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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Valpuesta, J.M."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Escherichia phage T7 (6)
	Homo sapiens (6)
	Influenza A virus (2)
	Bos taurus (1)
	Gallus gallus (1)
	Salasvirus phi29 (1)

Taxonomy

	Eukaryota (8)
	Duplodnaviria (7)
	Riboviria (2)

Experimental Method

	ELECTRON MICROSCOPY (15)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (17)
	RNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)
	> 4.5 (11)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (9)
	2015 - 2019 (1)
	2020 - 2024 (5)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (2)

Symmetry Type

	Asymmetric (2)
	Cyclic (8)
	Dihedral (5)
	Icosahedral (2)

SCOP Classification

Multi-domain proteins (alpha and beta) (1)

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1 to 17 of 17 Structures

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1H5W \| pdb_00001h5w	Download File View File

2.1A Bacteriophage Phi-29 Connector

Guasch, A., Pous, J., Ibarra, B., Gomis-Ruth, F.X., Valpuesta, J.M., Sousa, N., Carrascosa, J.L., Coll, M.

(2002) J Mol Biology 315: 663

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)
Unique Ligands	MPD

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2WFS \| pdb_00002wfs	Download File View File

Fitting of influenza virus NP structure into the 9-fold symmetryzed cryoEM reconstruction of an active RNP particle.

Coloma, R., Valpuesta, J.M., Arranz, R., Carrascosa, J.L., Ortin, J., Martin-Benito, J.

(2009) PLoS Pathog 5: 00491

Released	2009-07-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Influenza A virus
Macromolecule	NUCLEOPROTEIN (protein)

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2XQL \| pdb_00002xql	Download File View File

Fitting of the H2A-H2B histones in the electron microscopy map of the complex Nucleoplasmin:H2A-H2B histones (1:5).

Ramos, I., Martin-Benito, J., Finn, R., Bretana, L., Aloria, K., Arizmendi, J.M., Ausio, J., Muga, A., Valpuesta, J.M., Prado, A.

(2010) J Biological Chem 285: 33771

Released	2010-11-03
Method	ELECTRON MICROSCOPY 19.5 Å
Organisms	Gallus gallus
Macromolecule	HISTONE H2A-IV (protein) HISTONE H2B 5 (protein)

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2XSM \| pdb_00002xsm	Download File View File

Crystal structure of the mammalian cytosolic chaperonin CCT in complex with tubulin

Munoz, I.G., Yebenes, H., Zhou, M., Mesa, P., Serna, M., Bragado-Nilsson, E., Beloso, A., Robinson, C.V., Valpuesta, J.M., Montoya, G.

(2011) Nat Struct Mol Biol 18: 14

Released	2010-12-15
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 15

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2XVR \| pdb_00002xvr	Download File View File

Phage T7 empty mature head shell

Ionel, A., Velazquez-Muriel, J.A., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234

Released	2010-12-01
Method	ELECTRON MICROSCOPY 10.8 Å
Organisms	Escherichia phage T7
Macromolecule	MAJOR CAPSID PROTEIN 10A (protein)

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3IZG \| pdb_00003izg	Download File View File

Bacteriophage T7 prohead shell EM-derived atomic model

Ionel, A., Velazquez-Muriel, J.A., Agirrezabala, X., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234-242

Released	2010-11-17
Method	ELECTRON MICROSCOPY 10.9 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3J4A \| pdb_00003j4a	Download File View File

Structure of gp8 connector protein

Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.

(2013) J Biological Chem 288: 26290-26299

Released	2013-08-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia phage T7
Macromolecule	Head-to-tail joining protein (protein)

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3J4B \| pdb_00003j4b	Download File View File

Structure of T7 gatekeeper protein (gp11)

Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.

(2013) J Biological Chem 288: 26290-26299

Released	2013-08-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia phage T7
Macromolecule	Tail tubular protein A (protein)

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4BBL \| pdb_00004bbl	Download File View File

Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.

Arranz, R., Coloma, R., Chichon, F.J., Conesa, J.J., Carrascosa, J.L., Valpuesta, J.M., Ortin, J., Martin-Benito, J.

