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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Alexa, A."

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Search Summary

This query matches 260 Structures.

Refinements

Structure Determination Methodology

experimental (260)

Scientific Name of Source Organism

	Homo sapiens (47)
	JC polyomavirus (20)
	Betapolyomavirus hominis (9)
	Human adenovirus D37 (9)
	Staphylococcus aureus subsp. aureus N315 (9)
	Coxsackievirus A24 (8)
	Mammalian orthoreovirus 1 Lang (8)
	Mus musculus (8)
	Sheep polyomavirus 1 (7)
	Alphapolyomavirus muris (6)

More...

Taxonomy

	Monodnaviria (88)
	Eukaryota (74)
	Bacteria (58)
	Riboviria (34)
	Varidnaviria (23)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (255)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (260)

Refinement Resolution (Å)

	1.0 - 1.5 (22)
	1.5 - 2.0 (102)
	2.0 - 2.5 (77)
	2.5 - 3.0 (29)
	3.0 - 3.5 (19)
	3.5 - 4.0 (8)
	> 4.5 (2)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (14)
	2000 - 2004 (10)
	2005 - 2009 (18)
	2010 - 2014 (83)
	2015 - 2019 (61)
	2020 - 2024 (67)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (38)
	Hydrolases (13)
	Oxidoreductases (6)
	Ligases (2)

Symmetry Type

	Cyclic (166)
	Asymmetric (87)
	Dihedral (11)
	Icosahedral (14)

SCOP Classification

	All beta proteins (98)
	Artifacts (22)
	Alpha and beta proteins (a+b) (22)
	Small proteins (14)
	Alpha and beta proteins (a/b) (18)
	Low resolution protein structures (2)
	All alpha proteins (3)

AllSelected

1 to 25 of 260 Structures

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1CKL \| pdb_00001ckl	Download File View File

N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP)

Casasnovas, J., Larvie, M., Stehle, T.

(1999) EMBO J 18: 2911-2922

Released	1999-06-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CD46) (protein)
Unique Ligands	CA, CL
Unique branched monosaccharides	BMA, MAN, NAG

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1CN3 \| pdb_00001cn3	Download File View File

INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY

Chen, X., Stehle, T., Harrison, S.C.

(1998) EMBO J 17: 3233-3240

Released	1999-06-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Murine polyomavirus (strain Crawford small-plaque) Polyomavirus sp.
Macromolecule	COAT PROTEIN VP1 (protein) FRAGMENT OF COAT PROTEIN VP2 (protein)

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1D3E \| pdb_00001d3e	Download File View File

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

Bella, J., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

Released	2000-01-19
Method	ELECTRON MICROSCOPY 28 Å
Organisms	Homo sapiens Human rhinovirus sp.
Macromolecule	PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) (protein)

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1D3I \| pdb_00001d3i	Download File View File

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

Bella, J., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

Released	2000-01-19
Method	ELECTRON MICROSCOPY 26 Å
Organisms	Homo sapiens Human rhinovirus sp.
Macromolecule	PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) (protein)

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1D3L \| pdb_00001d3l	Download File View File

D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.

Bella, J., Kolatkar, P.R., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

Released	1999-12-01
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) (protein)

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1GKY \| pdb_00001gky	Download File View File

REFINED STRUCTURE OF THE COMPLEX BETWEEN GUANYLATE KINASE AND ITS SUBSTRATE GMP AT 2.0 ANGSTROMS RESOLUTION

Stehle, T., Schulz, G.E.

(1992) J Mol Biology 224: 1127-1141

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GUANYLATE KINASE (protein)
Unique Ligands	5GP, SO4

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1IC1 \| pdb_00001ic1	Download File View File

THE CRYSTAL STRUCTURE FOR THE N-TERMINAL TWO DOMAINS OF ICAM-1

Casasnovas, J.M., Stehle, T., Liu, J.-H., Wang, J.-H., Springer, T.A.

(1998) Proc Natl Acad Sci U S A 95: 4134-4139

Released	1998-06-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	INTERCELLULAR ADHESION MOLECULE-1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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1JV2 \| pdb_00001jv2	Download File View File

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN ALPHAVBETA3

Xiong, J.P., Stehle, T., Diefenbach, B., Zhang, R., Dunker, R., Scott, D., Joachimiak, A., Goodman, S.L., Arnaout, M.A.

(2001) Science 294: 339-345

Released	2001-10-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	INTEGRIN, ALPHA V (protein) PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG, NDG

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1KKE \| pdb_00001kke	Download File View File

Crystal Structure of Reovirus Attachment Protein Sigma1 Trimer

Chappell, J.D., Prota, A.E., Dermody, T.S., Stehle, T.

(2002) EMBO J 21: 1-11

Released	2001-12-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mammalian orthoreovirus 3 Dearing
Macromolecule	SIGMA 1 PROTEIN (protein)

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1L5G \| pdb_00001l5g	Download File View File

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN AVB3 IN COMPLEX WITH AN ARG-GLY-ASP LIGAND

Xiong, J.-P., Stehle, T., Zhang, R., Joachimiak, A., Frech, M., Goodman, S.L., Arnaout, M.A.

