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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, S."

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Search Summary

This query matches 221 Structures.

Refinements

Structure Determination Methodology

experimental (221)

Scientific Name of Source Organism

	Homo sapiens (56)
	Escherichia coli (16)
	Aspergillus fumigatus Af293 (10)
	Escherichia coli K-12 (10)
	Mus musculus (10)
	Klebsiella pneumoniae (8)
	synthetic construct (8)
	Cupriavidus necator H16 (7)
	Drosophila melanogaster (7)
	Erythrobacter dokdonensis DSW-74 (5)

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Taxonomy

	Bacteria (112)
	Eukaryota (108)
	other sequences (8)
	unclassified sequences (5)
	Riboviria (4)
	Riboviria (RNA viruses and viroids) (2)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (173)
	ELECTRON MICROSCOPY (33)
	SOLUTION NMR (12)
	SOLID-STATE NMR (3)

Polymer Entity Type

	Protein (220)
	RNA (4)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (61)
	2.0 - 2.5 (59)
	2.5 - 3.0 (34)
	3.0 - 3.5 (28)
	3.5 - 4.0 (15)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (15)
	2005 - 2009 (12)
	2010 - 2014 (41)
	2015 - 2019 (61)
	2020 - 2024 (77)
	2025 - 2029 (13)

Enzyme Classification Name

	Oxidoreductases (23)
	Hydrolases (25)
	Transferases (24)
	Ligases (15)
	Lyases (18)
	Translocases (9)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (27)
	MemProtMD (13)
	OPM (11)
	mpstruc (11)

Symmetry Type

	Cyclic (106)
	Asymmetric (91)
	Dihedral (28)
	Octahedral (4)
	Tetrahedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (38)
	All alpha proteins (20)
	All beta proteins (18)
	Artifacts (14)
	Alpha and beta proteins (a+b) (10)
	Peptides (3)
	Small proteins (2)
	Designed proteins (2)

AllSelected

1 to 25 of 221 Structures

Page 1 of 9

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1EUJ \| pdb_00001euj	Download File View File

A NOVEL ANTI-TUMOR CYTOKINE CONTAINS A RNA-BINDING MOTIF PRESENT IN AMINOACYL-TRNA SYNTHETASES

Kim, Y., Shin, J., Li, R., Cheong, C., Kim, S.

(2000) J Biological Chem 275: 27062-27068

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ENDOTHELIAL MONOCYTE ACTIVATING POLYPEPTIDE 2 (protein)

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1FI6 \| pdb_00001fi6	Download File View File

SOLUTION STRUCTURE OF THE REPS1 EH DOMAIN

Kim, S., Baleja, J.D.

(2001) Biochemistry 40: 6776-6785

Released	2001-07-18
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EH DOMAIN PROTEIN REPS1 (protein)
Unique Ligands	CA

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1FYJ \| pdb_00001fyj	Download File View File

SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS).

Jeong, E.-J., Hwang, G.-S., Kim, K.H., Kim, M.J., Kim, S., Kim, K.-S.

(2000) Biochemistry 39: 15775-15782

Released	2001-03-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (protein)

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1I69 \| pdb_00001i69	Download File View File

CRYSTAL STRUCTURE OF THE REDUCED FORM OF OXYR

Choi, H., Kim, S., Ryu, S.

(2001) Cell 105: 103-113

Released	2001-09-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR (protein)
Unique Ligands	BEZ

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1I6A \| pdb_00001i6a	Download File View File

CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF OXYR

Choi, H., Kim, S., Ryu, S.

(2001) Cell 105: 103-113

Released	2001-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR (protein)

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1JE4 \| pdb_00001je4	Download File View File

Solution structure of the monomeric variant of the chemokine MIP-1beta

Kim, S., Jao, S., Laurence, J.S., LiWang, P.J.

(2001) Biochemistry 40: 10782-10791

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	macrophage inflammatory protein 1-beta (protein)

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1KEH \| pdb_00001keh	Download File View File

Precursor structure of cephalosporin acylase

Kim, Y., Kim, S.

(2002) J Biological Chem 277: 2823-2829

Released	2002-05-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevundimonas diminuta
Macromolecule	precursor of cephalosporin acylase (protein)

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1LA4 \| pdb_00001la4	Download File View File

Solution Structure of SGTx1

Lee, C.W., Roh, S.H., Kim, S., Endoh, H., Kodera, Y., Maeda, T., Swartz, K.J., Kim, J.I.

(2004) Biochemistry 43: 890-897

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Stromatopelma calceatum griseipes
Macromolecule	SGTx1 (protein)

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1MP6 \| pdb_00001mp6	Download File View File

Structure of the transmembrane region of the M2 protein H+ channel by solid state NMR spectroscopy

Wang, J., Kim, S., Kovacs, F., Cross, T.A.

(2001) Protein Sci 10: 2241-2250

Released	2002-09-25
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/Udorn/307/1972 H3N2)
Macromolecule	Matrix protein M2 (protein)

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1NYJ \| pdb_00001nyj	Download File View File

The closed state structure of M2 protein H+ channel by solid state NMR spectroscopy

Nishimura, K., Kim, S., Zhang, L., Cross, T.A.

(2002) Biochemistry 41: 13170-13177

Released	2003-03-25
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/USSR/90/1977 H1N1)
Macromolecule	Matrix protein M2 (protein)

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1P68 \| pdb_00001p68	Download File View File

Solution structure of S-824, a de novo designed four helix bundle

Wei, Y., Kim, S., Fela, D., Baum, J., Hecht, M.H.

