RCSB PDB: Search

2XSL \| pdb_00002xsl	Download File View File

The crystal structure of a Thermus thermophilus tRNAGly acceptor stem microhelix at 1.6 Angstroem resolution

Oberthuer, D., Eichert, A., Erdmann, V.A., Fuerste, J.P., Betzel, C., Foerster, C.

(2011) Biochem Biophys Res Commun 404: 245

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Thermus thermophilus
Macromolecule	5'-R(CPUPCPCPCPGPC)-3' (nucleic acid) 5'-R(GPCPGPGPGPAPG)-3' (nucleic acid)

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3T62 \| pdb_00003t62	Download File View File

Crystal structure of recombinant Kunitz Type serine protease Inhibitor-1 from the Caribbean Sea anemone Stichodactyla helianthus in complex with bovine chymotrypsin

Garcia-Fernandez, R., Dominguez, R., Oberthuer, D., Pons, T., Gonzalez-Gonzalez, Y., Chavez, M.A., Betzel, C., Redecke, L.

To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus Stichodactyla helianthus
Macromolecule	Chymotrypsinogen A (protein) Kunitz-type proteinase inhibitor SHPI-1 (protein)
Unique Ligands	SO4

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3UX7 \| pdb_00003ux7	Download File View File

Crystal structure of a dimeric myotoxic component of the Vipera ammodytes meridionalis venom reveals determinants of myotoxicity and membrane damaging activity

Georgieva, D., Coronado, M., Oberthuer, D., Buck, F., Duhalov, D., Arni, R.K., Genov, N., Betzel, C.

(2012) Mol Biosyst 8: 1405-1411

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Vipera ammodytes meridionalis
Macromolecule	Ammodytin L(1) isoform (protein)
Unique Ligands	SO4

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4N4Z \| pdb_00004n4z	Download File View File

Trypanosoma brucei procathepsin B structure solved by Serial Microcrystallography using synchrotron radiation

Gati, C., Bourenkov, G., Klinge, M., Rehders, D., Stellato, F., Oberthuer, D., White, T.A., Yevanov, O., Sommer, B.P., Mogk, S., Duszenko, M., Betzel, C., Schneider, T.R., Chapman, H.N., Redecke, L.

(2014) IUCrJ 1: 87-94

Released	2014-02-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Cysteine peptidase C (CPC) (protein)
Unique branched monosaccharides	BMA, NAG

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4O34 \| pdb_00004o34	Download File View File

Room temperature macromolecular serial crystallography using synchrotron radiation

Stellato, F., Oberthuer, D., Liang, M., Bean, R., Gati, C., Yefanov, O., Barty, A., Burkhardt, A., Fischer, P., Galli, L., Kirian, R.A., Mayer, J., Pannerselvam, S., Yoon, C.H., Chervinskii, F., Speller, E., White, T.A., Betzel, C., Meents, A., Chapman, H.N.

(2014) IUCrJ 1: 204-212

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4R8I \| pdb_00004r8i	Download File View File

High Resolution Structure of a Mirror-Image RNA Oligonucleotide Aptamer in Complex with the Chemokine CCL2

Oberthuer, D., Achenbach, J., Gabdulkhakov, A., Falke, S., Buchner, K., Maasch, C., Rehders, D., Klussmann, S., Betzel, C.

(2015) Nat Commun 6: 6923-6923

Released	2015-04-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	C-C motif chemokine 2 (protein) Mirror-Image RNA Oligonucleotide Aptamer NOXE36 (nucleic acid)
Unique Ligands	K, NA, SR

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4RWA \| pdb_00004rwa	Download File View File

Synchrotron structure of the human delta opioid receptor in complex with a bifunctional peptide (PSI community target)

