RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Thompson, A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 51 Structures.

Refinements

Structure Determination Methodology

experimental (51)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (8)
	Bacteroides thetaiotaomicron VPI-5482 (7)
	Mycobacterium tuberculosis (4)
	Acinetobacter calcoaceticus (3)
	Mus musculus (3)
	Ruminococcus flavefaciens FD-1 (3)
	Streptomyces clavuligerus (3)
	Clostridium phage phiCTP1 (2)
	Escherichia coli (2)
	Escherichia coli UTI89 (2)

More...

Taxonomy

	Bacteria (36)
	Eukaryota (11)
	Duplodnaviria (3)

Experimental Method

X-RAY DIFFRACTION (51)

Polymer Entity Type

	Protein (50)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (18)
	2.0 - 2.5 (19)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (12)
	2005 - 2009 (11)
	2010 - 2014 (5)
	2015 - 2019 (9)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (11)
	Oxidoreductases (9)
	Transferases (5)
	Isomerases (1)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (26)
	Dihedral (3)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (8)

AllSelected

1 to 25 of 51 Structures

Page 1 of 3

Sort by

Explore in 3D

1DCS \| pdb_00001dcs	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE FROM S. CLAVULIGERUS

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	SO4

Explore in 3D

1GQU \| pdb_00001gqu	Download File View File

Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing

Abrescia, N.G.A., Thompson, A., Huynh-Dinh, T., Subirana, J.A.

(2002) Proc Natl Acad Sci U S A 99: 2806

Released	2002-12-05
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'(APTPAPUPAPT)-3') (nucleic acid)

Explore in 3D

1HIZ \| pdb_00001hiz	Download File View File

Xylanase T6 (Xt6) from Bacillus Stearothermophilus

Sainz, G., Tepplitsky, A., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) Acta Crystallogr D Biol Crystallogr 60: 836

Released	2002-01-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	GLA, GLC, SO4

Explore in 3D

1JOF \| pdb_00001jof	Download File View File

Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme

Kajander, T., Merckel, M.C., Thompson, A., Deacon, A.M., Mazur, P., Kozarich, J.W., Goldman, A.

(2002) Structure 10: 483-492

Released	2002-04-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Neurospora crassa
Macromolecule	CARBOXY-CIS,CIS-MUCONATE CYCLASE (protein)
Unique Ligands	BME, PIN, SO4

Explore in 3D

1JOT \| pdb_00001jot	Download File View File

STRUCTURE OF THE LECTIN MPA COMPLEXED WITH T-ANTIGEN DISACCHARIDE

Lee, X., Thompson, A., Zhang, Z., Hoa, T.-T., Biesterfeldt, J., Ogata, C., Xu, L., Johnston, R.A.Z., Young, N.M.

(1998) J Biological Chem 273: 6312-6318

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Maclura pomifera
Macromolecule	AGGLUTININ (protein)
Unique branched monosaccharides	A2G, GAL

Explore in 3D

1JU2 \| pdb_00001ju2	Download File View File

Crystal structure of the hydroxynitrile lyase from almond

Dreveny, I., Gruber, K., Glieder, A., Thompson, A., Kratky, C.

(2001) Structure 9: 803-815

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Prunus dulcis
Macromolecule	hydroxynitrile lyase (protein)
Unique Ligands	FAD, IPA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG, NDG

Explore in 3D

1K9D \| pdb_00001k9d	Download File View File

The 1.7 A crystal structure of alpha-D-glucuronidase, a family-67 glycoside hydrolase from Bacillus stearothermophilus T-1

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL

Explore in 3D

1K9E \| pdb_00001k9e	Download File View File

Crystal structure of a mutated family-67 alpha-D-glucuronidase (E285N) from Bacillus stearothermophilus T-6, complexed with 4-O-methyl-glucuronic acid

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GCV, GOL

Explore in 3D

1K9F \| pdb_00001k9f	Download File View File

Crystal structure of a mutated family-67 alpha-D-glucuronidase (E285N) from Bacillus stearothermophilus T-6, complexed with aldotetraouronic acid

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2002-10-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL
Unique branched monosaccharides	GCV, XYP

Explore in 3D

1L4I \| pdb_00001l4i	Download File View File

Crystal Structure of the Periplasmic Chaperone SfaE

Knight, S.D., Choudhury, D., Hultgren, S., Pinkner, J., Stojanoff, V., Thompson, A.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1016-1022

Released	2002-06-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	SfaE PROTEIN (protein)

Explore in 3D

1L8N \| pdb_00001l8n	Download File View File

The 1.5A crystal structure of alpha-D-glucuronidase from Bacillus stearothermophilus T-1, complexed with 4-O-methyl-glucuronic acid and xylotriose

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-03-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCW, GOL
Unique branched monosaccharides	XYP

Explore in 3D

1MQP \| pdb_00001mqp	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-6

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alpha-D-glucuronidase (protein)
Unique Ligands	GOL

Explore in 3D

1MQQ \| pdb_00001mqq	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-1 COMPLEXED WITH GLUCURONIC ACID

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCU, GOL

Explore in 3D

1MQR \| pdb_00001mqr	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE (E386Q) FROM BACILLUS STEAROTHERMOPHILUS T-6

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GOL

Explore in 3D

1NCG \| pdb_00001ncg	Download File View File

STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS

Shapiro, L., Fannon, A.M., Kwong, P.D., Thompson, A., Lehmann, M.S., Grubel, G., Legrand, J.-F., Als-Nielsen, J., Colman, D.R., Hendrickson, W.A.

