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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Young, I.G."

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Search Summary

This query matches 1,250 Structures.

Refinements

Structure Determination Methodology

experimental (1,250)

Scientific Name of Source Organism

	synthetic construct (386)
	Escherichia coli (222)
	Homo sapiens (220)
	Saccharomyces cerevisiae (176)
	Escherichia coli K-12 (166)
	Saccharomyces cerevisiae S288C (121)
	Sus scrofa (93)
	Thermus thermophilus HB8 (66)
	Mycobacterium tuberculosis H37Rv (45)
	Thermus thermophilus (38)

More...

Taxonomy

	Bacteria (603)
	Eukaryota (546)
	other sequences (389)
	Duplodnaviria (86)
	Varidnaviria (45)
	Archaea (31)
	Riboviria (16)
	Eukaryota (eukaryotes) (6)
	unclassified sequences (4)
	Viruses incertae sedis (1)

Experimental Method

	ELECTRON MICROSCOPY (758)
	X-RAY DIFFRACTION (471)
	SOLUTION NMR (21)

Polymer Entity Type

	Protein (1,250)
	DNA (917)
	RNA (650)
	NA-hybrid (5)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (29)
	2.0 - 2.5 (49)
	2.5 - 3.0 (179)
	3.0 - 3.5 (356)
	3.5 - 4.0 (305)
	4.0 - 4.5 (160)
	> 4.5 (149)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (40)
	2005 - 2009 (92)
	2010 - 2014 (119)
	2015 - 2019 (282)
	2020 - 2024 (678)
	2025 - 2029 (31)

Enzyme Classification Name

	Transferases (1,250)
	Hydrolases (212)
	Isomerases (56)
	Oxidoreductases (4)

Symmetry Type

	Asymmetric (1,225)
	Cyclic (27)
	Dihedral (4)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (66)
	All alpha proteins (84)
	Low resolution protein structures (27)
	Multi-domain proteins (alpha and beta) (77)
	All beta proteins (51)
	Small proteins (42)
	Alpha and beta proteins (a/b) (38)
	Artifacts (6)
	Peptides (1)

AllSelected

1 to 25 of 1,250 Structures

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1A1D \| pdb_00001a1d	Download File View File

YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY

Krapp, S., Kelly, G., Reischl, J., Weinzierl, R., Matthews, S.

(1998) Nat Struct Biol 5: 110-114

Released	1999-03-02
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	RNA POLYMERASE (protein)

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1ARO \| pdb_00001aro	Download File View File

T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME

Steitz, T., Jeruzalmi, D.

(1998) EMBO J 17: 4101-4113

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia phage T7
Macromolecule	T7 LYSOZYME (protein) T7 RNA POLYMERASE (protein)
Unique Ligands	HG

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1BDF \| pdb_00001bdf	Download File View File

STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE ALPHA SUBUNIT N-TERMINAL DOMAIN

Zhang, G., Darst, S.A.

(1998) Science 281: 262-266

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	RNA POLYMERASE ALPHA SUBUNIT (protein)

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1CEZ \| pdb_00001cez	Download File View File

CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX

Cheetham, G.M.T., Jeruzalmi, D., Steitz, T.A.

(1999) Nature 399: 80-83

Released	1999-05-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia phage T7
Macromolecule	PROTEIN (BACTERIOPHAGE T7 RNA POLYMERASE) (protein) DNA (5'-D(PTPAPAPTPAPCPGPAPCPTPCPAPCPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPTPAPGPTPGPAPGPTPCPGPTPAPTPTPA)-3') (nucleic acid)

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1COO \| pdb_00001coo	Download File View File

THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT

Jeon, Y.H., Negishi, T., Shirakawa, M., Yamazaki, T., Fujita, N., Ishihama, A., Kyogoku, Y.

(1995) Science 270: 1495-1497

Released	1996-03-08
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	RNA POLYMERASE ALPHA SUBUNIT (protein)

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1DOQ \| pdb_00001doq	Download File View File

THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS

Wada, T., Yamazaki, T., Kyogoku, Y.

(2000) J Biological Chem 275: 16057-16063

Released	2000-01-05
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	RNA POLYMERASE ALPHA SUBUNIT (protein)

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1DZF \| pdb_00001dzf	Download File View File

RPB5 from S.cerevisiae

Todone, F., Weinzierl, R.O.J., Brick, P., Onesti, S.

(2000) Proc Natl Acad Sci U S A 97: 6306

Released	2000-06-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 (protein)

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1EF4 \| pdb_00001ef4	Download File View File

SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Mackereth, C.D., Arrowsmith, C.H., Edwards, A.M., Mcintosh, L.P., Northeast Structural Genomics Consortium (NESG)

(2000) Proc Natl Acad Sci U S A 97: 6316-6321

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	ZN

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1EIK \| pdb_00001eik	Download File View File

Solution Structure of RNA Polymerase Subunit RPB5 from Methanobacterium Thermoautotrophicum

Yee, A., Booth, V., Dharamsi, A., Engel, A., Edwards, A.M., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

(2000) Proc Natl Acad Sci U S A 97: 6311-6315

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	RNA POLYMERASE SUBUNIT RPB5 (protein)

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1GO3 \| pdb_00001go3	Download File View File

Structure of an archeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex

Todone, F., Brick, P., Werner, F., Weinzierl, R.O.J., Onesti, S.

