QUERY: Structure Author = "Ohki, M."
MyPDB Login
 Search API
Advanced Search Query Builder
Full Text
Structure Attributes
NOT
Count
Add Subquery
Chemical Attributes
Sequence Similarity
Sequence Motif
Structure Similarity
Structure Motif
Chemical Similarity
Return
grouped by
Include Computed Structure Models (CSM)
Count
Clear
Search
Search Summary This query matches 18 Structures.
Refinements
Structure Determination Methodology
Scientific Name of Source Organism
Taxonomy
Experimental Method
Polymer Entity Type
Refinement Resolution (Å)
Release Date
Enzyme Classification Name
Symmetry Type
SCOP Classification
1 to 18 of 18 Structures
Page 1 of 1
Sort by
Gallery item
 Explore in 3D

3AJR: Entity 1

Download FileView File

Crystal structure of L-3-Hydroxynorvaline bound L-Threonine dehydrogenase (Y137F) from Hyperthermophilic Archaeon Thermoplasma volcanium

Yoneda, K., Sakuraba, H., Ohshima, T.

(2012) J Biological Chem 287: 12966-12974

Released2011-06-15
Method
X-RAY DIFFRACTION 1.77 Å
Chain IDsA, B
Organism
MacromoleculeNDP-sugar epimerase
Gallery item
 Explore in 3D

3C8M: Entity 1

Download FileView File

Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium

Osipiuk, J., Hendricks, R., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released2008-02-19
Method
X-RAY DIFFRACTION 1.9 Å
Chain IDA
Organism
MacromoleculeHomoserine dehydrogenase
Gallery item
 Explore in 3D

3GK5: Entity 1

Download FileView File

Crystal structure of rhodanese-related protein (TVG0868615) from Thermoplasma volcanium, Northeast Structural Genomics Consortium Target TvR109A

Forouhar, F., Su, M., Seetharaman, J., Mao, L., Xiao, R., Foote, E.L., Ciccosanti, C., Belote, R.L., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released2009-03-24
Method
X-RAY DIFFRACTION 2.4 Å
Chain IDA
Organism
MacromoleculeUncharacterized rhodanese-related protein TVG0868615
Gallery item
 Explore in 3D

3GLV: Entity 1

Download FileView File

Crystal structure of the lipopolysaccharide core biosynthesis protein from Thermoplasma volcanium GSS1

Zhang, R., Sather, A., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released2009-05-12
Method
X-RAY DIFFRACTION 1.99 Å
Chain IDsA, B
Organism
MacromoleculeLipopolysaccharide core biosynthesis protein
Gallery item
 Explore in 3D

3LFK: Entity 1

Download FileView File

A reported archaeal mechanosensitive channel is a structural homolog of MarR-like transcriptional regulators

Liu, Z., Walton, T.A., Rees, D.C.

(2010) Protein Sci 19: 808-814

Released2010-04-14
Method
X-RAY DIFFRACTION 1.6 Å
Chain IDsA, B, C, D
Organism
MacromoleculeMarR Like Protein, TVG0766549
Gallery item
 Explore in 3D

3NAG: Entity 1

Download FileView File

Crystal structure of the phosphoribosylpyrophosphate (PRPP) synthetase from Thermoplasma Volcanium in complex with ADP

Cherney, M.M., Cherney, L.T., Garen, C.R., James, M.N.G.

(2011) J Mol Biology 413: 844-856

Released2011-06-08
Method
X-RAY DIFFRACTION 1.75 Å
Chain IDsA, B
Organism
MacromoleculeRibose-phosphate pyrophosphokinase
Gallery item
 Explore in 3D

3OJ0: Entity 1

Download FileView File

Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain)

Michalska, K., Marshall, N., Clancy, S., Puttagunta, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released2010-09-01
Method
X-RAY DIFFRACTION 1.648 Å
Chain IDA
Organism
MacromoleculeGlutamyl-tRNA reductase
Gallery item
 Explore in 3D

3PZL: Entity 1

Download FileView File

The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium

Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released2011-01-19
Method
X-RAY DIFFRACTION 2.7 Å
Chain IDsA, B, C
Organism
MacromoleculeAgmatine ureohydrolase
Gallery item
 Explore in 3D

3VTZ: Entity 1

Download FileView File

Structure of Thermoplasma volcanium aldohexose dehydrogenase

Yasutake, Y., Nishioka, T., Tamura, T.

