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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Li, N."

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Search Summary

This query matches 133 Structures.

Refinements

Structure Determination Methodology

experimental (133)

Scientific Name of Source Organism

	Homo sapiens (29)
	Enterovirus A71 (14)
	Mus musculus (9)
	synthetic construct (8)
	Escherichia coli K-12 (7)
	HTLV-1 subtype C (7)
	Saccharomyces cerevisiae S288C (7)
	Bacillus subtilis subsp. subtilis str. 168 (6)
	Bacteroides sp. 3_1_23 (5)
	Vibrio cholerae (5)

More...

Taxonomy

	Eukaryota (57)
	Bacteria (47)
	Riboviria (22)
	other sequences (8)
	Varidnaviria (6)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (78)
	ELECTRON MICROSCOPY (54)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (133)
	RNA (15)
	DNA (8)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (12)
	1.5 - 2.0 (25)
	2.0 - 2.5 (22)
	2.5 - 3.0 (19)
	3.0 - 3.5 (19)
	3.5 - 4.0 (15)
	4.0 - 4.5 (2)
	> 4.5 (17)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (1)
	2010 - 2014 (31)
	2015 - 2019 (40)
	2020 - 2024 (47)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (39)
	Transferases (18)
	Oxidoreductases (8)
	Lyases (5)
	Isomerases (1)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (7)
	MemProtMD (5)
	OPM (3)
	mpstruc (2)

Symmetry Type

	Asymmetric (90)
	Cyclic (38)
	Dihedral (6)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a/b) (16)
	Artifacts (16)
	Alpha and beta proteins (a+b) (5)
	Membrane and cell surface proteins and peptides (1)
	Peptides (1)
	Small proteins (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 133 Structures

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1AV2 \| pdb_00001av2	Download File View File

Gramicidin A/CsCl complex, active as a dimer

Burkhart, B.M., Li, N., Langs, D.A., Duax, W.L.

(1998) Proc Natl Acad Sci U S A 95: 12950

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	CL, CS, MOH

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1BS9 \| pdb_00001bs9	Download File View File

ACETYLXYLAN ESTERASE FROM P. PURPUROGENUM REFINED AT 1.10 ANGSTROMS

Ghosh, D., Erman, M., Sawicki, M.W., Lala, P., Weeks, D.R., Li, N., Pangborn, W., Thiel, D.J., Jornvall, H., Eyzaguirre, J.

(1999) Acta Crystallogr D Biol Crystallogr 55: 779-784

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Talaromyces purpureogenus
Macromolecule	ACETYL XYLAN ESTERASE (protein)
Unique Ligands	SO4

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1F90 \| pdb_00001f90	Download File View File

FAB FRAGMENT OF MONOCLONAL ANTIBODY (LNKB-2) AGAINST HUMAN INTERLEUKIN-2 IN COMPLEX WITH ANTIGENIC PEPTIDE

Afonin, P.V., Fokin, A.V., Tsigannik, I.N., Mikhailova, I.Y., Onoprienko, L.V., Mikhaleva, I.I., Ivanov, V.T., Mareeva, T.Y., Nesmeyanov, V.A., Li, N., Duax, W.L., Pletnev, V.Z.

(2001) Protein Sci 10: 1514-1521

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	ANTIGENIC NONAPEPTIDE (protein) FAB FRAGMENT OF MONOCLONAL ANTIBODY (protein)

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1I1S \| pdb_00001i1s	Download File View File

SOLUTION STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN OF THE BACTERIOPHAGE T4 PROTEIN MOTA

Li, N., Zhang, W., White, S.W., Kriwacki, R.W.

(2001) Biochemistry 40: 4293-4302

Released	2001-02-14
Method	SOLUTION NMR
Organisms	Tequatrovirus T4
Macromolecule	MOTA (protein)

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1IAX \| pdb_00001iax	Download File View File

CRYSTAL STRUCTURE OF ACC SYNTHASE COMPLEXED WITH PLP

Huai, Q., Xia, Y., Chen, Y., Callahan, B., Li, N., Ke, H.

(2001) J Biological Chem 276: 38210-38216

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Solanum lycopersicum
Macromolecule	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 (protein)
Unique Ligands	PLP, SO4

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1IAY \| pdb_00001iay	Download File View File

CRYSTAL STRUCTURE OF ACC SYNTHASE COMPLEXED WITH COFACTOR PLP AND INHIBITOR AVG

Huai, Q., Xia, Y., Chen, Y., Callahan, B., Li, N., Ke, H.

(2001) J Biological Chem 276: 38210-38216

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Solanum lycopersicum
Macromolecule	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 (protein)
Unique Ligands	AVG, PLP

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1KAF \| pdb_00001kaf	Download File View File

DNA Binding Domain Of The Phage T4 Transcription Factor MotA (AA105-211)

Li, N., Sickmier, E.A., Zhang, R., Joachimiak, A., White, S.W.

(2002) Mol Microbiol 43: 1079-1088

Released	2001-11-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tequatrovirus T4
Macromolecule	Transcription regulatory protein MOTA (protein)

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1KP6 \| pdb_00001kp6	Download File View File

USTILAGO MAYDIS KILLER TOXIN KP6 ALPHA-SUBUNIT

Li, N., Erman, M., Pangborn, W., Duax, W.L., Park, C.-M., Bruenn, J., Ghosh, D.

(1999) J Biological Chem 274: 20425-20431

Released	1999-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycosarcoma maydis
Macromolecule	PROTEIN (TOXIN) (protein)
Unique Ligands	SO4

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1M53 \| pdb_00001m53	Download File View File

CRYSTAL STRUCTURE OF ISOMALTULOSE SYNTHASE (PALI) FROM KLEBSIELLA SP. LX3

Li, N., Swaminathan, K.