(2003) Proc Natl Acad Sci U S A 100: 13270-13273

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	De novo designed protein S-824 (protein)

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1PUL \| pdb_00001pul	Download File View File

Solution structure for the 21KDa caenorhabditis elegans protein CE32E8.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR33

Tejero, R., Aramini, J.M., Swapna, G.V.T., Monleon, D., Chiang, Y., Macapagal, D., Gunsalus, K.C., Kim, S., Szyperski, T., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

(2004) J Biomol NMR 28: 91-92

Released	2005-06-21
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Hypothetical protein C32E8.3 in chromosome I (protein)

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1R1A \| pdb_00001r1a	Download File View File

CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS SEROTYPE 1A (HRV1A)

Kim, S., Rossmann, M.G.

(1989) J Mol Biology 210: 91-111

Released	1990-07-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human rhinovirus 1A
Macromolecule	HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) (protein) HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) (protein) HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) (protein) HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP4) (protein)
Unique branched monosaccharides	FRU, GLC

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1RKJ \| pdb_00001rkj	Download File View File

Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target

Johansson, C., Finger, L.D., Trantirek, L., Mueller, T.D., Kim, S., Laird-Offringa, I.A., Feigon, J.

(2004) J Mol Biology 337: 799-816

Released	2004-04-27
Method	SOLUTION NMR
Organisms	Mesocricetus auratus
Macromolecule	Nucleolin (protein) 5'-R(GPGPAPUPGPCPCPUPCPCPCPGPAPGPUPGPCPAPUPCP*C)-3' (nucleic acid)

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1RYU \| pdb_00001ryu	Download File View File

Solution Structure of the SWI1 ARID

Kim, S., Zhang, Z., Upchurch, S., Isern, N., Chen, Y.

(2004) J Biological Chem 279: 16670-16676

Released	2004-05-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1 (protein)

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1SJ0 \| pdb_00001sj0	Download File View File

Human Estrogen Receptor Alpha Ligand-binding Domain in Complex with the Antagonist Ligand 4-D

Kim, S., Wu, J.Y., Birzin, E.T., Chan, W., Pai, L.Y., Yang, Y.T., Mosley, R.T., Fitzgerald, P.M., Sharma, N., DiNinno, F., Rohrer, S.P., Schaeffer, J.M., Hammond, M.L.

(2004) J Med Chem 47: 2171-2175

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein)
Unique Ligands	E4D

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1TVI \| pdb_00001tvi	Download File View File

Solution structure of TM1509 from Thermotoga maritima: VT1, a NESGC target protein

Penhoat, C.H., Atreya, H.S., Kim, S., Li, Z., Yee, A., Xiao, R., Murray, D., Arrowsmith, C.H., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2005) J Struct Funct Genomics 6: 51-62

Released	2005-01-04
Method	SOLUTION NMR
Organisms	Thermotoga maritima
Macromolecule	Hypothetical UPF0054 protein TM1509 (protein)

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1ULH \| pdb_00001ulh	Download File View File

A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase

Kise, Y., Sengoku, T., Ishii, R., Yokoyama, S., Park, S.G., Lee, S.W., Kim, S., Nureki, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Nat Struct Mol Biol 11: 149-156

Released	2004-02-03
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Tryptophanyl-tRNA synthetase (protein)

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2JUA \| pdb_00002jua	Download File View File

Assignment, structure, and dynamics of de novo designed protein S836

Go, A., Kim, S., Baum, J.S., Hecht, M.H.

(2008) Protein Sci 17: 821-832

Released	2008-05-20
Method	SOLUTION NMR
Organisms	unidentified
Macromolecule	de novo protein S836 (protein)

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2KSO \| pdb_00002kso	Download File View File

EphA2:SHIP2 SAM:SAM complex

Hota, P.K., Preeti, C., Stetzik, L., Kim, S., Wang, B., Lee, H., Buck, M.

To be published

Released	2011-07-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 2 (protein) Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 (protein)

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2M3G \| pdb_00002m3g	Download File View File

Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy

Wang, S., Munro, R.A., Shi, L., Kawamura, I., Okitsu, T., Wada, A., Kim, S., Jung, K., Brown, L.S., Ladizhansky, V.

(2013) Nat Methods 10: 1007-1012

Released	2013-08-21
Method	SOLID-STATE NMR
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Anabaena Sensory Rhodopsin (protein)
Unique Ligands	RET

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2MLP \| pdb_00002mlp	Download File View File

MICROCIN LEADER PEPTIDE FROM E. COLI, NMR, 25 STRUCTURES

Kim, S., Sinha Roy, R., Walsh, C.T., Baleja, J.D.

(1998) Chem Biol 5: 217-228

Released	1998-07-22
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	MCBA PROPEPTIDE (protein)

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2O0O \| pdb_00002o0o	Download File View File

Crystal structure of TL1A

Jin, T.C., Kim, S., Guo, F., Howard, A.J., Zhang, Y.Z.

(2007) Biochem Biophys Res Commun 364: 1-6

Released	2007-10-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	TNF superfamily ligand TL1A (protein)
Unique Ligands	MG

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2P0M \| pdb_00002p0m	Download File View File

Revised structure of rabbit reticulocyte 15S-lipoxygenase

Choi, J., Chon, J.K., Kim, S., Shin, W.

(2008) Proteins 70: 1023-1032

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Arachidonate 15-lipoxygenase (protein)
Unique Ligands	FE2, RS7