RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Van Beeumen, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Cellulomonas uda (6)
	Pseudoalteromonas haloplanktis (5)
	Brucella anthropi (2)
	Chlorobium limicola (2)
	Marichromatium gracile (2)
	Sporosarcina pasteurii (2)
	Bacillus subtilis (1)
	Ectothiorhodospira shaposhnikovii (1)
	Moritella profunda (1)
	Pseudomonas sp. 'TAC II 18 (1)

More...

Taxonomy

	Bacteria (23)
	Eukaryota (2)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (10)
	2005 - 2009 (7)
	2010 - 2014 (6)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (8)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (13)
	Dihedral (3)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	All beta proteins (4)
	Small proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 26 Structures

Page 1 of 2

Sort by

Explore in 3D

1A1S \| pdb_00001a1s	Download File View File

ORNITHINE CARBAMOYLTRANSFERASE FROM PYROCOCCUS FURIOSUS

Villeret, V., Clantin, B., Tricot, C., Legrain, C., Roovers, M., Stalon, V., Glansdorff, N., Van Beeumen, J.

(1998) Proc Natl Acad Sci U S A 95: 2801-2806

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	ORNITHINE CARBAMOYLTRANSFERASE (protein)

Explore in 3D

1B65 \| pdb_00001b65	Download File View File

Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold

Bompard-Gilles, C., Villeret, V., Davies, G.J., Fanuel, L., Joris, B., Frere, J.M., Van Beeumen, J.

(2000) Structure 8: 153-162

Released	1999-07-23
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Brucella anthropi
Macromolecule	PROTEIN (AMINOPEPTIDASE) (protein)

Explore in 3D

1CXY \| pdb_00001cxy	Download File View File

STRUCTURE AND CHARACTERIZATION OF ECTOTHIORHODOSPIRA VACUOLATA CYTOCHROME B558, A PROKARYOTIC HOMOLOGUE OF CYTOCHROME B5

Kostanjevecki, V., Leys, D., Van Driessche, G., Meyer, T.E., Cusanovich, M.A., Fischer, U., Guisez, Y., Van Beeumen, J.

(1999) J Biological Chem 274: 35614-35620

Released	1999-09-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Ectothiorhodospira shaposhnikovii
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

Explore in 3D

1EAR \| pdb_00001ear	Download File View File

Crystal structure of Bacillus pasteurii UreE at 1.7 A. Type II crystal form.

Remaut, H., Safarov, N., Ciurli, S., Van Beeumen, J.

(2001) J Biological Chem 276: 49365

Released	2002-01-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sporosarcina pasteurii
Macromolecule	UREASE ACCESSORY PROTEIN UREE (protein)
Unique Ligands	ZN

Explore in 3D

1EB0 \| pdb_00001eb0	Download File View File

Crystal structure of Bacillus pasteurii UreE at 1.85 A, phased by SIRAS. Type I crystal form.

Remaut, H., Safarov, N., Ciurli, S., Van Beeumen, J.

(2001) J Biological Chem 276: 49365

Released	2002-01-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Sporosarcina pasteurii
Macromolecule	UREASE ACCESSORY PROTEIN UREE (protein)
Unique Ligands	ZN

Explore in 3D

1EI5 \| pdb_00001ei5	Download File View File

CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM OCHROBACTRUM ANTHROPI

Bompard-Gilles, C., Remaut, H., Villeret, V., Prange, T., Fanuel, L., Joris, J., Frere, J.-M., Van Beeumen, J.

(2000) Structure 8: 971-980

Released	2000-10-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brucella anthropi
Macromolecule	D-AMINOPEPTIDASE (protein)

Explore in 3D

1H12 \| pdb_00001h12	Download File View File

Structure of a cold-adapted family 8 xylanase

Van Petegem, F., Collins, T., Meuwis, M.A., Feller, G., Gerday, C., Van Beeumen, J.

(2003) J Biological Chem 278: 7531

Released	2003-03-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	XYP, XYS

Explore in 3D

1H13 \| pdb_00001h13	Download File View File

Structure of a cold-adapted family 8 xylanase

Van Petegem, F., Collins, T., Meuwis, M.A., Feller, G., Gerday, C., Van Beeumen, J.

(2003) J Biological Chem 278: 7531

Released	2003-03-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)

Explore in 3D

1H14 \| pdb_00001h14	Download File View File

Structure of a cold-adapted family 8 xylanase

Van Petegem, F., Collins, T., Meuwis, M.A., Feller, G., Gerday, C., Van Beeumen, J.

(2003) J Biological Chem 278: 7531

Released	2003-03-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)

Explore in 3D

1H1N \| pdb_00001h1n	Download File View File

Atomic resolution structure of the major endoglucanase from Thermoascus aurantiacus

Van Petegem, F., Vandenberghe, I., Bhat, M.K., Van Beeumen, J.

(2002) Biochem Biophys Res Commun 296: 161

Released	2002-08-12
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Thermoascus aurantiacus
Macromolecule	ENDO TYPE CELLULASE ENGI (protein)

Explore in 3D

1H71 \| pdb_00001h71	Download File View File

Psychrophilic Protease from Pseudoalteromonas 'TAC II 18'

Villeret, V., Van Petegem, F., Aghajari, N., Chessa, J.-P., Gerday, C., Haser, R., Van Beeumen, J.

