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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kohda, D."

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Homo sapiens (21)
	Escherichia coli K-12 (14)
	Rattus norvegicus (11)
	Archaeoglobus fulgidus DSM 4304 (7)
	synthetic construct (7)
	Mus musculus (6)
	Saccharomyces cerevisiae S288C (5)
	Conus geographus (4)
	Escherichia coli (3)
	Measles morbillivirus (3)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (25)
	Archaea (12)
	Riboviria (8)
	other sequences (7)
	Eukaryota (eukaryotes) (4)

Experimental Method

	X-RAY DIFFRACTION (60)
	SOLUTION NMR (27)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (89)
	DNA (7)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (15)
	2.0 - 2.5 (14)
	2.5 - 3.0 (16)
	3.0 - 3.5 (12)
	3.5 - 4.0 (3)
	> 4.5 (2)

Release Date

	1990 - 1994 (17)
	1995 - 1999 (2)
	2000 - 2004 (6)
	2005 - 2009 (18)
	2010 - 2014 (13)
	2015 - 2019 (25)
	2020 - 2024 (6)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (13)
	Oxidoreductases (8)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (4)
	PDBTM (4)
	mpstruc (4)

Symmetry Type

	Asymmetric (68)
	Cyclic (23)
	Dihedral (2)

SCOP Classification

	All beta proteins (15)
	Small proteins (11)
	Artifacts (7)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)
	Peptides (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 89 Structures

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1BOM \| pdb_00001bom	Download File View File

THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN

Nagata, K., Hatanaka, H., Kohda, D., Inagaki, F.

(1995) J Mol Biology 253: 749-758

Released	1994-11-01
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	BOMBYXIN-II,BOMBYXIN A-2 (protein) BOMBYXIN-II,BOMBYXIN A-6 (protein)

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1BON \| pdb_00001bon	Download File View File

THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN

Nagata, K., Hatanaka, H., Kohda, D., Inagaki, F., Structural Proteomics in Europe (SPINE)

(1995) J Mol Biology 253: 749-758

Released	1995-01-26
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	BOMBYXIN-II,BOMBYXIN A-2 (protein) BOMBYXIN-II,BOMBYXIN A-6 (protein)

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1EPG \| pdb_00001epg	Download File View File

THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS

Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 11928-11939

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EPIDERMAL GROWTH FACTOR (protein)

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1EPH \| pdb_00001eph	Download File View File

THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS

Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 11928-11939

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EPIDERMAL GROWTH FACTOR (protein)

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1EPI \| pdb_00001epi	Download File View File

THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS

Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 11928-11939

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EPIDERMAL GROWTH FACTOR (protein)

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1EPJ \| pdb_00001epj	Download File View File

THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS

Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 11928-11939

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EPIDERMAL GROWTH FACTOR (protein)

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1ERA \| pdb_00001era	Download File View File

TERTIARY STRUCTURE OF ERABUTOXIN B IN AQUEOUS SOLUTION ELUCIDATED BY TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE

Hatanaka, H., Kohda, D., Inagaki, F.

(1994) J Mol Biology 240: 155-166

Released	1994-06-22
Method	SOLUTION NMR
Organisms	Laticauda semifasciata
Macromolecule	ERABUTOXIN B (protein)

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1FRA \| pdb_00001fra	Download File View File

TERTIARY STRUCTURE OF ERABUTOXIN B IN AQUEOUS SOLUTION ELUCIDATED BY TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE

Hatanaka, H., Kohda, D., Inagaki, F.

(1994) J Mol Biology 240: 155-166

Released	1994-06-22
Method	SOLUTION NMR
Organisms	Laticauda semifasciata
Macromolecule	ERABUTOXIN B (protein)

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1GD5 \| pdb_00001gd5	Download File View File

SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOX NADPH OXIDASE

Hiroaki, H., Ago, T., Ito, T., Sumimoto, H., Kohda, D.

(2001) Nat Struct Biol 8: 526-530

Released	2001-06-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL CYTOSOL FACTOR 1 (protein)

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1GFC \| pdb_00001gfc	Download File View File

SOLUTION STRUCTURE AND LIGAND-BINDING SITE OF THE C-TERMINAL SH3 DOMAIN OF GRB2

Kohda, D., Terasawa, H., Hatanaka, H., Inagaki, F.

