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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Skopintsev, P."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (8)
	Mycobacterium tuberculosis H37Rv (6)
	Paracoccus sp. SSG05 (4)
	Streptococcus sanguinis SK36 (4)
	Bubalus bubalis (3)
	Echis carinatus (3)
	Viscum album (3)
	Capra hircus (2)
	Mesobuthus tamulus (2)
	Mycobacterium tuberculosis (2)

More...

Taxonomy

	Eukaryota (23)
	Bacteria (22)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (34)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (11)
	2.5 - 3.0 (12)
	3.0 - 3.5 (11)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (10)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (23)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (15)
	Isomerases (8)
	Oxidoreductases (5)
	Lyases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (15)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (8)
	Small proteins (4)
	All beta proteins (4)
	Artifacts (1)

AllSelected

1 to 25 of 46 Structures

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1BIY \| pdb_00001biy	Download File View File

STRUCTURE OF DIFERRIC BUFFALO LACTOFERRIN

Karthikeyan, S., Yadav, S., Singh, T.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 684-689

Released	1999-01-13
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Bubalus bubalis
Macromolecule	LACTOFERRIN (protein)
Unique Ligands	CO3, FE

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1CE2 \| pdb_00001ce2	Download File View File

STRUCTURE OF DIFERRIC BUFFALO LACTOFERRIN AT 2.5A RESOLUTION

Karthikeyan, S., Paramasivam, M., Yadav, S., Srinivasan, A., Singh, T.P.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1805-1813

Released	1999-03-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bubalus bubalis
Macromolecule	PROTEIN (LACTOFERRIN) (protein)
Unique Ligands	CO3, FE

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1DQ7 \| pdb_00001dq7	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A NEUROTOXIN FROM RED SCORPION (BUTHUS TAMULUS) AT 2.2A RESOLUTION.

Sharma, M., Yadav, S., Karthikeyan, S., Kumar, S., Paramasivam, M., Srinivasan, A., Singh, T.P.

To be published

Released	2000-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mesobuthus tamulus
Macromolecule	NEUROTOXIN (protein)

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1I6B \| pdb_00001i6b	Download File View File

STRUCTURE OF EQUINE APOLACTOFERRIN AT 3.2 A RESOLUTION USING CRYSTALS GROWN AT 303K

Kumar, P., Yadav, S., Singh, T.P.

(2002) Acta Crystallogr D Biol Crystallogr 58: 225-232

Released	2002-02-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Equus caballus
Macromolecule	LACTOTRANSFERRIN (protein)

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1JW1 \| pdb_00001jw1	Download File View File

Crystallization and structure determination of goat lactoferrin at 4.0 resolution: A new form of packing in lactoferrins with a high solvent content in crystals

Kumar, P., Yadav, S., Singh, T.P.

(2002) Indian J Biochem Biophys 39: 16-21

Released	2003-04-29
Method	X-RAY DIFFRACTION 4 Å
Organisms	Capra hircus
Macromolecule	LACTOFERRIN (protein)
Unique Ligands	FE

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1LJY \| pdb_00001ljy	Download File View File

Crystal Structure of a Novel Regulatory 40 kDa Mammary Gland Protein (MGP-40) secreted during Involution

Mohanty, A.K., Singh, G., Paramasivam, M., Saravanan, K., Jabeen, T., Sharma, S., Yadav, S., Kaur, P., Kumar, P., Srinivasan, A., Singh, T.P.

(2003) J Biological Chem 278: 14451-14460

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Capra hircus
Macromolecule	MGP-40 (protein)
Unique branched monosaccharides	NAG, NDG

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1N76 \| pdb_00001n76	Download File View File

CRYSTAL STRUCTURE OF HUMAN SEMINAL LACTOFERRIN AT 3.4 A RESOLUTION

Kumar, J., Weber, W., Munchau, S., Yadav, S., Singh, S.B., Sarvanan, K., Paramsivam, M., Sharma, S., Kaur, P., Bhushan, A., Srinivasan, A., Betzel, C., Singh, T.P.

(2003) Indian J Biochem Biophys 40: 14-21

Released	2003-02-18
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	LACTOFERRIN (protein)
Unique Ligands	CO3, FE, NA

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1PC8 \| pdb_00001pc8	Download File View File

Crystal Structure of a novel form of mistletoe lectin from Himalayan Viscum album L. at 3.8A resolution

Mishra, V., Ethayathulla, A.S., Paramasivam, M., Singh, G., Yadav, S., Kaur, P., Sharma, R.S., Babu, C.R., Singh, T.P.

