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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Abagyan, R.A."

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Search Summary

This query matches 289 Structures.

Refinements

Structure Determination Methodology

experimental (289)

Scientific Name of Source Organism

	Burkholderia thailandensis E264 (34)
	Mycolicibacterium smegmatis MC2 155 (32)
	Mycobacteroides abscessus ATCC 19977 (25)
	Mycobacterium marinum M (24)
	Burkholderia pseudomallei 1710b (23)
	Mycobacterium avium 104 (22)
	Burkholderia pseudomallei (15)
	synthetic construct (12)
	Mycobacterium avium subsp. paratuberculosis (11)
	Mycobacterium tuberculosis (11)

More...

Taxonomy

	Bacteria (245)
	Eukaryota (32)
	other sequences (12)

Experimental Method

	X-RAY DIFFRACTION (278)
	SOLUTION NMR (11)

Polymer Entity Type

Protein (289)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (10)
	1.5 - 2.0 (117)
	2.0 - 2.5 (127)
	2.5 - 3.0 (23)

Release Date

	2005 - 2009 (44)
	2010 - 2014 (213)
	2015 - 2019 (20)
	2020 - 2024 (12)

Enzyme Classification Name

	Transferases (74)
	Lyases (44)
	Oxidoreductases (40)
	Hydrolases (25)
	Ligases (23)
	Isomerases (9)
	Translocases (1)

Symmetry Type

	Cyclic (158)
	Asymmetric (72)
	Dihedral (96)
	Tetrahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (122)
	Alpha and beta proteins (a+b) (42)
	Artifacts (52)
	All beta proteins (22)
	All alpha proteins (14)
	Multi-domain proteins (alpha and beta) (7)

AllSelected

1 to 25 of 289 Structures

Page 1 of 12

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3D3E \| pdb_00003d3e	Download File View File

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Benzamide Inhibitor

Wang, Z., Sudom, A., Liu, J., Walker, N.P.

(2008) J Med Chem 51: 3953-3960

Released	2008-07-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	D3E, NAP

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3D4N \| pdb_00003d4n	Download File View File

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Sulfonamide Inhibitor

Wang, Z., Liu, J., Sudom, A., Walker, N.P.

(2008) J Med Chem 51: 3953-3960

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	D4N, NAP

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3D63 \| pdb_00003d63	Download File View File

Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3DAH \| pdb_00003dah	Download File View File

2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Ribose-phosphate pyrophosphokinase (protein)
Unique Ligands	AMP, PO4

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3DMS \| pdb_00003dms	Download File View File

1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Biochemistry 50: 8103-8106

Released	2008-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Isocitrate dehydrogenase [NADP] (protein)

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3EIY \| pdb_00003eiy	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound pyrophosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PG4, POP

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3EIZ \| pdb_00003eiz	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3EJ0 \| pdb_00003ej0	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound N-(pyridin-3-ylmethyl) aniline, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	11X

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3EJ2 \| pdb_00003ej2	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound 5-amino-1-(4-chlorophenyl)-1h-pyrazole-4-carbonitrile, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	928

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3EK2 \| pdb_00003ek2	Download File View File

Crystal structure of eonyl-(acyl carrier protein) reductase from burkholderia pseudomallei 1719b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Enoyl-(Acyl-carrier-protein) reductase (NADH) (protein)
Unique Ligands	CL

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3EZO \| pdb_00003ezo	Download File View File

Crystal structure of acyl-carrier-protein s-malonyltransferase from burkholderia pseudomallei 1710b

SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)

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3F0D \| pdb_00003f0d	Download File View File

High resolution crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphatase synthase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	ZN

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3F0E \| pdb_00003f0e	Download File View File

Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MG, ZN

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3F0F \| pdb_00003f0f	Download File View File

Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei with hydrolyzed CDP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, GOL, MG, ZN

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3F0G \| pdb_00003f0g	Download File View File

Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase with CMP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, ZN

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3FTP \| pdb_00003ftp	Download File View File

Crystal structure of 3-Ketoacyl-(acyl-carrier-protein) reductase from Burkholderia pseudomallei at 2.05 A resolution

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei
Macromolecule	3-oxoacyl-[acyl-carrier protein] reductase (protein)

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3GK0 \| pdb_00003gk0	Download File View File

Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-03-17
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Pyridoxine 5'-phosphate synthase (protein)
Unique Ligands	DXP, PO4

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3GK3 \| pdb_00003gk3	Download File View File

Crystal structure of acetoacetyl-CoA reductase from Burkholderia pseudomallei 1710b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-03-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Acetoacetyl-CoA reductase (protein)
Unique Ligands	PO4

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3GMT \| pdb_00003gmt	Download File View File

Crystal structure of adenylate kinase from burkholderia pseudomallei

Abendroth, J., Staker, B.L., Robinson, H., Buchko, G.W., Hewitt, S.N., Napuli, A.J., Van Voorhis, W., Stacy, R., Myler, P.J., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) Biochem Biophys Res Commun 394: 1012-1017

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Adenylate kinase (protein)
Unique Ligands	SO4

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3GVC \| pdb_00003gvc	Download File View File

Crystal structure of probable short-chain dehydrogenase-reductase from Mycobacterium tuberculosis

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable short-chain type dehydrogenase/reductase (protein)

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3GVF \| pdb_00003gvf	Download File View File

1.7 Angstrom crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei bound with phosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PGE, PO4

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3GVG \| pdb_00003gvg	Download File View File

Crystal structure of Triosephosphate isomerase from Mycobacterium tuberculosis

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	GOL

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3GWA \| pdb_00003gwa	Download File View File

1.6 Angstrom crystal structure of 3-oxoacyl-(acyl-carrier-protein) synthase III

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	3-oxoacyl-(Acyl-carrier-protein) synthase III (protein)

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3GWC \| pdb_00003gwc	Download File View File

Crystal structure of Mycobacterium tuberculosis thymidylate synthase X bound to FdUMP and FAD

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Thymidylate synthase thyX (protein)
Unique Ligands	FAD, GOL, UFP

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3GWE \| pdb_00003gwe	Download File View File

2.1 Angstrom crystal structure of 3-oxoacyl-(acyl-carrier-protein) synthase III

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	3-oxoacyl-(Acyl-carrier-protein) synthase III (protein)

1 to 25 of 289 Structures

Page 1 of 12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3D3E | pdb_00003d3e

3D4N | pdb_00003d4n

3D63 | pdb_00003d63

3DAH | pdb_00003dah

3DMS | pdb_00003dms

3EIY | pdb_00003eiy

3EIZ | pdb_00003eiz

3EJ0 | pdb_00003ej0

3EJ2 | pdb_00003ej2

3EK2 | pdb_00003ek2

3EZO | pdb_00003ezo

3F0D | pdb_00003f0d

3F0E | pdb_00003f0e

3F0F | pdb_00003f0f

3F0G | pdb_00003f0g

3FTP | pdb_00003ftp

3GK0 | pdb_00003gk0

3GK3 | pdb_00003gk3

3GMT | pdb_00003gmt

3GVC | pdb_00003gvc

3GVF | pdb_00003gvf

3GVG | pdb_00003gvg

3GWA | pdb_00003gwa

3GWC | pdb_00003gwc

3GWE | pdb_00003gwe