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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tran, K."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Cereibacter sphaeroides (6)
	Macaca mulatta (3)
	Halothiobacillus neapolitanus (1)

Taxonomy

	Bacteria (7)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (3)
	2020 - 2024 (6)

Enzyme Classification Name

Lyases (1)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 10 of 10 Structures

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1SVD \| pdb_00001svd	Download File View File

The structure of Halothiobacillus neapolitanus RuBisCo

Kerfeld, C.A., Sawaya, M.R., Pashkov, I., Cannon, G., Williams, E., Tran, K., Yeates, T.O.

To be published

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halothiobacillus neapolitanus
Macromolecule	Ribulose bisphosphate carboxylase small chain (protein) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (protein)
Unique Ligands	GOL, SO4

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4KTD \| pdb_00004ktd	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

Poulsen, C., Tran, K., Standfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Macaca mulatta
Macromolecule	GE136 Heavy Chain Fab (protein) GE136 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4KTE \| pdb_00004kte	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

Poulsen, C., Tran, K., Stanfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Macaca mulatta
Macromolecule	GE148 Heavy Chain Fab (protein) GE148 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4Q2Z \| pdb_00004q2z	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

Navis, M., Tran, K., Bale, S., Phad, G., Guenaga, J., Wilson, R., Soldemo, M., McKee, K., Sundling, C., Mascola, J., Li, Y., Wyatt, R.T., Hedestam, G.B.K.

(2014) PLoS Pathog 10: e1004337-e1004337

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Macaca mulatta
Macromolecule	Heavy chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein) Light chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein)

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8VTJ \| pdb_00008vtj	Download File View File

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-cyanophenylalanine

Mathews, I., Tran, K., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO, U10

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8VTK \| pdb_00008vtk	Download File View File

Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine

Tran, K., Mathews, I., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO, U10

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8VTL \| pdb_00008vtl	Download File View File

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine

Tran, K., Mathews, I., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO

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8VTM \| pdb_00008vtm	Download File View File

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine

Tran, K., Mathews, I., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO

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8VTN \| pdb_00008vtn	Download File View File

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine

Tran, K., Mathews, I., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.57 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO

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8VTO \| pdb_00008vto	Download File View File

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine

Tran, K., Mathews, I., Boxer, S.G.

To be published

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, LDA, SPO, U10

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1SVD | pdb_00001svd

The structure of Halothiobacillus neapolitanus RuBisCo

4KTD | pdb_00004ktd

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

4KTE | pdb_00004kte

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

4Q2Z | pdb_00004q2z

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

8VTJ | pdb_00008vtj

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-cyanophenylalanine

8VTK | pdb_00008vtk

Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine

8VTL | pdb_00008vtl

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine

8VTM | pdb_00008vtm

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine

8VTN | pdb_00008vtn

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine

8VTO | pdb_00008vto

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1SVD | pdb_00001svd

4KTD | pdb_00004ktd

4KTE | pdb_00004kte

4Q2Z | pdb_00004q2z

8VTJ | pdb_00008vtj

8VTK | pdb_00008vtk

8VTL | pdb_00008vtl

8VTM | pdb_00008vtm

8VTN | pdb_00008vtn

8VTO | pdb_00008vto