(2012) Science 338: 1634

Released	2012-12-05
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Influenza A virus
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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4BIJ \| pdb_00004bij	Download File View File

Threading model of T7 large terminase

Dauden, M.I., Martin-Benito, J., Sanchez-Ferrero, J.C., Pulido-Cid, M., Valpuesta, J.M., Carrascosa, J.L.

(2013) J Biological Chem 288: 16998

Released	2013-05-08
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Escherichia phage T7
Macromolecule	DNA MATURASE B (protein)

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4BIL \| pdb_00004bil	Download File View File

Threading model of the T7 large terminase within the gp8gp19 complex

Dauden, M.I., Martin-Benito, J., Sanchez-Ferrero, J.C., Pulido-Cid, M., Valpuesta, J.M., Carrascosa, J.L.

(2013) J Biological Chem 288: 16998

Released	2013-05-08
Method	ELECTRON MICROSCOPY 29 Å
Organisms	Escherichia phage T7
Macromolecule	DNA MATURASE B (protein)

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6QB8 \| pdb_00006qb8	Download File View File

Human CCT:mLST8 complex

Cuellar, J., Santiago, C., Ludlam, W.G., Bueno-Carrasco, M.T., Valpuesta, J.M., Willardson, B.M.

(2019) Nat Commun 10: 2865-2865

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.97 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ADP

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6ZN2 \| pdb_00006zn2	Download File View File

Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-12-08
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	SER-LEU-ILE-GLU-ASP-ALA-ARG-LYS-GLU-ARG-GLU-ALA-ALA-VAL-ALA-ALA-ALA-ALA (protein) Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

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6ZVP \| pdb_00006zvp	Download File View File

Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-11-17
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

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6ZZU \| pdb_00006zzu	Download File View File

Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-11-17
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE

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7A2G \| pdb_00007a2g	Download File View File

Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Flydal, M.I., Martinez, A., Valpuesta, J.M.

(2022) Nat Commun 13: 74-74

Released	2021-12-01
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE

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7PIM \| pdb_00007pim	Download File View File

Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-12-22
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens
Macromolecule	Regulatory domain alpha-helix (protein) Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1H5W | pdb_00001h5w

2.1A Bacteriophage Phi-29 Connector

2WFS | pdb_00002wfs

Fitting of influenza virus NP structure into the 9-fold symmetryzed cryoEM reconstruction of an active RNP particle.

2XQL | pdb_00002xql

Fitting of the H2A-H2B histones in the electron microscopy map of the complex Nucleoplasmin:H2A-H2B histones (1:5).

2XSM | pdb_00002xsm

Crystal structure of the mammalian cytosolic chaperonin CCT in complex with tubulin

2XVR | pdb_00002xvr

Phage T7 empty mature head shell

3IZG | pdb_00003izg

Bacteriophage T7 prohead shell EM-derived atomic model

3J4A | pdb_00003j4a

Structure of gp8 connector protein

3J4B | pdb_00003j4b

Structure of T7 gatekeeper protein (gp11)

4BBL | pdb_00004bbl

Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.

4BIJ | pdb_00004bij

Threading model of T7 large terminase

4BIL | pdb_00004bil

Threading model of the T7 large terminase within the gp8gp19 complex

6QB8 | pdb_00006qb8

Human CCT:mLST8 complex

6ZN2 | pdb_00006zn2

Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.

6ZVP | pdb_00006zvp

Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms

6ZZU | pdb_00006zzu

Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).

7A2G | pdb_00007a2g

Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).

7PIM | pdb_00007pim

Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1H5W | pdb_00001h5w

2WFS | pdb_00002wfs

2XQL | pdb_00002xql

2XSM | pdb_00002xsm

2XVR | pdb_00002xvr

3IZG | pdb_00003izg

3J4A | pdb_00003j4a

3J4B | pdb_00003j4b

4BBL | pdb_00004bbl

4BIJ | pdb_00004bij

4BIL | pdb_00004bil

6QB8 | pdb_00006qb8

6ZN2 | pdb_00006zn2

6ZVP | pdb_00006zvp

6ZZU | pdb_00006zzu

7A2G | pdb_00007a2g

7PIM | pdb_00007pim