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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "O'Donnell, J.P."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

Homo sapiens (16)

Taxonomy

Eukaryota (16)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (8)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (14)

Membrane Protein Annotation

	mpstruc (3)
	PDBTM (1)
	OPM (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (2)

AllSelected

1 to 16 of 16 Structures

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4IDN \| pdb_00004idn	Download File View File

Human atlastin-1 1-446, C-his6, GppNHp

Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., O'Donnell, J.P., Zipfel, W.R., Sondermann, H.

(2013) EMBO J 32: 369-384

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.252 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GNP, MG

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4IDO \| pdb_00004ido	Download File View File

human atlastin-1 1-446, C-his6, GDPAlF4-

Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., O'Donnell, J.P., Zipfel, W.R., Sondermann, H.

(2013) EMBO J 32: 369-384

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.091 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	ALF, GDP, MG

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4IDP \| pdb_00004idp	Download File View File

human atlastin-1 1-446, N440T, GppNHp

Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., O'Donnell, J.P., Zipfel, W.R., Sondermann, H.

(2013) EMBO J 32: 369-384

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.587 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GNP, MG

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4IDQ \| pdb_00004idq	Download File View File

human atlastin-1 1-446, N440T, GDPAlF4-

Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., O'Donnell, J.P., Zipfel, W.R., Sondermann, H.

(2013) EMBO J 32: 369-384

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	ALF, GDP, MG, P6G

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5VGR \| pdb_00005vgr	Download File View File

Human Atlastin-3, GDP-bound

O'Donnell, J.P., Sondermann, H.

(2017) Structure 25: 997-1010.e4

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.096 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-3 (protein)
Unique Ligands	GDP

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6B1I \| pdb_00006b1i	Download File View File

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

O'Donnell, J.P.

(2018) Biochemistry 57: 1073-1086

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein family A (Hsp70) member 8 (protein)
Unique Ligands	ADP, GOL, MG, PO4

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6B1M \| pdb_00006b1m	Download File View File

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

O'Donnell, J.P.

(2018) Biochemistry 57: 1073-1086

Released	2018-01-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein family A (Hsp70) member 8 (protein)
Unique Ligands	ANP, GOL, MG

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6B1N \| pdb_00006b1n	Download File View File

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

O'Donnell, J.P.

(2018) Biochemistry 57: 1073-1086

Released	2018-01-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein family A (Hsp70) member 8 (protein)
Unique Ligands	ADP, GOL, MG

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6B9D \| pdb_00006b9d	Download File View File

Human ATL1 mutant - R77A bound to GDP

O'Donnell, J.P., Sondermann, H.

(2018) J Biological Chem 293: 687-700

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GDP, GOL, MG

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6B9E \| pdb_00006b9e	Download File View File

Human ATL1 mutant - R77A / F151S bound to GDP

O'Donnell, J.P., Sondermann, H.

(2018) J Biological Chem 293: 687-700

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GDP, MG, SO4

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6B9F \| pdb_00006b9f	Download File View File

Human ATL1 mutant - F151S bound to GDPAlF4-

O'Donnell, J.P., Sondermann, H.

(2018) J Biological Chem 293: 687-700

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	ALF, GDP, GOL, MG

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6B9G \| pdb_00006b9g	Download File View File

human ATL1 GTPase domain bound to GDP

O'Donnell, J.P., Sondermann, H.

(2018) J Biological Chem 293: 687-700

Released	2017-12-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GDP, MG

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6XJN \| pdb_00006xjn	Download File View File

Human atlastin-1 (residues 1-439) bound to GDP-Mg2+ exhibits an ordered amino terminus

O'Donnell, J.P., Sondermann, H.

(2021) J Cell Biol 220:

Released	2021-06-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-1 (protein)
Unique Ligands	GDP, MG

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6XJO \| pdb_00006xjo	Download File View File

Human atlastin-3 (residues 1-334) bound to GDP-Mg2+ exhibits an ordered amino terminus

O'Donnell, J.P., Sondermann, H.

(2021) J Cell Biol 220:

Released	2021-06-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Atlastin-3 (protein)
Unique Ligands	GDP, MG

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6Y4L \| pdb_00006y4l	Download File View File

Crystal structure of human ER membrane protein complex subunits EMC2 and EMC9

Hegde, R.S., O'Donnell, J.P.

(2020) Elife 9:

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ER membrane protein complex subunit 2 (protein) ER membrane protein complex subunit 9 (protein)
Unique Ligands	EDO, PE4, PEG, SO4

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6Z3W \| pdb_00006z3w	Download File View File

Human ER membrane protein complex

Hegde, R.S., O'Donnell, J.P.

(2020) Elife 9:

Released	2020-07-15
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

1 to 16 of 16 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4IDN | pdb_00004idn

Human atlastin-1 1-446, C-his6, GppNHp

4IDO | pdb_00004ido

human atlastin-1 1-446, C-his6, GDPAlF4-

4IDP | pdb_00004idp

human atlastin-1 1-446, N440T, GppNHp

4IDQ | pdb_00004idq

human atlastin-1 1-446, N440T, GDPAlF4-

5VGR | pdb_00005vgr

Human Atlastin-3, GDP-bound

6B1I | pdb_00006b1i

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

6B1M | pdb_00006b1m

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

6B1N | pdb_00006b1n

Disrupted hydrogen bond network impairs ATPase activity in an Hsc70 cysteine mutant

6B9D | pdb_00006b9d

Human ATL1 mutant - R77A bound to GDP

6B9E | pdb_00006b9e

Human ATL1 mutant - R77A / F151S bound to GDP

6B9F | pdb_00006b9f

Human ATL1 mutant - F151S bound to GDPAlF4-

6B9G | pdb_00006b9g

human ATL1 GTPase domain bound to GDP

6XJN | pdb_00006xjn

Human atlastin-1 (residues 1-439) bound to GDP-Mg2+ exhibits an ordered amino terminus

6XJO | pdb_00006xjo

Human atlastin-3 (residues 1-334) bound to GDP-Mg2+ exhibits an ordered amino terminus

6Y4L | pdb_00006y4l

Crystal structure of human ER membrane protein complex subunits EMC2 and EMC9

6Z3W | pdb_00006z3w

Human ER membrane protein complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4IDN | pdb_00004idn

4IDO | pdb_00004ido

4IDP | pdb_00004idp

4IDQ | pdb_00004idq

5VGR | pdb_00005vgr

6B1I | pdb_00006b1i

6B1M | pdb_00006b1m

6B1N | pdb_00006b1n

6B9D | pdb_00006b9d

6B9E | pdb_00006b9e

6B9F | pdb_00006b9f

6B9G | pdb_00006b9g

6XJN | pdb_00006xjn

6XJO | pdb_00006xjo

6Y4L | pdb_00006y4l

6Z3W | pdb_00006z3w