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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shukla, A."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (7)
	Escherichia coli K-12 (2)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
	Streptococcus agalactiae NEM316 (1)

Taxonomy

Bacteria (11)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (11)
	RNA (2)

Refinement Resolution (Å)

	2.0 - 2.5 (5)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (2)
	2020 - 2024 (9)

Enzyme Classification Name

Ligases (7)

Symmetry Type

	Asymmetric (8)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (1)
	Artifacts (2)
	All alpha proteins (1)

AllSelected

1 to 11 of 11 Structures

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3O9O \| pdb_00003o9o	Download File View File

Crystal Structure of GBS1074, an Esat-6 homologue from Group B Streptococcus

White, S.A., Shukla, A., Anthony, M.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1421-1425

Released	2010-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Uncharacterized protein gbs1074 (protein)

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4OHF \| pdb_00004ohf	Download File View File

Crystal structure of cytosolic nucleotidase II (LPG0095) in complex with GMP from Legionella pneumophila, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR1

Srinivisan, B., Forouhar, F., Shukla, A., Sampangi, C., Kulkarni, S., Abashidze, M., Seetharaman, J., Lew, S., Mao, L., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.M., Tong, L., Balaram, H., Northeast Structural Genomics Consortium (NESG)

(2014) FEBS J 281: 1613-1628

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Cytosolic IMP-GMP specific 5'-nucleotidase (protein)
Unique Ligands	5GP, MG, PO4

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6KDU \| pdb_00006kdu	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) Acta Crystallogr D Struct Biol 77: 776-789

Released	2020-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	AMP, NMN, SO4

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6KJM \| pdb_00006kjm	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) J Struct Biol 213: 107655-107655

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	AMP, NMN, SO4

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6KKV \| pdb_00006kkv	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) J Struct Biol 213: 107655-107655

Released	2020-07-29
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	DKR, SO4

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6KRH \| pdb_00006krh	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) Acta Crystallogr D Struct Biol 77: 776-789

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	AMP, NMN, SO4

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6KSC \| pdb_00006ksc	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) Acta Crystallogr D Struct Biol 77: 776-789

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	AMP, SO4

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6KSD \| pdb_00006ksd	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Shukla, A., Afsar, M.

(2021) Acta Crystallogr D Struct Biol 77: 776-789

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	NMN, SO4

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6LW8 \| pdb_00006lw8	Download File View File

Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis

Ramachandran, R., Afsar, M., Shukla, A.

(2021) J Struct Biol 213: 107655-107655

Released	2021-02-10
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA ligase A (protein)
Unique Ligands	EWO, GOL, SO4