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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Veggi, D."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Neisseria meningitidis (6)
	Homo sapiens (3)
	Neisseria meningitidis MC58 (3)
	Corynebacterium diphtheriae (1)
	Escherichia coli UTI89 (1)
	Mus musculus (1)
	Neisseria meningitidis serogroup B (1)
	Oryctolagus cuniculus (1)
	Streptococcus agalactiae (1)
	Streptococcus pneumoniae TIGR4 (1)

Taxonomy

	Bacteria (14)
	Eukaryota (5)

Experimental Method

	X-RAY DIFFRACTION (10)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (6)
	2015 - 2019 (2)
	2020 - 2024 (5)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (2)

SCOP Classification

	All beta proteins (4)
	Artifacts (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 15 of 15 Structures

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1YS5 \| pdb_00001ys5	Download File View File

Solution structure of the antigenic domain of GNA1870 of Neisseria meningitidis

Cantini, F., Savino, S., Masignani, V., Pizza, M., Scarselli, M., Swennen, E., Romagnoli, G., Veggi, D., Banci, L., Rappuoli, R.

(2006) J Biological Chem 281: 7220-7227

Released	2006-02-07
Method	SOLUTION NMR
Organisms	Neisseria meningitidis
Macromolecule	lipoprotein (protein)

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2KC0 \| pdb_00002kc0	Download File View File

Solution structure of the factor H binding protein

Cantini, F., Veggi, D., Dragonetti, S., Savino, S., Scarselli, M., Romagnoli, G., Pizza, M., Banci, L., Rappuoli, R.

(2009) J Biological Chem 284: 9022-9026

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Neisseria meningitidis
Macromolecule	lipoprotein (protein)

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2KXI \| pdb_00002kxi	Download File View File

Solution NMR structure of the apoform of NarE (NMB1343)

Koehler, C., Carlier, L., Veggi, D., Soriani, M., Pizza, M., Boelens, R., Bonvin, A.M.J.J.

To be published

Released	2011-03-02
Method	SOLUTION NMR
Organisms	Neisseria meningitidis MC58
Macromolecule	Uncharacterized protein (protein)

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2L4O \| pdb_00002l4o	Download File View File

Solution structure of the Streptococcus pneumoniae RrgB pilus backbone D1 domain

Gentile, M.A., Melchiorre, S., Emolo, C., Moschioni, M., Gianfaldoni, C., Pancotto, L., Ferlenghi, I., Scarselli, M., Pansegrau, W., Veggi, D., Merola, M., Cantini, F., Ruggiero, P., Banci, L., Masignani, V.

To be published

Released	2011-03-02
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	Cell wall surface anchor family protein (protein)

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2LFU \| pdb_00002lfu	Download File View File

The structure of a N. meningitides protein targeted for vaccine development

Esposito, V., Musi, V., De Chiara, C., Kelly, G., Veggi, D., Pizza, M., Pastore, A.

(2011) J Biological Chem 286: 41767-41775

Released	2011-10-19
Method	SOLUTION NMR
Organisms	Neisseria meningitidis
Macromolecule	Gna2132 (protein)

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2YPV \| pdb_00002ypv	Download File View File

Crystal structure of the Meningococcal vaccine antigen factor H binding protein in complex with a bactericidal antibody

Malito, E., Veggi, D., Bottomley, M.J.

(2013) Proc Natl Acad Sci U S A 110: 3304

Released	2013-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus Neisseria meningitidis MC58
Macromolecule	FAB 12C1 (protein) LIPOPROTEIN (protein)
Unique Ligands	EDO

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3KVD \| pdb_00003kvd	Download File View File

Crystal structure of the Neisseria meningitidis Factor H binding protein, fHbp (GNA1870) at 2.0 A resolution

Cendron, L., Veggi, D., Girardi, E., Zanotti, G.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 531-535

Released	2010-12-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis
Macromolecule	Lipoprotein (protein)

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4E9L \| pdb_00004e9l	Download File View File

FdeC, a Novel Broadly Conserved Escherichia coli Adhesin Eliciting Protection against Urinary Tract Infections

Spraggon, G., Nesta, B., Alteri, C., Gomes Moriel, D., Rosini, R., Veggi, D., Smith, S., Bertoldi, I., Pastorello, I., Ferlenghi, I., Fontana, M.R., Frankel, G., Mobley, H.L.T., Rappuoli, R., Pizza, M., Serino, L., Soriana, M.

(2012) mBio 3:

Released	2012-04-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli UTI89
Macromolecule	Attaching and effacing protein, pathogenesis factor (protein)

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5M63 \| pdb_00005m63	Download File View File

Crystal structure of group B Streptococcus type III DP2 oligosaccharide bound to Fab NVS-1-19-5

Carboni, F., Adamo, R., Veggi, D., Rappuoli, R., Malito, E., Margarit, I.R., Berti, F.

(2017) Proc Natl Acad Sci U S A 114: 5017-5022

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Oryctolagus cuniculus
Macromolecule	H chain of Fab NVS-1-19-5 (protein) L chain of Fab NVS-1-19-5 (protein)
Unique Ligands	7GW, EDO
Unique branched monosaccharides	BGC, GAL, NAG, SIA

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6H2Y \| pdb_00006h2y	Download File View File

human Fab 1E6 bound to fHbp variant 3 from Neisseria meningitidis serogroup B

Veggi, D., Bianchi, F., Cozzi, R., Malito, E., Bottomley, M.J.

