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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Seo, H.S."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (3)
	Saccharomyces cerevisiae (2)
	Saccharomyces cerevisiae S288C (2)
	Bacillota bacterium (1)
	Streptococcus agalactiae (1)
	Streptococcus agalactiae NEM316 (1)
	Vesicular stomatitis Indiana virus (strain 85CLB South America) (1)

Taxonomy

	Eukaryota (7)
	Bacteria (3)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (10)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (10)
	Cyclic (3)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)

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1 to 10 of 10 Structures

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3F7F \| pdb_00003f7f	Download File View File

Structure of Nup120

Seo, H.S., Ma, Y., Debler, E.W., Blobel, G., Hoelz, A.

(2009) Proc Natl Acad Sci U S A 106: 14281-14286

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP120 (protein)
Unique Ligands	HG

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3H7N \| pdb_00003h7n	Download File View File

Structure of Nup120

Seo, H.S., Ma, Y., Debler, E.W., Blobel, G., Hoelz, A.

(2009) Proc Natl Acad Sci U S A 106: 14281-14286

Released	2009-08-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP120 (protein)

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4MBO \| pdb_00004mbo	Download File View File

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Seo, H.S., Seepersaud, R., Doran, K.S., Iverson, T.M., Sullam, P.M., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) J Biological Chem 288: 35982-35996

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Serine-rich Repeat Adhesion Glycoprotein (Srr1) (protein)
Unique Ligands	BME, CA, MES

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4MBR \| pdb_00004mbr	Download File View File

3.65 Angstrom Crystal Structure of Serine-rich Repeat Protein (Srr2) from Streptococcus agalactiae

(2013) J Biological Chem 288: 35982-35996

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Streptococcus agalactiae
Macromolecule	Serine-rich repeat protein 2 (protein)

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4MHC \| pdb_00004mhc	Download File View File

Crystal Structure of a Nucleoporin

Seo, H.S., Blus, B.J., Blobel, G.

(2013) Proc Natl Acad Sci U S A 110: 16450-16455

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Nucleoporin NUP157 (protein)

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4OWR \| pdb_00004owr	Download File View File

Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98

Ren, Y., Quan, B., Seo, H.S., Blobel, G.

(2014) Proc Natl Acad Sci U S A 111: 9127-9132

Released	2014-06-25
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Vesicular stomatitis Indiana virus (strain 85CLB South America)
Macromolecule	Matrix protein (protein) Nuclear pore complex protein Nup98-Nup96 (protein) mRNA export factor (protein)

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6MR4 \| pdb_00006mr4	Download File View File

Crystal structure of the Sth1 bromodomain from S.cerevisiae

Seo, H.S., Hashimoto, H., Krolak, A., Debler, E.W., Blus, B.J.

(2019) Structure 27: 1460-1468.e3

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Nuclear protein STH1/NPS1 (protein)

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6UCH \| pdb_00006uch	Download File View File

SMARCB1 nucleosome-interacting C-terminal alpha helix

Valencia, A.M., Sun, Z.Y.J., Seo, H.S., Vangos, H.S., Yeoh, Z.C., Mashtalir, N., Dhe-Paganon, S., Kadoch, C.

(2019) Cell 179: 1342-1356.e23

Released	2019-11-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (protein)

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8CUC \| pdb_00008cuc	Download File View File

Crystal structure analysis of SALL4 zinc finger domain in complex with DNA

Seo, H.S., Dhe-Paganon, S.

To be published

Released	2023-05-24
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Sal-like protein 4 (protein) DNA (5'-D(PCPGPAPAPAPTPAPTPTPAPGPC)-3') (nucleic acid) DNA (5'-D(PGPCPTPAPAPTPAPTPTPTPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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8ECM \| pdb_00008ecm	Download File View File

Crystal Structure Analysis of Acetyl-CoA acetyltransferase from Firmicutes bacterium

Seo, H.S., Dhe-Paganon, S.

(2023) Nat Med 29: 700-709

Released	2023-05-31
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Bacillota bacterium
Macromolecule	Acetyl-CoA acetyltransferase (protein)

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3F7F | pdb_00003f7f

Structure of Nup120

3H7N | pdb_00003h7n

Structure of Nup120

4MBO | pdb_00004mbo

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

4MBR | pdb_00004mbr

3.65 Angstrom Crystal Structure of Serine-rich Repeat Protein (Srr2) from Streptococcus agalactiae

4MHC | pdb_00004mhc

Crystal Structure of a Nucleoporin

4OWR | pdb_00004owr

Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98

6MR4 | pdb_00006mr4

Crystal structure of the Sth1 bromodomain from S.cerevisiae

6UCH | pdb_00006uch

SMARCB1 nucleosome-interacting C-terminal alpha helix

8CUC | pdb_00008cuc

Crystal structure analysis of SALL4 zinc finger domain in complex with DNA

8ECM | pdb_00008ecm

Crystal Structure Analysis of Acetyl-CoA acetyltransferase from Firmicutes bacterium

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3F7F | pdb_00003f7f

3H7N | pdb_00003h7n

4MBO | pdb_00004mbo

4MBR | pdb_00004mbr

4MHC | pdb_00004mhc

4OWR | pdb_00004owr

6MR4 | pdb_00006mr4

6UCH | pdb_00006uch

8CUC | pdb_00008cuc

8ECM | pdb_00008ecm