(1995) Nature 374: 327-337

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	N-CADHERIN (protein)
Unique Ligands	YB

Explore in 3D

1NCH \| pdb_00001nch	Download File View File

STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS

Shapiro, L., Fannon, A.M., Kwong, P.D., Thompson, A., Lehmann, M.S., Grubel, G., Legrand, J.-F., Als-Nielsen, J., Colman, D.R., Hendrickson, W.A.

(1995) Nature 374: 327-337

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	N-CADHERIN (protein)
Unique Ligands	YB

Explore in 3D

1NCI \| pdb_00001nci	Download File View File

STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS

Shapiro, L., Fannon, A.M., Kwong, P.D., Thompson, A., Lehmann, M.S., Grubel, G., Legrand, J.-F., Als-Nielsen, J., Colman, D.R., Hendrickson, W.A.

(1995) Nature 374: 327-337

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	N-CADHERIN (protein)
Unique Ligands	IUM

Explore in 3D

1QUN \| pdb_00001qun	Download File View File

X-RAY STRUCTURE OF THE FIMC-FIMH CHAPERONE ADHESIN COMPLEX FROM UROPATHOGENIC E.COLI

Choudhury, D., Thompson, A., Stojanoff, V., Langerman, S., Pinkner, J., Hultgren, S.J., Knight, S.

(1999) Science 285: 1061-1066

Released	1999-08-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	MANNOSE-SPECIFIC ADHESIN FIMH (protein) PAPD-LIKE CHAPERONE FIMC (protein)

Explore in 3D

1RXF \| pdb_00001rxf	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II)

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	FE

Explore in 3D

1RXG \| pdb_00001rxg	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II) AND 2-OXOGLUTARATE

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Shofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	AKG, FE, SO4

Explore in 3D

1ZNW \| pdb_00001znw	Download File View File

Crystal Structure Of Unliganded Form Of Mycobacterium tuberculosis Guanylate Kinase

Hible, G., Christova, P., Renault, L., Seclaman, E., Thompson, A., Girard, E., Munier-Lehmann, H., Cherfils, J.

(2006) Proteins 62: 489-500

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Guanylate kinase (protein)

Explore in 3D

1ZNX \| pdb_00001znx	Download File View File

Crystal Structure Of Mycobacterium tuberculosis Guanylate Kinase In Complex With GMP

Hible, G., Christova, P., Renault, L., Seclaman, E., Thompson, A., Girard, E., Munier-Lehmann, H., Cherfils, J.

(2006) Proteins 62: 489-500

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Guanylate kinase (protein)
Unique Ligands	5GP

Explore in 3D

1ZNY \| pdb_00001zny	Download File View File

Crystal Structure Of Mycobacterium tuberculosis Guanylate Kinase In Complex With GDP

Hible, G., Christova, P., Renault, L., Seclaman, E., Thompson, A., Girard, E., Munier-Lehmann, H., Cherfils, J.

(2006) Proteins 62: 489-500

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Guanylate kinase (protein)
Unique Ligands	GDP

Explore in 3D

1ZNZ \| pdb_00001znz	Download File View File

Crystal Structure Of The Reduced Form Of Mycobacterium tuberculosis Guanylate Kinase In Complex With GDP

Hible, G., Christova, P., Renault, L., Seclaman, E., Thompson, A., Girard, E., Munier-Lehmann, H., Cherfils, J.

(2006) Proteins 62: 489-500

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Guanylate kinase (protein)
Unique Ligands	GDP

Explore in 3D

2WVX \| pdb_00002wvx	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL

1 to 25 of 51 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DCS | pdb_00001dcs

1GQU | pdb_00001gqu

1HIZ | pdb_00001hiz

1JOF | pdb_00001jof

1JOT | pdb_00001jot

1JU2 | pdb_00001ju2

1K9D | pdb_00001k9d

1K9E | pdb_00001k9e

1K9F | pdb_00001k9f

1L4I | pdb_00001l4i

1L8N | pdb_00001l8n

1MQP | pdb_00001mqp

1MQQ | pdb_00001mqq

1MQR | pdb_00001mqr

1NCG | pdb_00001ncg

1NCH | pdb_00001nch

1NCI | pdb_00001nci

1QUN | pdb_00001qun

1RXF | pdb_00001rxf

1RXG | pdb_00001rxg

1ZNW | pdb_00001znw

1ZNX | pdb_00001znx

1ZNY | pdb_00001zny

1ZNZ | pdb_00001znz

2WVX | pdb_00002wvx