon, R.A., Olsson, U., Hansson, A., Sigfridsson, E., Ryde, U., Hansson, M., Al-Karadaghi, S.

(2003) J Biol Inorg Chem 8: 452-458

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis
Macromolecule	Ferrochelatase (protein)
Unique Ligands	ZN

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1N0I \| pdb_00001n0i	Download File View File

Crystal Structure of Ferrochelatase with Cadmium bound at active site

Lecerof, D., Fodje, M.N., Leon, R.A., Olsson, U., Hansson, A., Sigfridsson, E., Ryde, U., Hansson, M., Al-Karadaghi, S.

(2003) J Biol Inorg Chem 8: 452-458

Released	2003-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Ferrochelatase (protein)
Unique Ligands	CD, CL, MG

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1TDQ \| pdb_00001tdq	Download File View File

Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins

Lundell, A., Olin, A.I., Moergelin, M., al-Karadaghi, S., Aspberg, A., Logan, D.T.

(2004) Structure 12: 1495-1506

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	Aggrecan core protein (protein) Tenascin-R (protein)
Unique Ligands	CA

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1WB8 \| pdb_00001wb8	Download File View File

Iron Superoxide Dismutase (FE-SOD) from the Hyperthermophile SULFOLOBUS SOLFATARICUS. 2.3 A Resolution Structure of Recombinant Protein with a Covalently Modified Tyrosine in the Active Site.

Ursby, T., Adinolfi, B.S., Al-Karadaghi, S., De Vendittis, E., Bocchini, V.

(1999) J Mol Biology 286: 189

Released	2004-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	SUPEROXIDE DISMUTASE [FE] (protein)
Unique Ligands	FE, PMS