(2003) Proteins 50: 636

Released	2003-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas sp. 'TAC II 18
Macromolecule	SERRALYSIN (protein)
Unique Ligands	CA, ZN

Explore in 3D

1HCU \| pdb_00001hcu	Download File View File

alpha-1,2-mannosidase from Trichoderma reesei

Van Petegem, F., Contreras, H., Contreras, R., Van Beeumen, J.

(2001) J Mol Biology 312: 157

Released	2001-10-18
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Trichoderma reesei
Macromolecule	ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, NAG

Explore in 3D

1HI9 \| pdb_00001hi9	Download File View File

Zn-dependent D-aminopeptidase DppA from Bacillus subtilis, a self-compartmentalizing protease.

Remaut, H., Bompard-Gilles, C., Goffin, C., Frere, J.M., Van Beeumen, J.

(2001) Nat Struct Biol 8: 674

Released	2001-08-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	DIPEPTIDE TRANSPORT PROTEIN DPPA (protein)
Unique Ligands	ZN

Explore in 3D

1XW2 \| pdb_00001xw2	Download File View File

Structure Of A Cold-Adapted Family 8 Xylanase

Collins, T., De Vos, D., Hoyoux, A., Savvides, S.N., Gerday, C., Van Beeumen, J., Feller, G.

(2005) J Mol Biology 354: 425-435

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	Endo-1,4-beta-Xylanase (protein)

Explore in 3D

2A8Z \| pdb_00002a8z	Download File View File

Structure Of A Cold-Adapted Family 8 Xylanase

Collins, T., De Vos, D., Hoyoux, A., Savvides, S.N., Gerday, C., Van Beeumen, J., Feller, G.

(2005) J Mol Biology 354: 425-435

Released	2005-12-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	endo-1,4-beta-xylanase (protein)

Explore in 3D

2BE7 \| pdb_00002be7	Download File View File

Crystal structure of the unliganded (T-state) aspartate transcarbamoylase of the psychrophilic bacterium Moritella profunda

De Vos, D., Savvides, S.N., Van Beeumen, J.

(2007) J Mol Biology 365: 379-395

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Moritella profunda
Macromolecule	Aspartate Carbamoyltransferase Catalytic Chain (protein) Aspartate Carbamoyltransferase Regulatory Chain (protein)
Unique Ligands	SO4, ZN

Explore in 3D

2NNC \| pdb_00002nnc	Download File View File

Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum

Stout, J., Van Driessche, G., Savvides, S.N., Van Beeumen, J.

(2007) Protein Sci 16: 589-601

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfur covalently-binding protein (protein)
Unique Ligands	CL, HDZ, PO4

Explore in 3D

2NNF \| pdb_00002nnf	Download File View File

Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum

Stout, J., Van Driessche, G., Savvides, S.N., Van Beeumen, J.

(2007) Protein Sci 16: 589-601

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfur covalently-binding protein (protein)
Unique Ligands	PO4

Explore in 3D

2R9Z \| pdb_00002r9z	Download File View File

Glutathione amide reductase from Chromatium gracile

Van Petegem, F., Vergauwen, B., Savvides, S., De Vos, D., Van Beeumen, J.

(2007) J Mol Biology 374: 883-889

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Marichromatium gracile
Macromolecule	Glutathione amide reductase (protein)
Unique Ligands	CL, FAD, NI

Explore in 3D

2RAB \| pdb_00002rab	Download File View File

Structure of glutathione amide reductase from Chromatium gracile in complex with NAD

Van Petegem, F., De Vos, D., Savvides, S., Vergauwen, B., Van Beeumen, J.

(2007) J Mol Biology 374: 883-889

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Marichromatium gracile
Macromolecule	glutathione amide reductase (protein)
Unique Ligands	CL, FAD, NAD, NI

Explore in 3D

3RRS \| pdb_00003rrs	Download File View File

Crystal structure analysis of cellobiose phosphorylase from Cellulomonas uda

Van Hoorebeke, A., Stout, J., Soetaert, W., Van Beeumen, J., Desmet, T., Savvides, S.

To be published

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cellulomonas uda
Macromolecule	Cellobiose phosphorylase (protein)

Explore in 3D

3RSY \| pdb_00003rsy	Download File View File

Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol

Van Hoorebeke, A., Stout, J., Soetaert, W., Van Beeumen, J., Desmet, T., Savvides, S.

To be published

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Cellulomonas uda
Macromolecule	Cellobiose phosphorylase (protein)
Unique Ligands	GOL, SO4

Explore in 3D

3S4A \| pdb_00003s4a	Download File View File

Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose

Van Hoorebeke, A., Stout, J., Soetaert, W., Van Beeumen, J., Desmet, T., Savvides, S.

To be published

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Cellulomonas uda
Macromolecule	Cellobiose phosphorylase (protein)
Unique branched monosaccharides	BGC