(2004) Acta Crystallogr D Biol Crystallogr 60: 2295-2304

Released	2004-06-22
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Viscum album
Macromolecule	Himalayan mistletoe ribosome-inactivating protein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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1RMR \| pdb_00001rmr	Download File View File

Crystal Structure of Schistatin, a Disintegrin Homodimer from saw-scaled Viper (Echis carinatus) at 2.5 A resolution

Bilgrami, S., Tomar, S., Yadav, S., Kaur, P., Kumar, J., Jabeen, T., Sharma, S., Singh, T.P.

(2004) J Mol Biology 341: 829-837

Released	2004-06-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Echis carinatus
Macromolecule	Disintegrin schistatin (protein)

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1TEJ \| pdb_00001tej	Download File View File

Crystal structure of a disintegrin heterodimer at 1.9 A resolution.

Bilgrami, S., Kaur, P., Yadav, S., Perbandt, M., Betzel, C., Singh, T.P.

(2005) Biochemistry 44: 11058-11066

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Echis carinatus
Macromolecule	disintegrin chain A (protein) disintegrin chain B (protein)

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1TFM \| pdb_00001tfm	Download File View File

CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM

Mishra, V., Bilgrami, S., Paramasivam, M., Yadav, S., Sharma, R.S., Kaur, P., Srinivasan, A., Babu, C.R., Singh, T.P.

To be published

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Viscum album
Macromolecule	Himalayan mistletoe ribosome-inactivating protein (protein)
Unique Ligands	GAL, NAG, P6C
Unique branched monosaccharides	BGC, BMA, GAL, NAG

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1TFV \| pdb_00001tfv	Download File View File

CRYSTAL STRUCTURE OF A BUFFALO SIGNALING GLYCOPROTEIN (SPB-40) SECRETED DURING INVOLUTION

Bilgrami, S., Saravanan, K., Yadav, S., Kaur, P., Srinivasan, A., Singh, T.P.

To be published

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bubalus bubalis
Macromolecule	mammary gland protein 40 (protein)
Unique branched monosaccharides	NAG

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1YF8 \| pdb_00001yf8	Download File View File

Crystal structure of Himalayan mistletoe RIP reveals the presence of a natural inhibitor and a new functionally active sugar-binding site

Mishra, V., Bilgrami, S., Sharma, R.S., Kaur, P., Yadav, S., Betzel, C., Babu, C.R., Singh, T.P.

(2005) J Biological Chem 280: 20712-20721

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Viscum album
Macromolecule	Beta-galactoside-specific lectin 4 (protein)
Unique Ligands	GAL, NAG, P6C
Unique branched monosaccharides	BGC, BMA, GAL, MAN, NAG

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1Z1X \| pdb_00001z1x	Download File View File

Crystal Structure of a novel disintegrin from Saw-scaled viper at 3.2 A resolution

Hassan, M.I., Ethayathulla, A.S., Bilgrami, S., Singh, B., Yadav, S., Singh, T.P.

To be published

Released	2005-04-19
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Echis carinatus
Macromolecule	disintegrin (protein)

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2A7T \| pdb_00002a7t	Download File View File

Crystal Structure of a novel neurotoxin from Buthus tamalus at 2.2A resolution.

Ethayathulla, A.S., Sharma, M., Saravanan, K., Sharma, S., Kaur, P., Yadav, S., Srinivasan, A., Singh, T.P.

(2006) J Struct Biol 155: 52-62

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mesobuthus tamulus
Macromolecule	Neurotoxin (protein)

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3ES6 \| pdb_00003es6	Download File View File

Crystal structure of the novel complex formed between Zinc 2-glycoprotein (ZAG) and Prolactin inducible protein (PIP) from human seminal plasma

Hassan, M.I., Bilgrami, S., Kumar, V., Singh, N., Yadav, S., Kaur, P., Singh, T.P.

(2008) J Mol Biology 384: 663-672

Released	2008-10-28
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homo sapiens
Macromolecule	Prolactin-inducible protein (protein) Zinc-alpha-2-glycoprotein (protein)
Unique Ligands	CO3, P6G
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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3MWN \| pdb_00003mwn	Download File View File

Structure of the Novel 14 kDa Fragment of alpha-Subunit of Phycoerythrin from the Starving Cyanobacterium Phormidium Tenue

Soni, B.R., Hasan, M.I., Parmar, A., Ethayathulla, A.S., Kumar, R.P., Singh, N.K., Sinha, M., Kaur, P., Yadav, S., Sharma, S., Madamwar, D., Singh, T.P.

(2010) J Struct Biol 171: 247-255

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Phormidium tenue
Macromolecule	PHYCOERYTHRIN (protein)
Unique Ligands	CYC

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4GF9 \| pdb_00004gf9	Download File View File

Structural insights into the dual strategy of recognition of peptidoglycan recognition protein, PGRP-S: ternary complex of PGRP-S with LPS and fatty acid

Sharma, P., Dube, D., Sinha, M., Yadav, S., Kaur, P., Sharma, S., Singh, T.P.