To be published

Released2012-07-18
Method
X-RAY DIFFRACTION 2.3 Å
Chain IDsA, B, C, D
Organism
MacromoleculeGlucose 1-dehydrogenase
Gallery item
 Explore in 3D

3WIC: Entity 1

Download FileView File

Structure of a substrate/cofactor-unbound glucose dehydrogenase

Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1271-1280

Released2014-05-14
Method
X-RAY DIFFRACTION 2.6 Å
Chain IDsA, B, C, D
Organism
MacromoleculeGlucose 1-dehydrogenase
Gallery item
 Explore in 3D

3WID: Entity 1

Download FileView File

Structure of a glucose dehydrogenase T277F mutant in complex with NADP

Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1271-1280

Released2014-05-14
Method
X-RAY DIFFRACTION 2.25 Å
Chain IDsA, B, C, D
Organism
MacromoleculeGlucose 1-dehydrogenase
Gallery item
 Explore in 3D

3WIE: Entity 1

Download FileView File

Structure of a glucose dehydrogenase T277F mutant in complex with D-glucose and NAADP

Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1271-1280

Released2014-05-14
Method
X-RAY DIFFRACTION 2.33 Å
Chain IDsA, B, C, D
Organism
MacromoleculeGlucose 1-dehydrogenase
Gallery item
 Explore in 3D

4JYL: Entity 1

Download FileView File

Crystal structure of enoyl-CoA hydratase from Thermoplasma volcanium GSS1

Shabalin, I.G., Cooper, D.R., Majorek, K.A., Mikolajczak, K., Porebski, P.J., Stead, M., Hillerich, B.S., Ahmed, M., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released2013-04-17
Method
X-RAY DIFFRACTION 2.37 Å
Chain IDsA, B, C, D, E
Organism
MacromoleculeEnoyl-CoA hydratase
Gallery item
 Explore in 3D

4O1S: Entity 1

Download FileView File

Crystal structure of TvoVMA intein

Aranko, A.S., Oeemig, J.S., Zhou, D., Kajander, T., Wlodawer, A., Iwai, H.

(2014) Mol Biosyst 10: 1023-1034

Released2014-03-19
Method
X-RAY DIFFRACTION 2.7008 Å
Chain IDsA, B
Organism
MacromoleculeV-type ATP synthase alpha chain
Gallery item
 Explore in 3D

4PV6: Entity 1

Download FileView File

Crystal Structure Analysis of Ard1 from Thermoplasma volcanium

Ma, C., Lee, S.J., Lee, B.J.

(2014) Biochim Biophys Acta 1844: 1790-1797

Released2015-01-21
Method
X-RAY DIFFRACTION 3.32 Å
Chain IDsA [auth C], B [auth D], C [auth G], D [auth I], E [auth K]
More (16)
Organism
MacromoleculeN-terminal acetyltransferase complex subunit [ARD1]
Gallery item
 Explore in 3D

4Z9E: Entity 1

Download FileView File

Alba from Thermoplasma volcanium

Ma, C., Lee, S.J., Pathak, C., Lee, B.J.

(2016) Arch Biochem Biophys 590: 90-100

Released2016-02-24
Method
X-RAY DIFFRACTION 2.49 Å
Chain IDsA, B, C, D
Organism
MacromoleculeDNA/RNA-binding protein Alba
Gallery item
 Explore in 3D

6AE2: Entity 1

Download FileView File

Crystal structure of Csm3 of the type III-A CRISPR-Cas effector complex

Numata, T.

(2019) J Mol Biology 431: 748-763

Released2019-01-23
Method
X-RAY DIFFRACTION 2.701 Å
Chain IDsA, B
Organism
MacromoleculeCsm3
Gallery item
 Explore in 3D

6NKE: Entity 1

Download FileView File

Wild-type GGGPS from Thermoplasma volcanium

Blank, P.N., Alderfer, K.E., Gillott, B.N., Christianson, D.W., Himmelberger, J.A.

(2020) Acta Crystallogr D Struct Biol 76: 542-557

Released2019-01-23
Method
X-RAY DIFFRACTION 1.72 Å
Chain IDA
Organism
MacromoleculeGeranylgeranylglyceryl phosphate synthase
1 to 18 of 18 Structures
Page 1 of 1
Sort by