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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shoham, Y."

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Search Summary

This query matches 108 Structures.

Refinements

Structure Determination Methodology

experimental (108)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (95)
	Streptomyces griseus (6)
	Acetivibrio thermocellus (2)
	Escherichia coli (2)
	Bacillus subtilis (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Ruminiclostridium cellulolyticum (1)

Taxonomy

Bacteria (108)

Experimental Method

X-RAY DIFFRACTION (108)

Polymer Entity Type

Protein (108)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (46)
	2.0 - 2.5 (35)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (18)
	2005 - 2009 (18)
	2010 - 2014 (15)
	2015 - 2019 (40)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (75)
	Transferases (4)
	Lyases (2)

Symmetry Type

	Asymmetric (54)
	Cyclic (41)
	Dihedral (23)

SCOP Classification

	Alpha and beta proteins (a/b) (73)
	All beta proteins (17)
	Alpha and beta proteins (a+b) (8)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 108 Structures

Page 1 of 5

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1ANU \| pdb_00001anu	Download File View File

COHESIN-2 DOMAIN OF THE CELLULOSOME FROM CLOSTRIDIUM THERMOCELLUM

Shimon, L.J.W., Yaron, S., Shoham, Y., Lamed, R., Morag, E., Bayer, E.A., Frolow, F.

(1997) Structure 5: 381-390

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Acetivibrio thermocellus
Macromolecule	COHESIN-2 (protein)

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1G43 \| pdb_00001g43	Download File View File

CRYSTAL STRUCTURE OF A FAMILY IIIA CBD FROM CLOSTRIDIUM CELLULOLYTICUM

Shimon, L.J.W., Pages, S., Belaich, A., Belaich, J.-P., Bayer, E.A., Lamed, R., Shoham, Y., Frolow, F.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1560-1568

Released	2000-12-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	SCAFFOLDING PROTEIN (protein)
Unique Ligands	CA, ZN

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1G7U \| pdb_00001g7u	Download File View File

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH SUBSTRATE PHOSPHOENOL PYRUVATE

Asojo, O.A., Friedman, J.M., Belakhov, V., Shoham, Y., Adir, N., Baasov, T.

(2001) Biochemistry 40: 6326-6334

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PEP

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1G7V \| pdb_00001g7v	Download File View File

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR

Asojo, O.A., Friedman, J.M., Belakhov, V., Shoham, Y., Adir, N., Baasov, T.

(2001) Biochemistry 40: 6326-6334

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PAI

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1HIZ \| pdb_00001hiz	Download File View File

Xylanase T6 (Xt6) from Bacillus Stearothermophilus

Sainz, G., Tepplitsky, A., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) Acta Crystallogr D Biol Crystallogr 60: 836

Released	2002-01-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	GLA, GLC, SO4

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1K9D \| pdb_00001k9d	Download File View File

The 1.7 A crystal structure of alpha-D-glucuronidase, a family-67 glycoside hydrolase from Bacillus stearothermophilus T-1

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL

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1K9E \| pdb_00001k9e	Download File View File

Crystal structure of a mutated family-67 alpha-D-glucuronidase (E285N) from Bacillus stearothermophilus T-6, complexed with 4-O-methyl-glucuronic acid

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GCV, GOL

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1K9F \| pdb_00001k9f	Download File View File

Crystal structure of a mutated family-67 alpha-D-glucuronidase (E285N) from Bacillus stearothermophilus T-6, complexed with aldotetraouronic acid

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL
Unique branched monosaccharides	GCV, XYP

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1L8N \| pdb_00001l8n	Download File View File

The 1.5A crystal structure of alpha-D-glucuronidase from Bacillus stearothermophilus T-1, complexed with 4-O-methyl-glucuronic acid and xylotriose

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-03-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCW, GOL
Unique branched monosaccharides	XYP

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1MQP \| pdb_00001mqp	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-6

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL

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1MQQ \| pdb_00001mqq	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-1 COMPLEXED WITH GLUCURONIC ACID

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCU, GOL

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1MQR \| pdb_00001mqr	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE (E386Q) FROM BACILLUS STEAROTHERMOPHILUS T-6

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GOL

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1N82 \| pdb_00001n82	Download File View File

The high-resolution crystal structure of IXT6, a thermophilic, intracellular xylanase from G. stearothermophilus

Solomon, V., Teplitsky, A., Golan, G., Gilboa, R., Reiland, V., Shulami, S., Moryles, S., Zolotnitsky, G., Shoham, Y., Shoham, G.

To be published

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	intra-cellular xylanase (protein)
Unique Ligands	GOL, NA

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1PZ2 \| pdb_00001pz2	Download File View File

Crystal structure of a transient covalent reaction intermediate of a family 51 alpha-L-arabinofuranosidase

Hoevel, K., Shallom, D., Niefind, K., Belakhov, V., Shoham, G., Baasov, T., Shoham, Y., Schomburg, D.

(2003) EMBO J 22: 4922-4932

Released	2003-10-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alpha-L-arabinofuranosidase (protein)
Unique Ligands	AHR

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1PZ3 \| pdb_00001pz3	Download File View File

Crystal structure of a family 51 (GH51) alpha-L-arabinofuranosidase from Geobacillus stearothermophilus T6

Hoevel, K., Shallom, D., Niefind, K., Belakhov, V., Shoham, G., Baasov, T., Shoham, Y., Schomburg, D.

(2003) EMBO J 22: 4922-4932

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alpha-L-arabinofuranosidase (protein)
Unique Ligands	GOL

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1QW8 \| pdb_00001qw8	Download File View File

Crystal structure of a family 51 alpha-L-arabinofuranosidase in complex with Ara-alpha(1,3)-Xyl

Hoevel, K., Shallom, D., Niefind, K., Belakhov, V., Shoham, G., Bassov, T., Shoham, Y., Schomburg, D.

(2003) EMBO J 22: 4922-4932

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alpha-L-arabinofuranosidase (protein)
Unique branched monosaccharides	AHR, XYP

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1QW9 \| pdb_00001qw9	Download File View File

Crystal structure of a family 51 alpha-L-arabinofuranosidase in complex with 4-nitrophenyl-Ara

Hoevel, K., Shallom, D., Niefind, K., Belakhov, V., Shoham, G., Bassov, T., Shoham, Y., Schomburg, D.

(2003) EMBO J 22: 4922-4932

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alpha-L-arabinofuranosidase (protein)
Unique Ligands	KHP

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1R85 \| pdb_00001r85	Download File View File

Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6): The WT enzyme (monoclinic form) at 1.45A resolution

Bar, M., Golan, G., Nechama, M., Zolotnitsky, G., Shoham, Y., Shoham, G.

(2004) Proc Natl Acad Sci U S A 101: 11275-11280

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, GOL, SO4, ZN

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1R86 \| pdb_00001r86	Download File View File

Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The E159A/E265A mutant at 1.8A resolution

Bar, M., Golan, G., Zolotnitsky, G., Shoham, Y., Shoham, G.

To be published

Released	2005-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, SO4, ZN

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1R87 \| pdb_00001r87	Download File View File

Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The complex of the WT enzyme with xylopentaose at 1.67A resolution

Bar, M., Golan, G., Zolotnitsky, G., Shoham, Y., Shoham, G.

(2004) Proc Natl Acad Sci U S A 101: 11275-11280

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, SO4, ZN
Unique branched monosaccharides	XYP