(2013) PLoS One 8: e53756-e53756

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Camelus dromedarius
Macromolecule	Peptidoglycan recognition protein 1 (protein)
Unique Ligands	GOL, LP5, STE

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4I14 \| pdb_00004i14	Download File View File

Crystal Structure of Mtb-ribA2 (Rv1415)

Singh, M., Kumar, P., Yadav, S., Gautam, R., Sharma, N., Karthikeyan, S.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1633-1644

Released	2013-08-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Riboflavin biosynthesis protein RibBA (protein)
Unique Ligands	SO4, ZN

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4RL4 \| pdb_00004rl4	Download File View File

Crystal structure of GTP cyclohydrolase II from Helicobacter pylori 26695

Yadav, S., Karthikeyan, S.

(2015) J Struct Biol 192: 100-115

Released	2015-08-26
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Helicobacter pylori 26695
Macromolecule	GTP cyclohydrolase-2 (protein)
Unique Ligands	PPV

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5ZVJ \| pdb_00005zvj	Download File View File

Crystal structure of HtrA1 from Mycobacterium tuberculosis

Khundrakpam, H.S., Yadav, S., Kumar, D., Biswal, B.K.

(2018) Acta Crystallogr D Struct Biol 74: 906-921

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Serine protease (protein)
Unique Ligands	TRS

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6LVB \| pdb_00006lvb	Download File View File

Structure of Dimethylformamidase, tetramer

Arya, C.A., Yadav, S., Fine, J., Casanal, A., Chopra, G., Ramanathan, G., Subramanian, R., Vinothkumar, K.R.

(2020) Angew Chem Int Ed Engl 59: 16961-16966

Released	2020-06-03
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Paracoccus sp. SSG05
Macromolecule	N,N-dimethylformamidase large subunit (protein) N,N-dimethylformamidase small subunit (protein)
Unique Ligands	FE

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6LVC \| pdb_00006lvc	Download File View File

Structure of Dimethylformamidase, dimer

Arya, C.A., Yadav, S., Fine, J., Casanal, A., Chopra, G., Ramanathan, G., Subramanian, R., Vinothkumar, K.R.

(2020) Angew Chem Int Ed Engl 59: 16961-16966

Released	2020-06-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Paracoccus sp. SSG05
Macromolecule	N,N-dimethylformamidase large subunit (protein) N,N-dimethylformamidase small subunit (protein)
Unique Ligands	FE

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6LVD \| pdb_00006lvd	Download File View File

Structure of Dimethylformamidase, tetramer, Y440A mutant

Arya, C.A., Yadav, S., Fine, J., Casanal, A., Chopra, G., Ramanathan, G., Subramanian, R., Vinothkumar, K.R.

(2020) Angew Chem Int Ed Engl 59: 16961-16966

Released	2020-06-03
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Paracoccus sp. SSG05
Macromolecule	N,N-dimethylformamidase large subunit (protein) N,N-dimethylformamidase small subunit (protein)

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6LVE \| pdb_00006lve	Download File View File

Structure of Dimethylformamidase, tetramer, E521A mutant

Arya, C.A., Yadav, S., Fine, J., Casanal, A., Chopra, G., Ramanathan, G., Subramanian, R., Vinothkumar, K.R.

(2020) Angew Chem Int Ed Engl 59: 16961-16966

Released	2020-06-03
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Paracoccus sp. SSG05
Macromolecule	N,N-dimethylformamidase large subunit (protein) N,N-dimethylformamidase small subunit (protein)

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BIY | pdb_00001biy

1CE2 | pdb_00001ce2

1DQ7 | pdb_00001dq7

1I6B | pdb_00001i6b

1JW1 | pdb_00001jw1

1LJY | pdb_00001ljy

1N76 | pdb_00001n76

1PC8 | pdb_00001pc8

1RMR | pdb_00001rmr

1TEJ | pdb_00001tej

1TFM | pdb_00001tfm

1TFV | pdb_00001tfv

1YF8 | pdb_00001yf8

1Z1X | pdb_00001z1x

2A7T | pdb_00002a7t

3ES6 | pdb_00003es6

3MWN | pdb_00003mwn

4GF9 | pdb_00004gf9

4I14 | pdb_00004i14

4RL4 | pdb_00004rl4

5ZVJ | pdb_00005zvj

6LVB | pdb_00006lvb

6LVC | pdb_00006lvc

6LVD | pdb_00006lvd

6LVE | pdb_00006lve