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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "del Solar, G."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

Streptococcus agalactiae (8)

Taxonomy

Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (8)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (2)
	2005 - 2009 (2)
	2015 - 2019 (1)
	2020 - 2024 (3)

Symmetry Type

	Cyclic (5)
	Asymmetric (3)

SCOP Classification

All alpha proteins (2)

AllSelected

1 to 8 of 8 Structures

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1B01 \| pdb_00001b01	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(CPCPCPGPTPGPCPAPCPTPCPAPAPTPGPCPAPAPT)-3') (nucleic acid) DNA (5'-D(GPAPTPTPGPCPAPTPTPGPAPGPTPGPCPAPCPGPG)-3') (nucleic acid)

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2CPG \| pdb_00002cpg	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein)
Unique Ligands	CL

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3DKX \| pdb_00003dkx	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	CL, MG, MN

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3DKY \| pdb_00003dky	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	MN

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4U87 \| pdb_00004u87	Download File View File

Crystal structure of the Ba-soaked C2 crystal form of pMV158 replication initiator RepB (P3221 space group)

Boer, D.R., Ruiz Maso, J.A., del Solar, G., Coll, M.

(2016) Sci Rep 6: 20915-20915

Released	2015-08-26
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein RepB (protein)
Unique Ligands	BA, CL, MN

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8AMT \| pdb_00008amt	Download File View File

OBD-RepB pMV158 domain

Machon, C., Amodio, J., Boer, R.D., Ruiz-Maso, J.A., del Solar, G., Coll, M.

(2023) Nucleic Acids Res 51: 1458-1472

Released	2023-02-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein RepB (protein)
Unique Ligands	CL, GOL, MN

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8AMU \| pdb_00008amu	Download File View File

RepB pMV158 OBD domain bound to DDR region

Amodio, J., Machon, C., Boer, R.D., Ruiz-Maso, J.A., del Solar, G., Coll, M.

(2023) Nucleic Acids Res 51: 1458-1472

Released	2023-02-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein RepB (protein) DNA (5'-D(APAPAPAPGPTPCPGPCPCPGPAPAPAPAPGPTPCPGPCPCPGPA)-3') (nucleic acid) DNA (5'-D(TPCPGPGPCPGPAPCPTPTPTPTPCPGPGPCPGPAPCPTPTPTPT)-3') (nucleic acid)
Unique Ligands	MN

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8AMV \| pdb_00008amv	Download File View File

RepB pMV158 hexamer

Machon, C., Amodio, J., Boer, R.D., Ruiz-Maso, J.A., del Solar, G., Coll, M.

(2023) Nucleic Acids Res 51: 1458-1472

Released	2023-02-08
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein RepB (protein)
Unique Ligands	NA, PO4

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1B01 | pdb_00001b01

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

2CPG | pdb_00002cpg

TRANSCRIPTIONAL REPRESSOR COPG

3DKX | pdb_00003dkx

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

3DKY | pdb_00003dky

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

4U87 | pdb_00004u87

Crystal structure of the Ba-soaked C2 crystal form of pMV158 replication initiator RepB (P3221 space group)

8AMT | pdb_00008amt

OBD-RepB pMV158 domain

8AMU | pdb_00008amu

RepB pMV158 OBD domain bound to DDR region

8AMV | pdb_00008amv

RepB pMV158 hexamer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1B01 | pdb_00001b01

2CPG | pdb_00002cpg

3DKX | pdb_00003dkx

3DKY | pdb_00003dky

4U87 | pdb_00004u87

8AMT | pdb_00008amt

8AMU | pdb_00008amu

8AMV | pdb_00008amv