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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhang, Y.M."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (7)
	Arabidopsis thaliana (5)
	Escherichia coli (3)
	Influenza A virus (A/Aichi/2/1968(H3N2)) (2)
	Conus textile (1)
	Mus musculus (1)
	Staphylococcus aureus (1)
	Streptococcus pneumoniae (1)
	Thermus thermophilus (1)

Taxonomy

	Eukaryota (13)
	Bacteria (6)
	Riboviria (2)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (4)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (3)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (12)
	mpstruc (6)
	OPM (7)
	MemProtMD (5)

Symmetry Type

	Cyclic (15)
	Asymmetric (6)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 21 of 21 Structures

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1G5X \| pdb_00001g5x	Download File View File

The Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase I

Zhang, Y.M., Rao, M.S., Heath, R.J., Price, A.C., Olson, A.J., Rock, C.O., White, S.W.

(2001) J Biological Chem 276: 8231-8238

Released	2000-11-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL ACYL CARRIER PROTEIN SYNTHASE I (protein)

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1NYK \| pdb_00001nyk	Download File View File

Crystal Structure of the Rieske protein from Thermus thermophilus

Hunsicker-Wang, L.M., Heine, A., Chen, Y., Luna, E.P., Todaro, T., Zhang, Y.M., Williams, P.A., McRee, D.E., Hirst, J., Stout, C.D., Fee, J.A.

(2003) Biochemistry 42: 7303-7317

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Thermus thermophilus
Macromolecule	Rieske iron-sulfur protein (protein)
Unique Ligands	FES, MG

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1P3R \| pdb_00001p3r	Download File View File

Crystal structure of the phosphotyrosin binding domain(PTB) of mouse Disabled 1(Dab1)

Yun, M., Keshvara, L., Park, C.G., Zhang, Y.M., Dickerson, J.B., Zheng, J., Rock, C.O., Curran, T., Park, H.W.

(2003) J Biological Chem 278: 36572-36581

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Disabled homolog 2 (protein)

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2ALM \| pdb_00002alm	Download File View File

Crystal structure analysis of a mutant beta-ketoacyl-[acyl carrier protein] synthase II from Streptococcus pneumoniae

Zhang, Y.M., Hurlbert, J., White, S.W., Rock, C.O.

(2006) J Biological Chem 281: 17390-17399

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptococcus pneumoniae
Macromolecule	3-oxoacyl-(acyl-carrier-protein) synthase II (protein)
Unique Ligands	MG

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2AQ7 \| pdb_00002aq7	Download File View File

Structure-activity relationships at the 5-posiiton of thiolactomycin: an intact 5(R)-isoprene unit is required for activity against the condensing enzymes from Mycobacterium tuberculosis and Escherichia coli

Kim, P., Zhang, Y.M., Shenoy, G., Nguyen, Q.A., Boshoff, H.I., Manjunatha, U.H., Goodwin, M.B., Lonsdale, J., Price, A.C., Miller, D.J.

(2006) J Med Chem 49: 159-171

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase I (protein)
Unique Ligands	TL5

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2AQB \| pdb_00002aqb	Download File View File

Structure-activity relationships at the 5-position of thiolactomycin: an intact 5(R)-isoprene unit is required for activity against the condensing enzymes from Mycobacterium tuberculosis and Escherchia coli

Kim, P., Zhang, Y.M., Shenoy, G., Nguyen, Q.A., Boshoff, H.I., Manjunatha, U.H., Goodwin, M.B., Lonsdale, J., Price, A.C., Miller, D.J.

(2006) J Med Chem 49: 159-171

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase I (protein)
Unique Ligands	TL6

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2GQD \| pdb_00002gqd	Download File View File

The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus

Miller, D.J., White, S.W., Zhang, Y.M., Rock, C.O.

To be published

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)

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7CQ5 \| pdb_00007cq5	Download File View File

Structure of the human CLCN7-OSTM1 complex with ATP

Yang, G.H., Lu, Y.M., Zhang, Y.M., Jia, Y.T., Li, X.M., Lei, J.L.

To be published

Released	2020-11-11
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens
Macromolecule	H(+)/Cl(-) exchange transporter 7 (protein) Osteopetrosis-associated transmembrane protein 1 (protein)
Unique Ligands	ATP, CL
Unique branched monosaccharides	NAG

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7CQ6 \| pdb_00007cq6	Download File View File

Structure of the human CLCN7-OSTM1 complex

Yang, G.H., Lu, Y.M., Zhang, Y.M., Jia, Y.T., Li, X.M., Lei, J.L.

To be published

Released	2020-11-11
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	H(+)/Cl(-) exchange transporter 7 (protein) Osteopetrosis-associated transmembrane protein 1 (protein)
Unique Ligands	CL
Unique branched monosaccharides	NAG

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7CQ7 \| pdb_00007cq7	Download File View File

Structure of the human CLCN7-OSTM1 complex with ADP

Yang, G.H., Lu, Y.M., Zhang, Y.M., Jia, Y.T., Li, X.M., Lei, J.L.

To be published

Released	2020-11-11
Method	ELECTRON MICROSCOPY 3.55 Å
Organisms	Homo sapiens
Macromolecule	H(+)/Cl(-) exchange transporter 7 (protein) Osteopetrosis-associated transmembrane protein 1 (protein)
Unique Ligands	ADP, CL
Unique branched monosaccharides	NAG

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7FCV \| pdb_00007fcv	Download File View File

Cryo-EM structure of the Potassium channel AKT1 mutant from Arabidopsis thaliana

Yang, G.H., Lu, Y.M., Jia, Y.T., Zhang, Y.M., Tang, R.F., Xu, X., Li, X.M., Lei, J.L.