Fenalti, G., Zatsepin, N.A., Betti, C., Giguere, P., Han, G.W., Ishchenko, A., Liu, W., Guillemyn, K., Zhang, H., James, D., Wang, D., Weierstall, U., Spence, J.C.H., Boutet, S., Messerschmidt, M., Williams, G.J., Gati, C., Yefanov, O.M., White, T.A., Oberthuer, D., Metz, M., Yoon, C.H., Barty, A., Chapman, H.N., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Fromme, P., Tourwe, D., Schiller, P.W., Roth, B.L., Ballet, S., Katritch, V., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2015) Nat Struct Mol Biol 22: 265-268

Released	2015-01-14
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Escherichia coli Homo sapiens synthetic construct
Macromolecule	Soluble cytochrome b562,Delta-type opioid receptor (protein) bifunctional peptide (protein)
Unique Ligands	OLC

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4RWD \| pdb_00004rwd	Download File View File

XFEL structure of the human delta opioid receptor in complex with a bifunctional peptide

Fenalti, G., Zatsepin, N.A., Betti, C., Giguere, P., Han, G.W., Ishchenko, A., Liu, W., Guillemyn, K., Zhang, H., James, D., Wang, D., Weierstall, U., Spence, J.C.H., Boutet, S., Messerschmidt, M., Williams, G.J., Gati, C., Yefanov, O.M., White, T.A., Oberthuer, D., Metz, M., Yoon, C.H., Barty, A., Chapman, H.N., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Fromme, P., Tourwe, D., Schiller, P.W., Roth, B.L., Ballet, S., Katritch, V., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

(2015) Nat Struct Mol Biol 22: 265-268

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Homo sapiens synthetic construct
Macromolecule	Soluble cytochrome b562,Delta-type opioid receptor (protein) bifunctional peptide (protein)
Unique Ligands	NA, OLA, OLC

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4X31 \| pdb_00004x31	Download File View File

Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation

Nogly, P., James, D., Wang, D., White, T., Zatsepin, N., Shilova, A., Nelson, G., Liu, H., Johansson, L., Heymann, M., Jaeger, K., Metz, M., Wickstrand, C., Wu, W., Baath, P., Berntsen, P., Oberthuer, D., Panneels, V., Cherezov, V., Chapman, H., Spence, J., Schertler, G., Neutze, R., Moraes, I., Burghammer, M., Standfuss, J., Weierstall, U.

(2015) IUCrJ 2: 168-176

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, RET

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5CM5 \| pdb_00005cm5	Download File View File

Structure of Hydroxyethylthiazole Kinase ThiM from Staphylococcus aureus

Drebes, J., Kuenz, M., Eberle, R.J., Oberthuer, D., Cang, H., Wrenger, C., Betzel, C.

(2016) Sci Rep 6: 22871-22871

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	Hydroxyethylthiazole kinase (protein)

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5COJ \| pdb_00005coj	Download File View File

Structure of Hydroxyethylthiazole kinase ThiM from Staphylococcus aureus in complex with native substrate 2-(4-methyl-1,3-thiazol-5-yl)ethanol.

Drebes, J., Kuenz, M., Eberle, R.J., Oberthuer, D., Cang, H., Wrenger, C., Betzel, C.

(2016) Sci Rep 6: 22871-22871

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	Hydroxyethylthiazole kinase (protein)
Unique Ligands	MG, TZE

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5E7C \| pdb_00005e7c	Download File View File

Macromolecular diffractive imaging using imperfect crystals - Bragg data

Ayyer, K., Yefanov, O., Oberthuer, D., Roy-Chowdhury, S., Galli, L., Mariani, V., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Schaffner, A., Doerner, K., James, D., Kupitz, C., Metz, M., Nelson, G., Xavier, P.L., Beyerlein, K.R., Schmidt, M., Sarrou, I., Spence, J.C.H., Weierstall, U., White, T.A., Yang, J.-H., Zhao, Y., Liang, M., Aquila, A., Hunter, M.S., Robinson, J.S., Koglin, J.E., Boutet, S., Fromme, P., Barty, A., Chapman, H.N.

