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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Miller, T.C.R."

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Search Summary

This query matches 172 Structures.

Refinements

Structure Determination Methodology

experimental (172)

Scientific Name of Source Organism

	Homo sapiens (50)
	Mus musculus (30)
	Escherichia coli K-12 (24)
	Escherichia coli (21)
	synthetic construct (18)
	Lama glama (14)
	Halobacterium salinarum (7)
	Gloeobacter violaceus PCC 7421 (4)
	Saccharomyces cerevisiae (4)
	Acetabularia acetabulum (3)

More...

Taxonomy

	Eukaryota (108)
	Bacteria (69)
	other sequences (18)
	Archaea (13)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (112)
	ELECTRON MICROSCOPY (60)

Polymer Entity Type

Protein (172)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (16)
	2.0 - 2.5 (33)
	2.5 - 3.0 (60)
	3.0 - 3.5 (38)
	3.5 - 4.0 (19)
	4.0 - 4.5 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (8)
	2010 - 2014 (11)
	2015 - 2019 (32)
	2020 - 2024 (108)
	2025 - 2029 (9)

Enzyme Classification Name

	Translocases (5)
	Transferases (11)
	Oxidoreductases (8)
	Isomerases (4)
	Hydrolases (2)

Membrane Protein Annotation

	PDBTM (145)
	MemProtMD (102)
	OPM (66)
	mpstruc (96)

Symmetry Type

	Asymmetric (103)
	Cyclic (70)
	Dihedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (21)
	All beta proteins (12)
	Artifacts (6)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (2)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 172 Structures

Page 1 of 7

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1GKA \| pdb_00001gka	Download File View File

The molecular basis of the coloration mechanism in lobster shell. beta-crustacyanin at 3.2 A resolution

Cianci, M., Rizkallah, P.J., Olczak, A., Raftery, J., Chayen, N.E., Zagalsky, P.F., Helliwell, J.R.

(2002) Proc Natl Acad Sci U S A 99: 9795

Released	2002-08-08
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homarus gammarus
Macromolecule	CRUSTACYANIN A1 SUBUNIT (protein) CRUSTACYANIN A2 SUBUNIT (protein)
Unique Ligands	AXT, D12, EPE, TRS

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1GZP \| pdb_00001gzp	Download File View File

CD1b in complex with GM2 ganglioside

Gadola, S.D., Zaccai, N.R., Harlos, K., Shepherd, D., Ritter, G., Schmidt, R.R., Jones, E.Y., Cerundolo, V.

(2002) Nat Immunol 3: 721-726

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	B2-MICROGLOBULIN (protein) T-CELL SURFACE GLYCOPROTEIN CD1B (protein)
Unique Ligands	D12, GM2, TWT

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1GZQ \| pdb_00001gzq	Download File View File

CD1b in complex with Phophatidylinositol

Gadola, S.D., Zaccai, N.R., Harlos, K., Shepherd, D., Ritter, G., Schmidt, R.R., Jones, E.Y., Cerundolo, V.

(2002) Nat Immunol 3: 721

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens
Macromolecule	B2-MICROGLOBULIN (protein) T-CELL SURFACE GLYCOPROTEIN CD1B (protein)
Unique Ligands	D12, NO3, PII, TWT

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1OSM \| pdb_00001osm	Download File View File

OSMOPORIN (OMPK36) FROM KLEBSIELLA PNEUMONIAE

Dutzler, R., Schirmer, T.

(1999) Structure 7: 425-434

Released	1999-07-26
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	OMPK36 (protein)
Unique Ligands	D12

Explore in 3D

1TI1 \| pdb_00001ti1	Download File View File

crystal structure of a mutant DsbA

Kone, A., Serre, L.

(2005) J Mol Biology 347: 555-563

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Thiol:disulfide interchange protein dsbA (protein)
Unique Ligands	D12

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1XJI \| pdb_00001xji	Download File View File

Bacteriorhodopsin crystallized in bicelles at room temperature

Faham, S., Boulting, G.L., Massey, E.A., Yohannan, S., Yang, D., Bowie, J.U.