(2002) Science 296: 151-155

Released	2002-04-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	CYCLIC ARG-GLY-ASP PEPTIDE (protein) INTEGRIN ALPHA V (protein) INTEGRIN BETA-3 (protein)
Unique Ligands	MN, NAG
Unique branched monosaccharides	NAG, NDG

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1LY2 \| pdb_00001ly2	Download File View File

Crystal structure of unliganded human CD21 SCR1-SCR2 (Complement receptor type 2)

Prota, A.E., Sage, D.R., Stehle, T., Fingeroth, J.D.

(2002) Proc Natl Acad Sci U S A 99: 10641-10646

Released	2002-07-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	complement receptor type 2 (protein)
Unique Ligands	NAG

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1M1U \| pdb_00001m1u	Download File View File

AN ISOLEUCINE-BASED ALLOSTERIC SWITCH CONTROLS AFFINITY AND SHAPE SHIFTING IN INTEGRIN CD11B A-DOMAIN

Xiong, J.-P., Li, R., Essafi, M., Stehle, T., Arnaout, M.A.

(2000) J Biological Chem 275: 38762-38767

Released	2002-08-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-M (protein)
Unique Ligands	CA

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1M1X \| pdb_00001m1x	Download File View File

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN ALPHA VBETA3 BOUND TO MN2+

Xiong, J.-P., Stehle, T., Zhang, R., Joachimiak, A., Frech, M., Goodman, S.L., Arnaout, M.A.

(2002) Science 296: 151-155

Released	2002-08-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-V (protein) Integrin beta-3 (protein)
Unique Ligands	MN, NAG
Unique branched monosaccharides	NAG, NDG

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1NBQ \| pdb_00001nbq	Download File View File

Crystal Structure of Human Junctional Adhesion Molecule Type 1

Prota, A.E., Campbell, J.A., Schelling, P., Forrest, J.C., Watson, M.J., Peters, T.R., Aurrand-Lions, M., Imhof, B.A., Dermody, T.S., Stehle, T.

(2003) Proc Natl Acad Sci U S A 100: 5366-5371

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Junctional adhesion molecule 1 (protein)

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1NHP \| pdb_00001nhp	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 6985-6992

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

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1NHQ \| pdb_00001nhq	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 6985-6992

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

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1NHR \| pdb_00001nhr	Download File View File

AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 5180-5190

Released	1995-02-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

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1NHS \| pdb_00001nhs	Download File View File

AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 5180-5190

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

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1NPX \| pdb_00001npx	Download File View File

STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION

Stehle, T., Ahmed, S.A., Claiborne, A., Schulz, G.E.

(1991) J Mol Biology 221: 1325-1344

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD

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1SID \| pdb_00001sid	Download File View File

MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE

Stehle, T., Harrison, S.C.

(1996) Structure 4: 183-194

Released	1996-06-20
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Mouse polyomavirus (strain p16 small-plaque)
Macromolecule	POLYOMAVIRUS COAT PROTEIN VP1 (protein)
Unique branched monosaccharides	BGC, GAL, SIA

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1SIE \| pdb_00001sie	Download File View File

MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE

Stehle, T., Harrison, S.C.

(1996) Structure 4: 183-194

Released	1996-06-20
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Mouse polyomavirus (strain p16 small-plaque)
Macromolecule	POLYOMAVIRUS COAT PROTEIN VP1 (protein)
Unique branched monosaccharides	GAL, NAG, SIA

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1SVA \| pdb_00001sva	Download File View File

SIMIAN VIRUS 40

Stehle, T., Gamblin, S.J., Harrison, S.C.

(1996) Structure 4: 165-182

Released	1996-06-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Betapolyomavirus macacae
Macromolecule	SIMIAN VIRUS 40 (protein)

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1U8C \| pdb_00001u8c	Download File View File

A novel adaptation of the integrin PSI domain revealed from its crystal structure

Xiong, J.P., Stehle, T., Goodman, S.L., Arnaout, M.A.

(2004) J Biological Chem 279: 40252-40254

Released	2004-12-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-V (protein) Integrin beta-3 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG, NDG

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1VPN \| pdb_00001vpn	Download File View File

UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER

Stehle, T., Harrison, S.C.

(1997) EMBO J 16: 5139-5148

Released	1997-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Alphapolyomavirus muris
Macromolecule	POLYOMAVIRUS VP1 PENTAMER (protein)

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1VPS \| pdb_00001vps	Download File View File

POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE

Stehle, T., Harrison, S.C.

(1997) EMBO J 16: 5139-5148

Released	1997-05-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Alphapolyomavirus muris
Macromolecule	POLYOMAVIRUS VP1 PENTAMER (protein)
Unique branched monosaccharides	GAL, NAG, SIA

1 to 25 of 260 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CKL | pdb_00001ckl

1CN3 | pdb_00001cn3

1D3E | pdb_00001d3e

1D3I | pdb_00001d3i

1D3L | pdb_00001d3l

1GKY | pdb_00001gky

1IC1 | pdb_00001ic1

1JV2 | pdb_00001jv2

1KKE | pdb_00001kke

1L5G | pdb_00001l5g

1LY2 | pdb_00001ly2

1M1U | pdb_00001m1u

1M1X | pdb_00001m1x

1NBQ | pdb_00001nbq

1NHP | pdb_00001nhp

1NHQ | pdb_00001nhq

1NHR | pdb_00001nhr

1NHS | pdb_00001nhs

1NPX | pdb_00001npx

1SID | pdb_00001sid

1SIE | pdb_00001sie

1SVA | pdb_00001sva

1U8C | pdb_00001u8c

1VPN | pdb_00001vpn

1VPS | pdb_00001vps