(1994) Structure 2: 1029-1040

Released	1994-08-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (protein)

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1GFD \| pdb_00001gfd	Download File View File

SOLUTION STRUCTURE AND LIGAND-BINDING SITE OF THE C-TERMINAL SH3 DOMAIN OF GRB2

Kohda, D., Terasawa, H., Hatanaka, H., Inagaki, F.

(1994) Structure 2: 1029-1040

Released	1994-08-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (protein)

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1HRE \| pdb_00001hre	Download File View File

SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4

Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.

(1994) EMBO J 13: 3517-3523

Released	1994-10-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HEREGULIN ALPHA (protein)

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1HRF \| pdb_00001hrf	Download File View File

SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4

Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.

(1994) EMBO J 13: 3517-3523

Released	1994-10-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HEREGULIN ALPHA (protein)

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1HSQ \| pdb_00001hsq	Download File View File

SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA

Kohda, D., Hatanaka, H., Odaka, M., Inagaki, F.

(1993) Cell 72: 953-960

Released	1994-08-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PHOSPHOLIPASE C-GAMMA (SH3 DOMAIN) (protein)

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1K4U \| pdb_00001k4u	Download File View File

Solution structure of the C-terminal SH3 domain of p67phox complexed with the C-terminal tail region of p47phox

Kami, K., Takeya, R., Sumimoto, H., Kohda, D.

(2002) EMBO J 21: 4268-4276

Released	2002-04-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PHAGOCYTE NADPH OXIDASE SUBUNIT P47PHOX (protein) PHAGOCYTE NADPH OXIDASE SUBUNIT P67PHOX (protein)

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1L4V \| pdb_00001l4v	Download File View File

SOLUTION STRUCTURE OF SAPECIN

Hanzawa, H., Iwai, H., Takeuchi, K., Kuzuhara, T., Komano, H., Kohda, D., Inagaki, F., Natori, S., Arata, Y., Shimada, I.

(1990) FEBS Lett 269: 413-420

Released	2002-03-27
Method	SOLUTION NMR
Organisms	Sarcophaga peregrina
Macromolecule	Sapecin (protein)

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1OM2 \| pdb_00001om2	Download File View File

SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH)

Abe, Y., Shodai, T., Muto, T., Mihara, K., Torii, H., Nishikawa, S., Endo, T., Kohda, D.

(2000) Cell 100: 551-560

Released	2000-02-02
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE) (protein) PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20) (protein)

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1TCG \| pdb_00001tcg	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Kohda, D., Lancelin, J.-M., Inagaki, F., Wakamatsu, K.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCH \| pdb_00001tch	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Lancelin, J.-M., Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCJ \| pdb_00001tcj	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Kohda, D., Lancelin, J.-M., Inagaki, F., Wakamatsu, K.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCK \| pdb_00001tck	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Lancelin, J.-M., Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1UFU \| pdb_00001ufu	Download File View File

Crystal structure of ligand binding domain of immunoglobulin-like transcript 2 (ILT2; LIR-1)

Shiroishi, M., Amano, K., Rasubala, L., Tsumoto, K., Kumagai, I., Kohda, D., Maenaka, K.

To be published

Released	2004-08-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Immunoglobulin-like transcript 2 (protein)

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1UGN \| pdb_00001ugn	Download File View File

Crystal structure of LIR1.02, one of the alleles of LIR1

Shiroishi, M., Rasubala, L., Kuroki, K., Amano, K., Tsuchiya, N., Tokunaga, K., Kohda, D., Maenaka, K.

(2005) Hum Mol Genet 14: 2469-2480

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Leukocyte immunoglobulin-like receptor 1 (protein)

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1VDG \| pdb_00001vdg	Download File View File

Crystal structure of LIR1.01, one of the alleles of LIR1

Shiroishi, M., Rasubala, L., Kuroki, K., Amano, K., Tsuchiya, N., Tokunaga, K., Kohda, D., Maenaka, K.

To be published

Released	2005-08-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Leukocyte immunoglobulin-like receptor subfamily B member 1 (protein)