(2001) Mol Cell 8: 1137-1143

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA-DIRECTED RNA POLYMERASE SUBUNIT E (protein) DNA-DIRECTED RNA POLYMERASE SUBUNIT F (protein)

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1H38 \| pdb_00001h38	Download File View File

Structure of a T7 RNA polymerase elongation complex at 2.9A resolution

Tahirov, T.H., Temyakov, D., Anikin, M., Patlan, V., McAllister, W.T., Vassylyev, D.G., Yokoyama, S.

(2002) Nature 420: 43

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia phage T7
Macromolecule	DNA-DIRECTED RNA POLYMERASE (protein) 5'-D(GPGPGPAPAPTPCPGPAPCP APTPCPGPCPCPGPC)-3' (nucleic acid) 5'-D(GPTPCPGPAPTPTPCPCPCP)-3' (nucleic acid) 5'-R(APAPCPUPGPCPGPGPCPGP APU)-3' (nucleic acid)

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1HMJ \| pdb_00001hmj	Download File View File

SOLUTION STRUCTURE OF RNA POLYMERASE SUBUNIT H

Thiru, A., Hodach, M., Eloranta, J., Kostourou, V., Weinzierl, R.

(1999) J Mol Biology 287: 753-760

Released	1999-04-05
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii
Macromolecule	PROTEIN (SUBUNIT H) (protein)

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1HQM \| pdb_00001hqm	Download File View File

CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION

Minakhin, L., Bhagat, S., Brunning, A., Campbell, E.A., Darst, S.A., Ebright, R.H., Severinov, K.

(2001) Proc Natl Acad Sci U S A 98: 892-897

Released	2001-02-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus aquaticus
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) DNA-directed RNA polymerase subunit beta (protein) DNA-directed RNA polymerase subunit beta' (protein) DNA-directed RNA polymerase subunit omega (protein)
Unique Ligands	MG, ZN

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1I3Q \| pdb_00001i3q	Download File View File

RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION

Cramer, P., Bushnell, D.A., Kornberg, R.D.

(2001) Science 292: 1863-1876

Released	2001-04-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10
Unique Ligands	MG, ZN

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1I50 \| pdb_00001i50	Download File View File

RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION

Cramer, P., Bushnell, D.A., Kornberg, R.D.

(2001) Science 292: 1863-1876

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10
Unique Ligands	MN, ZN

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1I6H \| pdb_00001i6h	Download File View File

RNA POLYMERASE II ELONGATION COMPLEX

Gnatt, A.L., Cramer, P., Kornberg, R.D.

(2001) Science 292: 1876-1882

Released	2001-04-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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1I6V \| pdb_00001i6v	Download File View File

THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX

Campbell, E.A., Korzheva, N., Mustaev, A., Murakami, K., Goldfarb, A., Darst, S.A.

(2001) Cell 104: 901-912

Released	2001-04-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus aquaticus
Macromolecule	DNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MG, RFP, ZN

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1IW7 \| pdb_00001iw7	Download File View File

Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Nature 417: 712-719

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus
Macromolecule	RNA polymerase alpha subunit (protein) RNA polymerase beta subunit (protein) RNA polymerase omega subunit (protein) RNA polymerase sigma-70 subunit (protein)
Unique Ligands	MG, PB

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1K83 \| pdb_00001k83	Download File View File

Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin

Bushnell, D.A., Cramer, P., Kornberg, R.D.

(2002) Proc Natl Acad Sci U S A 99: 1218

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Amanita phalloides Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11
Unique Ligands	MN, ZN

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1L9U \| pdb_00001l9u	Download File View File

THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME AT 4 A RESOLUTION

Murakami, K.S., Masuda, S., Darst, S.A.

(2002) Science 296: 1280-1284

Released	2002-05-22
Method	X-RAY DIFFRACTION 4 Å
Organisms	Thermus aquaticus
Macromolecule	RNA POLYMERASE, ALPHA SUBUNIT (protein) RNA POLYMERASE, BETA SUBUNIT (protein) RNA POLYMERASE, BETA-PRIME SUBUNIT (protein) RNA POLYMERASE, OMEGA SUBUNIT (protein) SIGMA FACTOR SIGA (protein)
Unique Ligands	MG, ZN

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1L9Z \| pdb_00001l9z	Download File View File

Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution

Murakami, K.S., Masuda, S., Campbell, E.A., Muzzin, O., Darst, S.A.

(2002) Science 296: 1285-1290

Released	2002-05-31
Method	X-RAY DIFFRACTION 6.5 Å
Organisms	Thermus aquaticus
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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1LB2 \| pdb_00001lb2	Download File View File

Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA

Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.

(2002) Science 297: 1562-1566

Released	2002-09-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) DNA-directed RNA polymerase alpha chain (protein) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid)
Unique Ligands	CMP

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1MSW \| pdb_00001msw	Download File View File

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

Yin, Y.W., Steitz, T.A.

(2002) Science 298: 1387-1395

Released	2002-11-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia phage T7
Macromolecule	DNA-directed RNA polymerase (protein) Non-Template DNA (nucleic acid) RNA message (nucleic acid) Template DNA (nucleic acid)