(2005) Protein Sci 14: 836-840

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, CPS, D10, D12, OCT, RET

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2H4T \| pdb_00002h4t	Download File View File

Crystal structure of rat carnitine palmitoyltransferase II

Hsiao, Y.S., Jogl, G., Esser, V., Tong, L.

(2006) Biochem Biophys Res Commun 346: 974-980

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)
Unique Ligands	D12

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2J1N \| pdb_00002j1n	Download File View File

osmoporin OmpC

Basle, A., Storici, P., Rummel, G., Rosenbusch, J.P., Schirmer, T.

(2006) J Mol Biology 362: 933

Released	2006-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE PROTEIN C (protein)
Unique Ligands	CL, D12, MG

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2JIY \| pdb_00002jiy	Download File View File

PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ALA M149 REPLACED WITH TRP (CHAIN M, AM149W)

Fyfe, P.K., Potter, J.A., Cheng, J., Williams, C.M., Watson, A.J., Jones, M.R.

(2007) Biochemistry 46: 10461

Released	2007-09-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, CDL, CL, D12, FE, LDA, PO4, SPN, U10

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2XE5 \| pdb_00002xe5	Download File View File

Molecular insights into clinically isolated OmpC mutants and their role in multi-drug resistance (OmpC26)

Bamford, V.A., Naismith, J.H.

(2011) PLoS One 6: 25825

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE PORIN C (protein)
Unique Ligands	ASZ, C8E, D10, D12, HEX, HP6, OCT, OES, SO4

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2YNK \| pdb_00002ynk	Download File View File

Wzi, an Outer Membrane Protein Involved in Group 1 Capsule Assembly in Escherichia coli, is a Carbohydrate Binding Beta-Barrel

Bushell, S.R., Mainprize, I.L., Wear, M.A., Lou, H., Kong, L., Davis, B., Bayley, H., Whitfield, C., Naismith, J.H.

(2013) Structure 21: 844

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Escherichia coli
Macromolecule	WZI (protein)
Unique Ligands	D12, HEX, OCT

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3ARB \| pdb_00003arb	Download File View File

Ternary crystal structure of the NKT TCR-CD1d-alpha-galactosylceramide analogue-OCH

Wun, K.S., Rossjohn, J.

(2011) Immunity 34: 327-339

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) NKT Valpha14-Jalpha18,NKT Valpha14-Jalpha18 (protein) NKT Vbeta8.2,NKT Vbeta8.2 (protein)
Unique Ligands	D12, FEE, NAG, PEG
Unique branched monosaccharides	NAG

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3HAP \| pdb_00003hap	Download File View File

Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles

Joh, N.H., Yang, D., Bowie, J.U.

(2009) J Am Chem Soc 131: 10846-10847

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	CPS, D10, D12, DD9, HP6, R16, RET

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3HAQ \| pdb_00003haq	Download File View File

Crystal structure of bacteriorhodopsin mutant I148A crystallized from bicelles

Joh, N.H., Yang, D., Bowie, J.U.

(2009) J Am Chem Soc 131: 10846-10847

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	CPS, D10, D12, DD9, HP6, R16, RET

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3HAS \| pdb_00003has	Download File View File

Crystal structure of bacteriorhodopsin mutant L152A crystallized from bicelles

Joh, N.H., Yang, D., Bowie, J.U.

(2009) J Am Chem Soc 131: 10846-10847

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	CPS, D10, D12, HP6, OCT, R16, RET

Explore in 3D

3OV6 \| pdb_00003ov6	Download File View File

CD1c in complex with MPM (mannosyl-beta1-phosphomycoketide)

Scharf, L., Li, N.S., Hawk, A.J., Garzon, D., Zhang, T., Kazen, A.R., Shah, S., Haddadian, E.J., Saghatelian, A., Faraldo-Gomez, J.D., Meredith, S.C., Piccirilli, J.A., Adams, E.J.

