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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Narayana, S.V.L."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (9)
	Streptococcus agalactiae serogroup V (9)
	Sus scrofa (6)
	Staphylococcus aureus (4)
	Staphylococcus epidermidis ATCC 12228 (4)
	Staphylococcus epidermidis (2)
	Actinomyces naeslundii (1)
	Enterococcus faecalis (1)
	Naja kaouthia (1)
	Staphylococcus aureus subsp. aureus N315 (1)

More...

Taxonomy

	Bacteria (24)
	Eukaryota (16)

Experimental Method

X-RAY DIFFRACTION (40)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (12)
	2.0 - 2.5 (20)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (10)
	2005 - 2009 (5)
	2010 - 2014 (12)
	2015 - 2019 (5)

Enzyme Classification Name

	Hydrolases (12)
	Isomerases (1)

Symmetry Type

	Asymmetric (30)
	Cyclic (10)

SCOP Classification

	All beta proteins (19)
	All alpha proteins (6)
	Alpha and beta proteins (a/b) (2)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 40 Structures

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1ALV \| pdb_00001alv	Download File View File

CALCIUM BOUND DOMAIN VI OF PORCINE CALPAIN

Narayana, S.V.L., Lin, G., Chattopadhyay, D., Maki, M.

(1997) Nat Struct Biol 4: 539-547

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sus scrofa
Macromolecule	CALPAIN (protein)
Unique Ligands	CA

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1ALW \| pdb_00001alw	Download File View File

INHIBITOR AND CALCIUM BOUND DOMAIN VI OF PORCINE CALPAIN

Narayana, S.V.L., Lin, G.

(1997) Nat Struct Biol 4: 539-547

Released	1998-06-10
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Sus scrofa
Macromolecule	CALPAIN (protein)
Unique Ligands	CA, ISA

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1BIO \| pdb_00001bio	Download File View File

HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)
Unique Ligands	GOL, SOA

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1C9H \| pdb_00001c9h	Download File View File

CRYSTAL STRUCTURE OF FKBP12.6 IN COMPLEX WITH RAPAMYCIN

Deivanayagam, C.C.S., Carson, M., Thotakura, A., Narayana, S.V.L., Chodavarapu, C.S.

(2000) Acta Crystallogr D Biol Crystallogr 56: 266-271

Released	2000-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FKBP12.6 (protein)
Unique Ligands	RAP

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1D2O \| pdb_00001d2o	Download File View File

CRYSTAL STRUCTURE OF A SINGLE B REPEAT UNIT (B1) OF COLLAGEN BINDING SURFACE PROTEIN (CNA) OF STAPHYLOCOCCUS AUREUS.

Deivanayagam, C.C.S., Rich, R.L., Hook, M., Narayana, S.V.L.

(2000) Structure 8: 67-78

Released	2000-09-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	COLLAGEN ADHESIN (protein)

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1D2P \| pdb_00001d2p	Download File View File

CRYSTAL STRUCTURE OF TWO B REPEAT UNITS (B1B2) OF THE COLLAGEN BINDING PROTEIN (CNA) OF STAPHYLOCOCCUS AUREUS

Deivanayagam, C.C.S., Rich, R.L., Hook, M., Narayana, S.V.L.

(2000) Structure 8: 67-78

Released	2000-09-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus
Macromolecule	COLLAGEN ADHESIN (protein)

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1DFP \| pdb_00001dfp	Download File View File

FACTOR D INHIBITED BY DIISOPROPYL FLUOROPHOSPHATE

Cole, L.B., Chu, N., Kilpatrick, J.M., Volanakis, J.E., Narayana, S.V.L., Babu, Y.S.

(1997) Acta Crystallogr D Biol Crystallogr 53: 143-150

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)
Unique Ligands	DFP

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1DST \| pdb_00001dst	Download File View File

MUTANT OF FACTOR D WITH ENHANCED CATALYTIC ACTIVITY

Narayana, S.V.L., Volanakis, J.E.

(1995) J Biological Chem 270: 24399-24405

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)

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1DSU \| pdb_00001dsu	Download File View File

HUMAN FACTOR D, COMPLEMENT ACTIVATING ENZYME

Narayana, S.V.L., Volanakis, J.E., Delucas, L.J.

(1994) J Mol Biology 235: 695-708

Released	1996-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)

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1FDP \| pdb_00001fdp	Download File View File

PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D

Jing, H., Macon, K.J., Moore, D., Delucas, L.J., Volanakis, J.E., Narayana, S.V.L.

(1999) EMBO J 18: 804-814

Released	1999-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROENZYME OF COMPLEMENT FACTOR D (protein)

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1HFD \| pdb_00001hfd	Download File View File

HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)

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1N67 \| pdb_00001n67	Download File View File

Clumping Factor A from Staphylococcus aureus

Deivanayagam, C.C.S., Wann, E.R., Chen, W., Carson, M., Rajashankar, K.R., Hook, M., Narayana, S.V.L.

(2002) EMBO J 21: 6660-6672

Released	2003-03-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	Clumping Factor (protein)
Unique Ligands	MG

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1NX0 \| pdb_00001nx0	Download File View File

Structure of Calpain Domain 6 in Complex with Calpastatin DIC

Todd, B., Moore, D., Deivanayagam, C.C.S., Lin, G.-D., Chattopadhyay, D., Maki, M., Wang, K.K.W., Narayana, S.V.L.

(2003) J Mol Biology 328: 131-146

Released	2003-08-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sus scrofa
Macromolecule	Calcium-dependent protease, small subunit (protein) Calpastatin (protein) Small molecule inhibitor (protein)
Unique Ligands	CA

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1NX1 \| pdb_00001nx1	Download File View File

Calpain Domain VI Complexed with Calpastatin Inhibitory Domain C (DIC)

Todd, B., Moore, D., Deivanayagam, C.C.S., Lin, G.-D., Chattopadhyay, D., Maki, M., Wang, K.K.W., Narayana, S.V.L.

