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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Veron, M."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Dictyostelium discoideum (11)
	Homo sapiens (3)
	Drosophila melanogaster (1)
	Mus musculus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (14)
	Eukaryota (eukaryotes) (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (7)
	2.5 - 3.0 (4)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (2)
	2000 - 2004 (6)
	2005 - 2009 (4)

Enzyme Classification Name

Transferases (13)

Symmetry Type

	Dihedral (13)
	Asymmetric (2)
	Cyclic (1)

SCOP Classification

Alpha and beta proteins (a+b) (13)

AllSelected

1 to 16 of 16 Structures

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1BUX \| pdb_00001bux	Download File View File

3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE

Xu, Y., Schneider, B., Deville-Bonne, D., Veron, M., Janin, J.

(1998) J Biological Chem 273: 28773-28778

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)
Unique Ligands	PPS

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1F3F \| pdb_00001f3f	Download File View File

STRUCTURE OF THE H122G NUCLEOSIDE DIPHOSPHATE KINASE / D4T-TRIPHOSPHATE.MG COMPLEX

Meyer, P., Schneider, B., Sarfati, S., Deville-Bonne, D., Guerreiro, C., Boretto, J., Janin, J., Veron, M., Canard, B.

(2000) EMBO J 19: 3520-3529

Released	2000-09-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Dictyostelium discoideum
Macromolecule	PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE) (protein)
Unique Ligands	D4D, D4T, MG, PO4

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1F6T \| pdb_00001f6t	Download File View File

STRUCTURE OF THE NUCLEOSIDE DIPHOSPHATE KINASE/ALPHA-BORANO(RP)-TDP.MG COMPLEX

Guerreiro, C., Boretto, J., Janin, J., Veron, M., Canard, B., Schneider, B., Sarfati, S., Deville-Bonne, D.

(2000) EMBO J 19: 3520-3529

Released	2000-09-13
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Dictyostelium discoideum
Macromolecule	PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE) (protein)
Unique Ligands	MG, TBD

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1HHQ \| pdb_00001hhq	Download File View File

Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase

Schneider, B., Babolat, M., Xu, Y.W., Janin, J., Veron, M., Deville-Bonne, D.

(2001) Eur J Biochem 268: 1964

Released	2001-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)
Unique Ligands	SO4

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1LEO \| pdb_00001leo	Download File View File

P100S NUCLEOSIDE DIPHOSPHATE KINASE

Janin, J., Xu, Y., Veron, M.

(1996) J Biological Chem 271: 19928-19934

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)

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1MN7 \| pdb_00001mn7	Download File View File

NDP kinase mutant (H122G;N119S;F64W) in complex with aBAZTTP

gallois-montbrun, s., schneider, b., chen, y., giacomoni-fernandes, v., mulard, l., morera, s., janin, j., deville-bonne, d., veron, m.

(2002) J Biological Chem 277: 39953-39959

Released	2002-10-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Dictyostelium discoideum
Macromolecule	NDP kinase (protein)
Unique Ligands	ABT, MG

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1MN9 \| pdb_00001mn9	Download File View File

NDP kinase mutant (H122G) complex with RTP

Gallois-montbrun, S., Chen, Y., Dutartre, H., Morera, S., Guerreiro, C., Mulard, L., Schneider, B., Janin, J., Canard, B., Veron, M., Deville-bonne, D.

(2003) Mol Pharmacol 63: 538-546

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Dictyostelium discoideum
Macromolecule	NDP kinase (protein)
Unique Ligands	MG, RTP

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1NDK \| pdb_00001ndk	Download File View File

X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

Janin, J., Dumas, C., Morera, S., Lascu, I., Veron, M.

(1992) EMBO J 11: 3203-3208

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)

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1NDL \| pdb_00001ndl	Download File View File

THE AWD NUCLEOTIDE DIPHOSPHATE KINASE FROM DROSOPHILA

Janin, J., Chiadmi, M., Dumas, C., Lascu, I., Lebras, G., Morera, S., Veron, M.

(1993) Structure 1: 283-293

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)

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1NDP \| pdb_00001ndp	Download File View File

ADENOSINE 5'-DIPHOSPHATE BINDING AND THE ACTIVE SITE OF NUCLEOSIDE DIPHOSPHATE KINASE

Janin, J., Morera, S., Dumas, C., Lascu, I., Lebras, G., Veron, M.

(1994) Biochemistry 33: 459-467

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)
Unique Ligands	ADP, MG

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1NPK \| pdb_00001npk	Download File View File

REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION

Janin, J., Morera, S., Lebras, G., Lascu, I., Veron, M.

