RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Annis, D.A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Vicugna pacos (8)
	Aequorea victoria (2)
	Camelus dromedarius (2)
	Human immunodeficiency virus 1 (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Homo sapiens (1)
	Human immunodeficiency virus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	Riboviria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (2)

SCOP Classification

	All beta proteins (7)
	Artifacts (6)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

2XT1 \| pdb_00002xt1	Download File View File

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 231) in complex with a camelid VHH.

Igonet, S., Vaney, M.C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Human immunodeficiency virus 1 Vicugna pacos
Macromolecule	CAMELID VHH 9 (protein) GAG POLYPROTEIN (protein)
Unique Ligands	GOL

Explore in 3D

2XV6 \| pdb_00002xv6	Download File View File

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 220) in complex with a camelid VHH.

Igonet, S., Vaney, M.C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Human immunodeficiency virus 1 Vicugna pacos
Macromolecule	CAMELID VHH 9 (protein) CAPSID PROTEIN P24 (protein)

Explore in 3D

2XXC \| pdb_00002xxc	Download File View File

Crystal structure of a camelid VHH raised against the HIV-1 capsid protein C-terminal domain.

Igonet, S., Vaney, M.C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Vicugna pacos
Macromolecule	CAMELID VHH 9 (protein)

Explore in 3D

2XXM \| pdb_00002xxm	Download File View File

Crystal structure of the HIV-1 capsid protein C-terminal domain in complex with a camelid VHH and the CAI peptide.

Igonet, S., Vaney, M.C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Human immunodeficiency virus Vicugna pacos synthetic construct
Macromolecule	CAMELID VHH 9 (protein) CAPSID PROTEIN P24 (protein) INHIBITOR OF CAPSID ASSEMBLY (protein)
Unique Ligands	ACT

Explore in 3D

3G9A \| pdb_00003g9a	Download File View File

Green fluorescent protein bound to minimizer nanobody

Kirchhofer, A., Helma, J., Schmidthals, K., Frauer, C., Cui, S., Karcher, A., Pellis, M., Muyldermans, S., Delucci, C.C., Cardoso, M.C., Leonhardt, H., Hopfner, K.-P., Rothbauer, U.

(2010) Nat Struct Mol Biol 17: 133-138

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.614 Å
Organisms	Aequorea victoria Camelus dromedarius
Macromolecule	Green fluorescent protein (protein) Minimizer (protein)

Explore in 3D

3K1K \| pdb_00003k1k	Download File View File

Green fluorescent protein bound to enhancer nanobody

Kirchhofer, A., Helma, J., Schmidthals, K., Frauer, C., Cui, S., Karcher, A., Pellis, M., Muyldermans, S., Delucci, C.C., Cardoso, M.C., Leonhardt, H., Hopfner, K.-P., Rothbauer, U.

(2010) Nat Struct Mol Biol 17: 133-138

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aequorea victoria Camelus dromedarius
Macromolecule	Enhancer (protein) Green Fluorescent Protein (protein)

Explore in 3D

5IVN \| pdb_00005ivn	Download File View File

BC2 nanobody in complex with the BC2 peptide tag

Braun, M.B., Stehle, T.

(2016) Sci Rep 6: 19211

Released	2016-04-06
Method	X-RAY DIFFRACTION 1 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	BC2-nanobody (protein) Cadherin derived peptide (protein)

Explore in 3D

5IVO \| pdb_00005ivo	Download File View File

BC2 nanobody

Braun, M.B., Stehle, T.

(2016) Sci Rep 6: 19211

Released	2016-04-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vicugna pacos
Macromolecule	BC2-nanobody (protein)
Unique Ligands	MPD

Explore in 3D

7B27 \| pdb_00007b27	Download File View File

RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230

Ostertag, E., Zocher, G., Stehle, T.

(2021) EMBO Rep 22: e52325-e52325

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.902 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Surface glycoprotein (protein) neutralizing nanobody NM1230 (protein)
Unique Ligands	NAG

Explore in 3D

7NKT \| pdb_00007nkt	Download File View File

RBD domain of SARS-CoV2 in complex with neutralizing nanobody NM1226

Ostertag, E., Zocher, G., Stehle, T.

(2021) EMBO Rep 22: e52325-e52325

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Spike protein S1 (protein) neutralizing nanobody NM1226 (protein)
Unique Ligands	NAG, PEG, PO4

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2XT1 | pdb_00002xt1

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 231) in complex with a camelid VHH.

2XV6 | pdb_00002xv6

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 220) in complex with a camelid VHH.

2XXC | pdb_00002xxc

Crystal structure of a camelid VHH raised against the HIV-1 capsid protein C-terminal domain.

2XXM | pdb_00002xxm

Crystal structure of the HIV-1 capsid protein C-terminal domain in complex with a camelid VHH and the CAI peptide.

3G9A | pdb_00003g9a

Green fluorescent protein bound to minimizer nanobody

3K1K | pdb_00003k1k

Green fluorescent protein bound to enhancer nanobody

5IVN | pdb_00005ivn

BC2 nanobody in complex with the BC2 peptide tag

5IVO | pdb_00005ivo

BC2 nanobody

7B27 | pdb_00007b27

RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230

7NKT | pdb_00007nkt

RBD domain of SARS-CoV2 in complex with neutralizing nanobody NM1226

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2XT1 | pdb_00002xt1

2XV6 | pdb_00002xv6

2XXC | pdb_00002xxc

2XXM | pdb_00002xxm

3G9A | pdb_00003g9a

3K1K | pdb_00003k1k

5IVN | pdb_00005ivn

5IVO | pdb_00005ivo

7B27 | pdb_00007b27

7NKT | pdb_00007nkt