(2016) Nature 530: 202-206

Released	2016-02-10
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, FE2, HEM, LHG, LMG, MG, OEX, PHO, PL9, SQD

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5MJG \| pdb_00005mjg	Download File View File

Single-shot pink beam serial crystallography: Thaumatin

Meents, A., Oberthuer, D., Lieske, J., Srajer, V.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	NA, SRT

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5MJJ \| pdb_00005mjj	Download File View File

Single-shot pink beam serial crystallography: Lysozyme

Meents, A., Oberthuer, D., Lieske, J., Srajer, V.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.75009201311 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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5MJL \| pdb_00005mjl	Download File View File

Single-shot pink beam serial crystallography: Proteinase K

Meents, A., Oberthuer, D., Lieske, J., Srajer, V.

(2017) Nat Commun 8: 1281-1281

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.21013789926 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA, CL, EPE, NHE

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5MJM \| pdb_00005mjm	Download File View File

Single-shot pink beam serial crystallography: Phycocyanin (Five chips merged)

Meents, A., Oberthuer, D., Lieske, J., Srajer, V., Sarrou, I.

(2017) Nat Commun 8: 1281-1281

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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5MJP \| pdb_00005mjp	Download File View File

Multi-bunch pink beam serial crystallography: Phycocyanin (One chip)

Meents, A., Oberthuer, D., Lieske, J., Srajer, V., Sarrou, I.

(2017) Nat Commun 8: 1281-1281

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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5MJQ \| pdb_00005mjq	Download File View File

Single-shot pink beam serial crystallography: Phycocyanin (One chip)

Meents, A., Oberthuer, D., Lieske, J., Srajer, V., Sarrou, I.

(2017) Nat Commun 8: 1281-1281

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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5MND \| pdb_00005mnd	Download File View File

SFX structure of Cydia pomonella granulovirus using a double flow-focusing nozzle

Oberthuer, D., Chapman, H., Doerner, K., Xavier, P.L.

(2017) Sci Rep 7: 44628-44628

Released	2017-03-29
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Cydia pomonella granulosis virus (isolate Mexican)
Macromolecule	Granulin (protein)

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5NJP \| pdb_00005njp	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 1HEW

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJQ \| pdb_00005njq	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 4ET8

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJR \| pdb_00005njr	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 4ET8

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJS \| pdb_00005njs	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 1HEW

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5O7M \| pdb_00005o7m	Download File View File

Single-shot pink beam serial crystallography: Phycocyanin (One chip, chip_1)

Meents, A., Oberthuer, D., Lieske, J., Srajer, V., Sarrou, I.

(2017) Nat Commun 8: 1281-1281

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	CYC

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5TRX \| pdb_00005trx	Download File View File

Room temperature structure of an extradiol ring-cleaving dioxygenase from B.fuscum determined using serial femtosecond crystallography

Kovaleva, E.G., Oberthuer, D., Tolstikova, A., Mariani, V.

(2017) Sci Rep 7: 44628

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Brevibacterium fuscum
Macromolecule	Homoprotocatechuate 2,3-dioxygenase (protein)
Unique Ligands	CA, CL, FE2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2XSL | pdb_00002xsl

3T62 | pdb_00003t62

3UX7 | pdb_00003ux7

4N4Z | pdb_00004n4z

4O34 | pdb_00004o34

4R8I | pdb_00004r8i

4RWA | pdb_00004rwa

4RWD | pdb_00004rwd

4X31 | pdb_00004x31

5CM5 | pdb_00005cm5

5COJ | pdb_00005coj

5E7C | pdb_00005e7c

5MJG | pdb_00005mjg

5MJJ | pdb_00005mjj

5MJL | pdb_00005mjl

5MJM | pdb_00005mjm

5MJP | pdb_00005mjp

5MJQ | pdb_00005mjq

5MND | pdb_00005mnd

5NJP | pdb_00005njp

5NJQ | pdb_00005njq

5NJR | pdb_00005njr

5NJS | pdb_00005njs

5O7M | pdb_00005o7m

5TRX | pdb_00005trx