(2003) J Biological Chem 278: 35428-35434

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Klebsiella sp. LX3
Macromolecule	Isomaltulose Synthase (protein)

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1WZA \| pdb_00001wza	Download File View File

Crystal structure of alpha-amylase from H.orenii

Sivakumar, N., Swaminathan, K., Li, N.

(2006) FEBS Lett 580: 2646-2652

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halothermothrix orenii
Macromolecule	alpha-amylase A (protein)
Unique Ligands	CA

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2AXE \| pdb_00002axe	Download File View File

IODINATED COMPLEX OF ACETYL XYLAN ESTERASE AT 1.80 ANGSTROMS

Ghosh, D., Erman, M., Sawicki, M.W., Lala, P., Weeks, D.R., Li, N., Pangborn, W., Thiel, D.J., Jornvall, H., Eyzaguirre, J.

(1999) Acta Crystallogr D Biol Crystallogr 55: 779-784

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Talaromyces purpureogenus
Macromolecule	ACETYL XYLAN ESTERASE (protein)
Unique Ligands	SO4

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3J3R \| pdb_00003j3r	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3S \| pdb_00003j3s	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3T \| pdb_00003j3t	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3U \| pdb_00003j3u	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3V \| pdb_00003j3v	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 13.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 22 Unique nucleic acid chains: 2

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3J3W \| pdb_00003j3w	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 10.7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 1

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3J8G \| pdb_00003j8g	Download File View File

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Zhang, X., Yan, K., Zhang, Y., Li, N., Ma, C., Li, Z., Zhang, Y., Feng, B., Liu, J., Sun, Y., Xu, Y., Lei, J., Gao, N.

(2014) Nucleic Acids Res

Released	2014-11-26
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2

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3JA8 \| pdb_00003ja8	Download File View File

Cryo-EM structure of the MCM2-7 double hexamer

Li, N., Zhai, Y., Zhang, Y., Li, W., Yang, M., Lei, J., Tye, B.K., Gao, N.

(2015) Nature 524: 186-191

Released	2015-08-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP

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3JAC \| pdb_00003jac	Download File View File

Cryo-EM study of a channel

Ge, J., Li, W., Zhao, Q., Li, N., Xiao, B., Gao, N., Yang, M.

(2015) Nature 527: 64-69

Released	2015-09-23
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Mus musculus
Macromolecule	Piezo-type mechanosensitive ion channel component 1 (protein)

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3KM5 \| pdb_00003km5	Download File View File

Crystal Structure Analysis of the K2 Cleaved Adhesin Domain of Lys-gingipain (Kgp)

Li, N., Collyer, C.A., Hunter, N.

(2010) Mol Microbiol 76: 861-873

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Lysine specific cysteine protease (protein)
Unique Ligands	CA, GOL, NO3, SO4

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3M1H \| pdb_00003m1h	Download File View File

Crystal Structure Analysis of the K3 Cleaved Adhesin Domain of Lys-gingipain (Kgp) from Porphyromonas gingivalis w83

Li, N., Collyer, C.A., Hunter, N.

(2011) Mol Microbiol 81: 1358-1373

Released	2011-03-23
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Lysine specific cysteine protease (protein)
Unique Ligands	CA, NA

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3O72 \| pdb_00003o72	Download File View File

Crystal structure of EfeB in complex with heme

Liu, X., Du, Q., Wang, Z., Zhu, D., Huang, Y., Li, N., Xu, S., Gu, L.

(2011) J Biological Chem 286: 14922-14931

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli O157:H7 str. TW14359
Macromolecule	Redox component of a tripartite ferrous iron transporter (protein)
Unique Ligands	HEM, OXY

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3PFT \| pdb_00003pft	Download File View File

Crystal Structure of Untagged C54A Mutant Flavin Reductase (DszD) in Complex with FMN From Mycobacterium goodii

Li, Q., Xu, P., Ma, C., Gu, L., Liu, X., Zhang, C., Li, N., Su, J., Li, B., Liu, S.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Mycolicibacterium goodii
Macromolecule	Flavin reductase (protein)
Unique Ligands	FMN

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3R5S \| pdb_00003r5s	Download File View File

Crystal structure of apo-ViuP

Li, N., Zhang, C., Li, B., Liu, X., Huang, Y., Xu, S., Gu, L.

(2012) J Biological Chem 287: 8912-8919

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.791 Å
Organisms	Vibrio cholerae
Macromolecule	Ferric vibriobactin ABC transporter, periplasmic ferric vibriobactin-binding protein (protein)

1 to 25 of 133 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AV2 | pdb_00001av2

1BS9 | pdb_00001bs9

1F90 | pdb_00001f90

1I1S | pdb_00001i1s

1IAX | pdb_00001iax

1IAY | pdb_00001iay

1KAF | pdb_00001kaf

1KP6 | pdb_00001kp6

1M53 | pdb_00001m53

1WZA | pdb_00001wza

2AXE | pdb_00002axe

3J3R | pdb_00003j3r

3J3S | pdb_00003j3s

3J3T | pdb_00003j3t

3J3U | pdb_00003j3u

3J3V | pdb_00003j3v

3J3W | pdb_00003j3w

3J8G | pdb_00003j8g

3JA8 | pdb_00003ja8

3JAC | pdb_00003jac

3KM5 | pdb_00003km5

3M1H | pdb_00003m1h

3O72 | pdb_00003o72

3PFT | pdb_00003pft

3R5S | pdb_00003r5s