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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yuzawa, S."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Pyrobaculum neutrophilum V24Sta (6)
	Aromatoleum evansii (4)
	Sulfurisphaera tokodaii str. 7 (3)
	Xenopus laevis (3)
	Streptomyces collinus (1)

Taxonomy

	Archaea (9)
	Bacteria (5)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

	Protein (17)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (14)

Enzyme Classification Name

	Oxidoreductases (8)
	Hydrolases (6)
	Lyases (6)

Symmetry Type

	Asymmetric (7)
	Dihedral (10)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 17 of 17 Structures

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1YVP	Download File View File

Ro autoantigen complexed with RNAs

Stein, A.J., Fuchs, G., Fu, C., Wolin, S.L., Reinisch, K.M.

(2005) Cell 121: 529-539

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xenopus laevis
Macromolecule	60-kDa SS-A/Ro ribonucleoprotein (protein) Y RNA sequence, first strand (nucleic acid) Y RNA sequence, second strand (nucleic acid)
Unique Ligands	ACT, MG

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1YVR	Download File View File

Ro autoantigen

Stein, A.J., Fuchs, G., Fu, C., Wolin, S.L., Reinisch, K.M.

(2005) Cell 121: 529-539

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xenopus laevis
Macromolecule	60-kDa SS-A/Ro ribonucleoprotein (protein)

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2I91	Download File View File

60kDa Ro autoantigen in complex with a fragment of misfolded RNA

Reinisch, K.M., Stein, A.J.

(2006) Nat Struct Mol Biol 13: 1002-1009

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Xenopus laevis
Macromolecule	60 kDa SS-A/Ro ribonucleoprotein (protein) 5'-R(CGPGPUPAPGPGPCPUPUPUPUPCPAPA)-3' (nucleic acid) 5'-R(GPCPCPUPAPCPCP*C)-3' (nucleic acid)
Unique Ligands	ACT, MG

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3HZZ	Download File View File

2.4 Angstrom Crystal Structure of Streptomyces collinus crotonyl CoA carboxylase/reductase

Scarsdale, J.N., Musayev, F.N., Wright, H.T.

To be published

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces collinus
Macromolecule	Crotonyl CoA reductase (protein)
Unique Ligands	SO4

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3PER	Download File View File

Crystal Structure of BoxB with phosphate bound to the diiron center

Weinert, T., Rather, L.J., Fuchs, G., Ermler, U.

(2011) J Biological Chem 286: 29241-29248

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aromatoleum evansii
Macromolecule	Benzoyl-CoA oxygenase component B (protein)
Unique Ligands	FE, GOL, OH, PO4

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3PF7	Download File View File

Crystal structure of BoxB with malonate bound to the diiron center

Weinert, T., Rather, L.J., Fuchs, G., Ermler, U.

(2011) J Biological Chem 286: 29241-29248

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.903 Å
Organisms	Aromatoleum evansii
Macromolecule	Benzoyl-CoA oxygenase component B (protein)
Unique Ligands	CL, FE, MLA, OH

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3PM5	Download File View File

Crystal Structure of BoxB in mixed valent state with bound benzoyl-CoA

Weinert, T., Rather, L., Fuchs, G., Ermler, U.

(2011) J Biological Chem 286: 29241-29248

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aromatoleum evansii
Macromolecule	Benzoyl-CoA oxygenase component B (protein)
Unique Ligands	BYC, CL, FE, GOL, PGE, PGO, SO4

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3Q1G	Download File View File

Crystal Structure of BoxB crystallized with PEG

Weinert, T., Rather, L., Fuchs, G., Ermler, U.

(2011) J Biological Chem 286: 29241-29248

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aromatoleum evansii
Macromolecule	Benzoyl-CoA oxygenase component B (protein)
Unique Ligands	CL, FE, OH, SO4

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3T2B	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, ligand free

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	MG

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3T2C	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, DHAP-bound form

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	13P, MG

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3T2D	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, FBP-bound form

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	MG, P6F

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3T2E	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, F6P-bound form

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	F6R, MG

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3T2F	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, soaked with EDTA and DHAP

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	MG

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3T2G	Download File View File

Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, Y229F variant with DHAP

Du, J., Say, R., Lue, W., Fuchs, G., Einsle, O.

(2011) Nature 478: 534-537

Released	2011-10-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pyrobaculum neutrophilum V24Sta
Macromolecule	Fructose-1,6-bisphosphate aldolase/phosphatase (protein)
Unique Ligands	13P, MG

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4DPK	Download File View File

Structure of malonyl-coenzyme A reductase from crenarchaeota

Demmer, U., Warkentin, E., Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.

(2013) J Biological Chem 288: 6363-6370

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	Malonyl-CoA/succinyl-CoA reductase (protein)
Unique Ligands	PO4

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4DPL	Download File View File

Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with NadP

Demmer, U., Warkentin, E., Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.

(2013) J Biological Chem 288: 6363-6370

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	Malonyl-CoA/succinyl-CoA reductase (protein)
Unique Ligands	NAP, UNL

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4DPM	Download File View File

Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with CoA

Demmer, U., Warkentin, E., Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.

(2013) J Biological Chem 288: 6363-6370

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	Malonyl-CoA/succinyl-CoA reductase (protein)
Unique Ligands	COA, MG