(2010) Immunity 33: 853-862

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.502 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin, T-cell surface glycoprotein CD1c, T-cell surface glycoprotein CD1b (protein)
Unique Ligands	D12, MK0, NAG

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3R9B \| pdb_00003r9b	Download File View File

Crystal structure of Mycobacterium smegmatis CYP164A2 in ligand free state

Agnew, C.R.J., Warrilow, A.G.S., Kelly, S.L., Brady, R.L.

(2012) Antimicrob Agents Chemother 56: 391-402

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	CYTOCHROME P450 164A2 (protein)
Unique Ligands	D12, EDO, HEM, K, NA, PO4

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3TZV \| pdb_00003tzv	Download File View File

Crystal structure of an iNKT TCR in complex with CD1d-lysophosphatidylcholine

Lopez-Sagaseta, J., Adams, E.J.

(2012) EMBO J 31: 2047-2059

Released	2012-04-25
Method	X-RAY DIFFRACTION 3.056 Å
Organisms	Homo sapiens
Macromolecule	Antigen-presenting glycoprotein CD1d (protein) Beta-2-microglobulin (protein) Invariant Natural Killer T Cell Receptor chain A (protein) Invariant Natural Killer T Cell Receptor chain B (protein)
Unique Ligands	D12, GOL, HEX, LSC
Unique branched monosaccharides	FUC, NAG

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3UTX \| pdb_00003utx	Download File View File

Crystal structure of bacteriorhodopsin mutant T46A

Cao, Z., Bowie, J.U.

(2012) Proc Natl Acad Sci U S A 109: 8121-8126

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	D12, RET

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3UTY \| pdb_00003uty	Download File View File

Crystal structure of bacteriorhodopsin mutant P50A/T46A

Cao, Z., Bowie, J.U.

(2012) Proc Natl Acad Sci U S A 109: 8121-8126

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	D12, RET

Explore in 3D

4DX5 \| pdb_00004dx5	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	C14, D10, D12, DD9, GOL, HEX, LMT, LMU, MIY, OCT, SO4, UND

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4DX7 \| pdb_00004dx7	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.253 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	D10, D12, DM2, GOL, HEX, LMT, LMU

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4JRB \| pdb_00004jrb	Download File View File

Structure of Cockroach Allergen Bla g 1 Tandem Repeat as a EGFP fusion

Mueller, G.A., Pedersen, L.C., Lih, F.B., Glesner, J., Moon, A.F., Chapman, M.D., Tomer, K., London, R.E.

(2013) J Allergy Clin Immunol 132: 1420-1426.e9

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.414 Å
Organisms	Aequorea victoria Blattella germanica
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	CL, D12, PGT

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4Y9H \| pdb_00004y9h	Download File View File

The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles

Saiki, H., Sugiyama, S., Kakinouchi, K., Kawatake, S., Hanashima, S., Matsumori, N., Murata, M.

To be published

Released	2016-02-17
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Halobacterium salinarum R1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	D10, D12, DD9, HP6, PO4, R16, RET

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5AWZ \| pdb_00005awz	Download File View File

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.57 angstrom

Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2203-2216

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Acetabularia acetabulum
Macromolecule	Rhodopsin I (protein)
Unique Ligands	C14, D10, D12, OCT, OLB, RET

1 to 25 of 172 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1GKA | pdb_00001gka

1GZP | pdb_00001gzp

1GZQ | pdb_00001gzq

1OSM | pdb_00001osm

1TI1 | pdb_00001ti1

1XJI | pdb_00001xji

2H4T | pdb_00002h4t

2J1N | pdb_00002j1n

2JIY | pdb_00002jiy

2XE5 | pdb_00002xe5

2YNK | pdb_00002ynk

3ARB | pdb_00003arb

3HAP | pdb_00003hap

3HAQ | pdb_00003haq

3HAS | pdb_00003has

3OV6 | pdb_00003ov6

3R9B | pdb_00003r9b

3TZV | pdb_00003tzv

3UTX | pdb_00003utx

3UTY | pdb_00003uty

4DX5 | pdb_00004dx5

4DX7 | pdb_00004dx7

4JRB | pdb_00004jrb

4Y9H | pdb_00004y9h

5AWZ | pdb_00005awz