RCSB PDB: Search

4BGN \| pdb_00004bgn	Download File View File

cryo-EM structure of the NavCt voltage-gated sodium channel

Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., Mcmillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y., Li, X.D.

(2013) J Mol Biology 425: 4074

Released	2013-07-10
Method	ELECTRON CRYSTALLOGRAPHY 9 Å
Organisms	Caldalkalibacillus thermarum
Macromolecule	VOLTAGE-GATED SODIUM CHANNEL (protein)

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4BVN \| pdb_00004bvn	Download File View File

Ultra-thermostable beta1-adrenoceptor with cyanopindolol bound

Miller, J., Nehme, R., Warne, T., Edwards, P.C., Leslie, A.G.W., Schertler, G., Tate, C.G.

(2014) PLoS One 9: 92727

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Meleagris gallopavo
Macromolecule	BETA-1 ADRENERGIC RECEPTOR (protein)
Unique Ligands	MHA, NA, OLC, P32

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4X31 \| pdb_00004x31	Download File View File

Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation

Nogly, P., James, D., Wang, D., White, T., Zatsepin, N., Shilova, A., Nelson, G., Liu, H., Johansson, L., Heymann, M., Jaeger, K., Metz, M., Wickstrand, C., Wu, W., Baath, P., Berntsen, P., Oberthuer, D., Panneels, V., Cherezov, V., Chapman, H., Spence, J., Schertler, G., Neutze, R., Moraes, I., Burghammer, M., Standfuss, J., Weierstall, U.

(2015) IUCrJ 2: 168-176

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, RET

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5DYS \| pdb_00005dys	Download File View File

Crystal Structure of T94I rhodopsin mutant

Singhal, A., Guo, Y., Matkovic, M., Schertler, G., Deupi, X., Yan, E., Standfuss, J.

(2016) EMBO Rep 17: 1431-1440

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	ACT, BOG, PLM, RET, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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5EN0 \| pdb_00005en0	Download File View File

Crystal Structure of T94I rhodopsin mutant

Singhal, A., Guo, Y., Matkovic, M., Schertler, G., Deupi, X., Yan, E., Standfuss, J.

(2016) EMBO Rep 17: 1431-1440

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Bos taurus
Macromolecule	Guanine nucleotide-binding protein G(t) subunit alpha-3 (protein) Rhodopsin (protein)
Unique Ligands	ACT, BOG, PLM, RET, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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5J7A \| pdb_00005j7a	Download File View File

Bacteriorhodopsin ground state structure obtained with Serial Femtosecond Crystallography

Nogly, P., Panneels, V., Nelson, G., Gati, C., Kimura, T., Milne, C., Milathianaki, D., Kubo, M., Wu, W., Conrad, C., Coe, J., Bean, R., Zhao, Y., Bath, P., Dods, R., Harimoorthy, R., Beyerlein, K.R., Rheinberger, J., James, D., DePonte, D., Li, C., Sala, L., Williams, G., Hunter, M., Koglin, J.E., Berntsen, P., Nango, E., Iwata, S., Chapman, H.N., Fromme, P., Frank, M., Abela, R., Boutet, S., Barty, A., White, T.A., Weierstall, U., Spence, J., Neutze, R., Schertler, G., Standfuss, J.

(2016) Nat Commun 7: 12314-12314

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, RET

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6G7H \| pdb_00006g7h	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: resting state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7I \| pdb_00006g7i	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 49-406 fs state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7J \| pdb_00006g7j	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 457-646 fs state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7K \| pdb_00006g7k	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 10 ps state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7L \| pdb_00006g7l	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 8.3 ms state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6S0L \| pdb_00006s0l	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	A2a adenosine receptor (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S0Q \| pdb_00006s0q	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from 50,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S19 \| pdb_00006s19	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.Ch.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1D \| pdb_00006s1d	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from 20,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1E \| pdb_00006s1e	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1G \| pdb_00006s1g	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from 50,000 diffraction patterns.

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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7O8F \| pdb_00007o8f	Download File View File

NmHR dark state structure determined by serial femtosecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8G \| pdb_00007o8g	Download File View File

NmHR light state structure at 10 ps after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8H \| pdb_00007o8h	Download File View File

NmHR light state structure at 10 ns after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8I \| pdb_00007o8i	Download File View File

NmHR light state structure at 1 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8J \| pdb_00007o8j	Download File View File

NmHR light state structure at 20 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8K \| pdb_00007o8k	Download File View File

NmHR light state structure at 300 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8L \| pdb_00007o8l	Download File View File

NmHR dark state structure determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8M \| pdb_00007o8m	Download File View File

NmHR light state structure at 2.5 ms (0 - 5 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4BGN | pdb_00004bgn

4BVN | pdb_00004bvn

4X31 | pdb_00004x31

5DYS | pdb_00005dys

5EN0 | pdb_00005en0

5J7A | pdb_00005j7a

6G7H | pdb_00006g7h

6G7I | pdb_00006g7i

6G7J | pdb_00006g7j

6G7K | pdb_00006g7k

6G7L | pdb_00006g7l

6S0L | pdb_00006s0l

6S0Q | pdb_00006s0q

6S19 | pdb_00006s19

6S1D | pdb_00006s1d

6S1E | pdb_00006s1e

6S1G | pdb_00006s1g

7O8F | pdb_00007o8f

7O8G | pdb_00007o8g

7O8H | pdb_00007o8h

7O8I | pdb_00007o8i

7O8J | pdb_00007o8j

7O8K | pdb_00007o8k

7O8L | pdb_00007o8l

7O8M | pdb_00007o8m