(1994) J Mol Biology 243: 873-890

Released	1994-11-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)

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1S5Z \| pdb_00001s5z	Download File View File

NDP kinase in complex with adenosine phosphonoacetic acid

Chen, Y., Morera, S., Pasti, C., Angusti, A., Solaroli, N., Veron, M., Janin, J., Manfredini, S., Deville-Bonne, D.

(2005) Med Chem 1: 529-536

Released	2005-02-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dictyostelium discoideum
Macromolecule	Nucleoside diphosphate kinase, cytosolic (protein)
Unique Ligands	PO4, SON

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1UCN \| pdb_00001ucn	Download File View File

X-ray structure of human nucleoside diphosphate kinase A complexed with ADP at 2 A resolution

Chen, Y., Gallois-Montbrun, S., Schneider, B., Veron, M., Morera, S., Deville-Bonne, D., Janin, J.

(2003) J Mol Biology 332: 915-926

Released	2003-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	nucleoside diphosphate kinase A (protein)
Unique Ligands	ADP, CA, PO4, TRS

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2JVX \| pdb_00002jvx	Download File View File

Solution Structure of human NEMO zinc finger

Cordier, F., Vinolo, E., Veron, M., Delepierre, M., Agou, F.

(2008) J Mol Biology 377: 1419-1432

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NF-kappa-B essential modulator (protein)
Unique Ligands	ZN

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2JVY \| pdb_00002jvy	Download File View File

Solution Structure of the EDA-ID-related C417F mutant of human NEMO zinc finger

Cordier, F., Vinolo, E., Veron, M., Delepierre, M., Agou, F.

(2008) J Mol Biology 377: 1419-1432

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NF-kappa-B essential modulator (protein)
Unique Ligands	ZN

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2V4H \| pdb_00002v4h	Download File View File

NEMO CC2-LZ domain - 1D5 DARPin complex

Grubisha, O., Duquerroy, S., Cordier, F., Haouz, A., Delepierre, M., Veron, M., Agou, F.

(2010) J Mol Biology 395: 89

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus synthetic construct
Macromolecule	1D5 DARPIN (protein) NF-KAPPA-B ESSENTIAL MODULATOR (protein)

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1BUX | pdb_00001bux

3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE

1F3F | pdb_00001f3f

STRUCTURE OF THE H122G NUCLEOSIDE DIPHOSPHATE KINASE / D4T-TRIPHOSPHATE.MG COMPLEX

1F6T | pdb_00001f6t

STRUCTURE OF THE NUCLEOSIDE DIPHOSPHATE KINASE/ALPHA-BORANO(RP)-TDP.MG COMPLEX

1HHQ | pdb_00001hhq

Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase

1LEO | pdb_00001leo

P100S NUCLEOSIDE DIPHOSPHATE KINASE

1MN7 | pdb_00001mn7

NDP kinase mutant (H122G;N119S;F64W) in complex with aBAZTTP

1MN9 | pdb_00001mn9

NDP kinase mutant (H122G) complex with RTP

1NDK | pdb_00001ndk

X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

1NDL | pdb_00001ndl

THE AWD NUCLEOTIDE DIPHOSPHATE KINASE FROM DROSOPHILA

1NDP | pdb_00001ndp

ADENOSINE 5'-DIPHOSPHATE BINDING AND THE ACTIVE SITE OF NUCLEOSIDE DIPHOSPHATE KINASE

1NPK | pdb_00001npk

REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION

1S5Z | pdb_00001s5z

NDP kinase in complex with adenosine phosphonoacetic acid

1UCN | pdb_00001ucn

X-ray structure of human nucleoside diphosphate kinase A complexed with ADP at 2 A resolution

2JVX | pdb_00002jvx

Solution Structure of human NEMO zinc finger

2JVY | pdb_00002jvy

Solution Structure of the EDA-ID-related C417F mutant of human NEMO zinc finger

2V4H | pdb_00002v4h

NEMO CC2-LZ domain - 1D5 DARPin complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BUX | pdb_00001bux

1F3F | pdb_00001f3f

1F6T | pdb_00001f6t

1HHQ | pdb_00001hhq

1LEO | pdb_00001leo

1MN7 | pdb_00001mn7

1MN9 | pdb_00001mn9

1NDK | pdb_00001ndk

1NDL | pdb_00001ndl

1NDP | pdb_00001ndp

1NPK | pdb_00001npk

1S5Z | pdb_00001s5z

1UCN | pdb_00001ucn

2JVX | pdb_00002jvx

2JVY | pdb_00002jvy

2V4H | pdb_00002v4h