(2019) FASEB J 33: 12099-12111

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Neisseria meningitidis
Macromolecule	Heavy chain (protein) Light chain (protein) Lipoprotein GNA1870 (protein)
Unique Ligands	EDO, P33, PEG, PG4

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6XZW \| pdb_00006xzw	Download File View File

Crystal structure of the meningococcal vaccine antigen fHbp in complex with a cross-reactive human Fab.

Veggi, D., Cozzi, R.

(2020) PLoS Pathog 16: e1008882-e1008882

Released	2020-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Neisseria meningitidis MC58
Macromolecule	Fab 4B3 (heavy chain) (protein) Fab 4B3 (light chain) (protein) Lipoprot_C domain-containing protein (protein)
Unique Ligands	EDO

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7NRU \| pdb_00007nru	Download File View File

Structure of a natural chimera of meningococcal factor H binding protein belonging to NL096 strain

Veggi, D., Malito, E., Bottomley, M.J.

(2022) Comput Struct Biotechnol J 20: 2070-2081

Released	2022-06-08
Method	X-RAY DIFFRACTION 1.21998357323 Å
Organisms	Neisseria meningitidis
Macromolecule	Factor H binding protein variant 1-2,3.x (protein)
Unique Ligands	SO4

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7O4W \| pdb_00007o4w	Download File View File

Crystal structure of diphtheria toxin mutant CRM197 with a disulphide bond replaced by a Cys-Acetone-Cys bridge

Veggi, D., Dello Iacono, L.

(2022) Chem Sci 13: 2440-2449

Released	2022-04-06
Method	X-RAY DIFFRACTION 2.03002061079 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin (protein)
Unique Ligands	4Y8, ACT, EDO, PGE

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8BK2 \| pdb_00008bk2	Download File View File

X-ray structure of meningococcal factor H binding protein variant 2 in complex with a specific and bactericidal human monoclonal antibody 1B1

Veggi, D., Bottomley, J.M.

(2024) FASEB Bioadv 6: 235-248

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens Neisseria meningitidis serogroup B
Macromolecule	Fab Heavy chain (protein) Fab light Chains (protein) Factor H-binding protein (protein)
Unique Ligands	EDO, IMD, MPD, P33, P6G, SO4

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8C27 \| pdb_00008c27	Download File View File

Domain 3 of Group B Streptococcus pilus protein as scaffold for the display of foreign epitopes

Veggi, D., Cappelli, L., Cozzi, R.

(2024) FASEB J 38: e23326-e23326

Released	2024-01-10
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Streptococcus agalactiae
Macromolecule	PI-2a backbone protein (protein)
Unique Ligands	EDO

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YS5 | pdb_00001ys5

Solution structure of the antigenic domain of GNA1870 of Neisseria meningitidis

2KC0 | pdb_00002kc0

Solution structure of the factor H binding protein

2KXI | pdb_00002kxi

Solution NMR structure of the apoform of NarE (NMB1343)

2L4O | pdb_00002l4o

Solution structure of the Streptococcus pneumoniae RrgB pilus backbone D1 domain

2LFU | pdb_00002lfu

The structure of a N. meningitides protein targeted for vaccine development

2YPV | pdb_00002ypv

Crystal structure of the Meningococcal vaccine antigen factor H binding protein in complex with a bactericidal antibody

3KVD | pdb_00003kvd

Crystal structure of the Neisseria meningitidis Factor H binding protein, fHbp (GNA1870) at 2.0 A resolution

4E9L | pdb_00004e9l

FdeC, a Novel Broadly Conserved Escherichia coli Adhesin Eliciting Protection against Urinary Tract Infections

5M63 | pdb_00005m63

Crystal structure of group B Streptococcus type III DP2 oligosaccharide bound to Fab NVS-1-19-5

6H2Y | pdb_00006h2y

human Fab 1E6 bound to fHbp variant 3 from Neisseria meningitidis serogroup B

6XZW | pdb_00006xzw

Crystal structure of the meningococcal vaccine antigen fHbp in complex with a cross-reactive human Fab.

7NRU | pdb_00007nru

Structure of a natural chimera of meningococcal factor H binding protein belonging to NL096 strain

7O4W | pdb_00007o4w

Crystal structure of diphtheria toxin mutant CRM197 with a disulphide bond replaced by a Cys-Acetone-Cys bridge

8BK2 | pdb_00008bk2

X-ray structure of meningococcal factor H binding protein variant 2 in complex with a specific and bactericidal human monoclonal antibody 1B1

8C27 | pdb_00008c27

Domain 3 of Group B Streptococcus pilus protein as scaffold for the display of foreign epitopes

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YS5 | pdb_00001ys5

2KC0 | pdb_00002kc0

2KXI | pdb_00002kxi

2L4O | pdb_00002l4o

2LFU | pdb_00002lfu

2YPV | pdb_00002ypv

3KVD | pdb_00003kvd

4E9L | pdb_00004e9l

5M63 | pdb_00005m63

6H2Y | pdb_00006h2y

6XZW | pdb_00006xzw

7NRU | pdb_00007nru

7O4W | pdb_00007o4w

8BK2 | pdb_00008bk2

8C27 | pdb_00008c27