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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Baker, D.P."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (9)
	Escherichia coli (3)
	Rhodotorula graminis (2)

Taxonomy

	Eukaryota (11)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (3)

Enzyme Classification Name

Transferases (9)

Symmetry Type

	Asymmetric (6)
	Cyclic (5)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (3)
	Small proteins (3)
	Artifacts (1)

AllSelected

1 to 14 of 14 Structures

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1TTH \| pdb_00001tth	Download File View File

Aspartate Transcarbamoylase Catalytic Chain Mutant Glu50Ala Complexed with N-(Phosphonacetyl-L-Aspartate) (PALA)

Stieglitz, K., Stec, B., Baker, D.P., Kantrowitz, E.R.

(2004) J Mol Biology 341: 853-868

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	PAL, ZN

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1TU0 \| pdb_00001tu0	Download File View File

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide

Stieglitz, K., Stec, B., Baker, D.P., Kantrowitz, E.R.

(2004) J Mol Biology 341: 853-868

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	PCT, ZN

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1TUG \| pdb_00001tug	Download File View File

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide, Malonate, and Cytidine-5-Prime-Triphosphate (CTP)

Stieglitz, K., Stec, B., Baker, D.P., Kantrowitz, E.R.

(2004) J Mol Biology 341: 853-868

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, MLI, PCT, ZN

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2O8Y \| pdb_00002o8y	Download File View File

Apo IRAK4 Kinase Domain

Boriack-Sjodin, P.A., Mol, C.

To be published

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 receptor-associated kinase 4 (protein)

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2W2K \| pdb_00002w2k	Download File View File

Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at 1.8A.

Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.

To be published

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rhodotorula graminis
Macromolecule	D-MANDELATE DEHYDROGENASE (protein)

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2W2L \| pdb_00002w2l	Download File View File

Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.

Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.

To be published

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodotorula graminis
Macromolecule	D-MANDELATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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3GEN \| pdb_00003gen	Download File View File

The 1.6 A crystal structure of human bruton's tyrosine kinase bound to a pyrrolopyrimidine-containing compound

Marcotte, D.J., Liu, Y.T., Arduini, R.M., Hession, C.A., Miatkowski, K., Wildes, C.P., Cullen, P.F., Hopkins, B., Mertsching, E., Jenkins, T.J., Romanowski, M.J., Baker, D.P., Silvian, L.F.

(2010) Protein Sci 19: 429-439

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	B43

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3K54 \| pdb_00003k54	Download File View File

Structures of human Bruton's tyrosine kinase in active and inactive conformations suggests a mechanism of activation for TEC family kinases.

Marcotte, D.J., Liu, Y.-T., Arduini, R.M., Hession, C.A., Miatkowski, K., Wildes, C.P., Cullen, P.F., Hopkins, B.T., Mertsching, E., Jenkins, T.J., Romanowski, M.J., Baker, D.P., Silvian, L.F.

(2010) Protein Sci 19: 429-439

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	1N1

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6AR4 \| pdb_00006ar4	Download File View File

Crystal structure of PICK1 in complex with the small molecule inhibitor 1o

Marcotte, D.

(2018) Sci Rep 8: 13438-13438

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)
Unique Ligands	BQA

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6BJN \| pdb_00006bjn	Download File View File

PICK1 PDZ domain in complex with the class I PDZ binding motif QSAV

Marcotte, D.J.

(2018) Protein Sci 27: 672-680

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)

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6BJO \| pdb_00006bjo	Download File View File

PICK1 PDZ domain in complex with the small molecule inhibitor BIO124.

Marcotte, D.J.

(2018) Protein Sci 27: 672-680

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)
Unique Ligands	DUY

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8FLG \| pdb_00008flg	Download File View File

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, Y8C

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8FLH \| pdb_00008flh	Download File View File

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-03-01
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, Y8H

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8FLV \| pdb_00008flv	Download File View File

Bruton's tyrosine kinase in complex with compound 34

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, PEG, ZB9

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1TTH | pdb_00001tth

Aspartate Transcarbamoylase Catalytic Chain Mutant Glu50Ala Complexed with N-(Phosphonacetyl-L-Aspartate) (PALA)

1TU0 | pdb_00001tu0

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide

1TUG | pdb_00001tug

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide, Malonate, and Cytidine-5-Prime-Triphosphate (CTP)

2O8Y | pdb_00002o8y

Apo IRAK4 Kinase Domain

2W2K | pdb_00002w2k

Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at 1.8A.

2W2L | pdb_00002w2l

Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.

3GEN | pdb_00003gen

The 1.6 A crystal structure of human bruton's tyrosine kinase bound to a pyrrolopyrimidine-containing compound

3K54 | pdb_00003k54

Structures of human Bruton's tyrosine kinase in active and inactive conformations suggests a mechanism of activation for TEC family kinases.

6AR4 | pdb_00006ar4

Crystal structure of PICK1 in complex with the small molecule inhibitor 1o

6BJN | pdb_00006bjn

PICK1 PDZ domain in complex with the class I PDZ binding motif QSAV

6BJO | pdb_00006bjo

PICK1 PDZ domain in complex with the small molecule inhibitor BIO124.

8FLG | pdb_00008flg

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

8FLH | pdb_00008flh

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

8FLV | pdb_00008flv

Bruton's tyrosine kinase in complex with compound 34

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1TTH | pdb_00001tth

1TU0 | pdb_00001tu0

1TUG | pdb_00001tug

2O8Y | pdb_00002o8y

2W2K | pdb_00002w2k

2W2L | pdb_00002w2l

3GEN | pdb_00003gen

3K54 | pdb_00003k54

6AR4 | pdb_00006ar4

6BJN | pdb_00006bjn

6BJO | pdb_00006bjo

8FLG | pdb_00008flg

8FLH | pdb_00008flh

8FLV | pdb_00008flv