(2022) Nat Commun 13: 5682-5682

Released	2022-11-09
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Potassium channel AKT1 (protein)
Unique Ligands	K, PTY

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7VR1 \| pdb_00007vr1	Download File View File

Cryo-EM structure of the ATP-binding cassette sub-family D member 1 from Homo sapiens

Yang, G.H., Jia, Y.T., Zhang, Y.M.

(2022) Elife 11:

Released	2022-10-26
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)

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7WSW \| pdb_00007wsw	Download File View File

Cryo-EM structure of the Potassium channel AKT1 from Arabidopsis thaliana

Yang, G.H., Lu, Y.M., Zhang, Y.M., Jia, Y.T., Li, X.M., Lei, J.L.

(2022) Nat Commun 13: 5682-5682

Released	2022-11-09
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Potassium channel AKT1 (protein)
Unique Ligands	K, PTY

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7XUF \| pdb_00007xuf	Download File View File

Cryo-EM structure of the AKT1-AtKC1 complex from Arabidopsis thaliana

Yang, G.H., Lu, Y.M., Jia, Y.T., Yang, F., Zhang, Y.M., Xu, X., Li, X.M., Lei, J.L.

(2022) Nat Commun 13: 5682-5682

Released	2022-11-09
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Potassium channel AKT1 (protein) Potassium channel KAT3 (protein)
Unique Ligands	K

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8JD9 \| pdb_00008jd9	Download File View File

Cyro-EM structure of the Na+/H+ antipoter SOS1 from Arabidopsis thaliana,class1

Yang, G.H., Zhang, Y.M., Zhou, J.Q., Jia, Y.T., Xu, X., Fu, P., Wu, H.Y.

(2023) Nat Plants 9: 1915-1923

Released	2023-11-08
Method	ELECTRON MICROSCOPY 2.87 Å
Organisms	Arabidopsis thaliana
Macromolecule	Sodium/hydrogen exchanger 7 (protein)
Unique Ligands	PC1

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8JDA \| pdb_00008jda	Download File View File

Cyro-EM structure of the Na+/H+ antipoter SOS1 from Arabidopsis thaliana,class2

Yang, G.H., Zhang, Y.M., Zhou, J.Q., Jia, Y.T., Xu, X., Fu, P., Wu, H.Y.

(2023) Nat Plants 9: 1915-1923

Released	2023-11-08
Method	ELECTRON MICROSCOPY 3.67 Å
Organisms	Arabidopsis thaliana
Macromolecule	Sodium/hydrogen exchanger 7 (protein)

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8JGB \| pdb_00008jgb	Download File View File

CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist CNF-Tx2

Sun, J.P., Xu, H.E., Yang, F., Liu, Z.M., Guo, L.L., Zhang, Y.M., Fang, G.X., Tie, L., Zhuang, Y.M., Xue, C.Y.

(2023) Nat Commun 14: 5004-5004

Released	2024-01-10
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Conus textile Homo sapiens
Macromolecule	Unique protein chains: 6

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8JGF \| pdb_00008jgf	Download File View File

CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22

Sun, J.P., Xu, H.E., Yang, F., Liu, Z.M., Guo, L.L., Zhang, Y.M., Fang, G.X., Tie, L., Zhuang, Y.M., Xue, C.Y.

(2023) Nat Commun 14: 5004-5004

Released	2024-01-10
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6

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8JGG \| pdb_00008jgg	Download File View File

CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist BAM8-22

Sun, J.P., Xu, H.E., Ynag, F., Liu, Z.M., Guo, L.L., Zhang, Y.M., Fang, G.X., Tie, L., Zhuang, Y.M., Xue, C.Y.

(2023) Nat Commun 14: 5004-5004

Released	2024-01-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6

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8TWP \| pdb_00008twp	Download File View File

Influenza A virus (A/Aichi/2/1968(H3N2) nucleoprotein mutant - 2-7 deleted, R416A

Yoon, J., Zhang, Y.M., Grant, R.A., Shoulders, M.D.

(2024) Sci Adv 10: eadl6144-eadl6144

Released	2024-07-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Influenza A virus (A/Aichi/2/1968(H3N2))
Macromolecule	Nucleoprotein (protein)

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8TWR \| pdb_00008twr	Download File View File

Influenza A virus (A/Aichi/2/1968(H3N2) nucleoprotein mutant - 2-7 deleted, P283S, R416A

Yoon, J., Zhang, Y.M., Grant, R.A., Shoulders, M.D.

(2024) Sci Adv 10: eadl6144-eadl6144

Released	2024-07-03
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Influenza A virus (A/Aichi/2/1968(H3N2))
Macromolecule	Nucleoprotein (protein)
Unique Ligands	NA

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1G5X | pdb_00001g5x

1NYK | pdb_00001nyk

1P3R | pdb_00001p3r

2ALM | pdb_00002alm

2AQ7 | pdb_00002aq7

2AQB | pdb_00002aqb

2GQD | pdb_00002gqd

7CQ5 | pdb_00007cq5

7CQ6 | pdb_00007cq6

7CQ7 | pdb_00007cq7

7FCV | pdb_00007fcv

7VR1 | pdb_00007vr1

7WSW | pdb_00007wsw

7XUF | pdb_00007xuf

8JD9 | pdb_00008jd9

8JDA | pdb_00008jda

8JGB | pdb_00008jgb

8JGF | pdb_00008jgf

8JGG | pdb_00008jgg

8TWP | pdb_00008twp

8TWR | pdb_00008twr