(2003) J Mol Biology 328: 131-146

Released	2003-08-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	Calcium-dependent protease, small subunit (protein) Calpastatin (protein)
Unique Ligands	CA

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1NX2 \| pdb_00001nx2	Download File View File

Calpain Domain VI

Todd, B., Moore, D., Deivanayagam, C.C.S., Lin, G.-D., Chattopadhyay, D., Maki, M., Wang, K.K.W., Narayana, S.V.L.

(2003) J Mol Biology 328: 131-146

Released	2003-08-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sus scrofa
Macromolecule	Calcium-dependent protease, small subunit (protein)
Unique Ligands	CA

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1NX3 \| pdb_00001nx3	Download File View File

Calpain Domain VI in Complex with the Inhibitor PD150606

Todd, B., Moore, D., Deivanayagam, C.C.S., Lin, G.-D., Chattopadhyay, D., Maki, M., Wang, K.K.W., Narayana, S.V.L.

(2003) J Mol Biology 328: 131-146

Released	2003-08-19
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Sus scrofa
Macromolecule	Calcium-dependent protease, small subunit (protein)
Unique Ligands	CA, ISA

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1R17 \| pdb_00001r17	Download File View File

Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (adhesin-ligand complex)

Ponnuraj, K., Bowden, M.G., Davis, S., Gurusiddappa, S., Moore, D., Choe, D., Xu, Y., Hook, M., Narayana, S.V.L.

(2003) Cell 115: 217-228

Released	2003-10-28
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Staphylococcus epidermidis
Macromolecule	fibrinogen-binding protein SdrG (protein) fibrinopeptide B (protein)
Unique Ligands	CA

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1R19 \| pdb_00001r19	Download File View File

Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (Apo structure)

Ponnuraj, K., Bowden, M.G., Davis, S., Gurusiddappa, S., Moore, D., Choe, D., Xu, Y., Hook, M., Narayana, S.V.L.

(2003) Cell 115: 217-228

Released	2003-10-28
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Staphylococcus epidermidis
Macromolecule	fibrinogen-binding protein SdrG (protein)

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2F68 \| pdb_00002f68	Download File View File

Crystal structure of collagen adhesin (CNA) from S. aureus

Zong, Y., Narayana, S.V.L.

(2005) EMBO J 24: 4224-4236

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Staphylococcus aureus
Macromolecule	Collagen adhesin (protein)

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2ODP \| pdb_00002odp	Download File View File

Complement component C2a, the catalytic fragment of C3- and C5-convertase of human complement

Narayana, S.V.L., Krishnan, V.

(2007) J Mol Biology 367: 224-233

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Complement C2 (protein)
Unique Ligands	MG, NAG
Unique branched monosaccharides	NAG

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2ODQ \| pdb_00002odq	Download File View File

Complement component C2a, the catalytic fragment of C3- and C5-convertase of human complement

Narayana, S.V.L., Krishnan, V.

(2007) J Mol Biology 367: 224-233

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Complement C2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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2OKM \| pdb_00002okm	Download File View File

Crystal structure of ACE19, the collagen binding subdomain of Enterococcus faecalis surface protein ACE

Ponnuraj, K., Narayana, S.V.L.

(2007) Proteins 69: 199-203

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Enterococcus faecalis
Macromolecule	Collagen adhesin (protein)
Unique Ligands	SO4

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3AU0 \| pdb_00003au0	Download File View File

Structural and biochemical characterization of ClfB:ligand interactions

Ganesh, V.K., Barbu, E.M., Deivanayagam, C.C.S., Le, B., Anderson, A.S., Matsuka, Y., Lin, S.L., Foster, T.F., Narayana, S.V.L., Hook, M.

To be published

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	Clumping factor B (protein)
Unique Ligands	MG

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3FRP \| pdb_00003frp	Download File View File

Crystal Structure of Cobra Venom Factor, a Co-factor for C3- and C5 convertase CVFBb

Krishnan, V., Narayana, S.V.L.

(2009) Structure 17: 611-619

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Naja kaouthia
Macromolecule	Cobra venom factor alpha chain (protein) Cobra venom factor beta chain (protein) Cobra venom factor gamma chain (protein)
Unique Ligands	CA

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3PF2 \| pdb_00003pf2	Download File View File

The Crystal Structure of the Major Pilin GBS80 of Streptococcus agalactiae 35kDa C-terminal fragment

Vengadesan, K., Narayana, S.V.L.

(2011) J Mol Biology 407: 731-743

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	Cell wall surface anchor family protein (protein)
Unique Ligands	CA

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ALV | pdb_00001alv

1ALW | pdb_00001alw

1BIO | pdb_00001bio

1C9H | pdb_00001c9h

1D2O | pdb_00001d2o

1D2P | pdb_00001d2p

1DFP | pdb_00001dfp

1DST | pdb_00001dst

1DSU | pdb_00001dsu

1FDP | pdb_00001fdp

1HFD | pdb_00001hfd

1N67 | pdb_00001n67

1NX0 | pdb_00001nx0

1NX1 | pdb_00001nx1

1NX2 | pdb_00001nx2

1NX3 | pdb_00001nx3

1R17 | pdb_00001r17

1R19 | pdb_00001r19

2F68 | pdb_00002f68

2ODP | pdb_00002odp

2ODQ | pdb_00002odq

2OKM | pdb_00002okm

3AU0 | pdb_00003au0

3FRP | pdb_00003frp

3PF2 | pdb_00003pf2