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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Baumeister, W."

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Search Summary

This query matches 92 Structures.

Refinements

Structure Determination Methodology

experimental (92)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (16)
	Homo sapiens (12)
	Archaeoglobus fulgidus DSM 4304 (8)
	Mus musculus (8)
	Saccharomyces cerevisiae (8)
	synthetic construct (7)
	Escherichia coli BL21(DE3) (6)
	Lama glama (6)
	Thermoplasma acidophilum (6)
	Synechocystis sp. PCC 6803 substr. Kazusa (5)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (17)
	Archaea (15)
	Riboviria (8)
	other sequences (7)

Experimental Method

	ELECTRON MICROSCOPY (69)
	X-RAY DIFFRACTION (21)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (92)
	RNA (6)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (6)
	3.0 - 3.5 (14)
	3.5 - 4.0 (9)
	4.0 - 4.5 (14)
	> 4.5 (36)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (10)
	2015 - 2019 (43)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (53)
	Transferases (5)
	Isomerases (9)
	Translocases (6)

Membrane Protein Annotation

	mpstruc (11)
	PDBTM (7)
	MemProtMD (5)
	OPM (4)

Symmetry Type

	Asymmetric (61)
	Cyclic (27)
	Dihedral (5)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (8)
	All alpha proteins (3)
	Artifacts (4)
	All beta proteins (6)
	Coiled coil proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 92 Structures

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1ASS \| pdb_00001ass	Download File View File

APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM

Klumpp, M., Baumeister, W., Essen, L.-O.

(1997) Cell 91: 263-270

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)
Unique Ligands	NA, PO4

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1ASX \| pdb_00001asx	Download File View File

APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM

Klumpp, M., Baumeister, W., Essen, L.-O.

(1997) Cell 91: 263-270

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)
Unique Ligands	PO4

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1CZ4 \| pdb_00001cz4	Download File View File

NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA)

Coles, M., Diercks, T., Liermann, J., Groeger, A., Rockel, B., Baumeister, W., Koretke, K., Lupas, A., Peters, J., Kessler, H.

(1999) Curr Biol 9: 1158-1168

Released	1999-10-12
Method	SOLUTION NMR
Organisms	Thermoplasma acidophilum
Macromolecule	VCP-LIKE ATPASE (protein)

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1CZ5 \| pdb_00001cz5	Download File View File

NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA)

Coles, M., Diercks, T., Liermann, J., Groeger, A., Rockel, B., Baumeister, W., Koretke, K., Lupas, A., Peters, J., Kessler, H.

(1999) Curr Biol 9: 1158-1168

Released	1999-10-12
Method	SOLUTION NMR
Organisms	Thermoplasma acidophilum
Macromolecule	VCP-LIKE ATPASE (protein)

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1E0R \| pdb_00001e0r	Download File View File

Beta-apical domain of thermosome

Bosch, G., Baumeister, W., Essen, L.-O.

(2000) J Mol Biology 301: 19

Released	2000-08-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)

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1PMA \| pdb_00001pma	Download File View File

PROTEASOME FROM THERMOPLASMA ACIDOPHILUM

Loewe, J., Stock, D., Jap, B., Zwickl, P., Baumeister, W., Huber, R.

(1995) Science 268: 533-539

Released	1996-06-20
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermoplasma acidophilum
Macromolecule	PROTEASOME (protein)

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1Q5Q \| pdb_00001q5q	Download File View File

The Rhodococcus 20S proteasome

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodococcus erythropolis
Macromolecule	proteasome alpha-type subunit 1 (protein) proteasome beta-type subunit 1 (protein)

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1Q5R \| pdb_00001q5r	Download File View File

The Rhodococcus 20S proteasome with unprocessed pro-peptides

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rhodococcus erythropolis
Macromolecule	proteasome alpha-type subunit 1 (protein) proteasome beta-type subunit 1 (protein)

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2GOP \| pdb_00002gop	Download File View File

The beta-propeller domain of the Trilobed protease from Pyrococcus furiosus reveals an open velcro topology

Bosch, J., Tamura, T., Tamura, N., Baumeister, W., Essen, L.-O.

(2007) Acta Crystallogr D Biol Crystallogr 63: 179-187

Released	2007-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Trilobed Protease (protein)

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2H6J \| pdb_00002h6j	Download File View File

Crystal Structure of the Beta F145A Rhodococcus Proteasome

Kwon, Y.D.

(2006) Structure 14: 1179-1188

Released	2006-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rhodococcus erythropolis
Macromolecule	Proteasome alpha-type subunit 1 (protein) Proteasome beta-type subunit 1 (protein)

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3J47 \| pdb_00003j47	Download File View File

Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid

Estrin, E., Lopez-Blanco, J.R., Chacon, P., Martin, A.

(2013) Structure 21: 1624-1635

Released	2013-08-28
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

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3LXU \| pdb_00003lxu	Download File View File

Crystal Structure of Tripeptidyl Peptidase 2 (TPP II)

Chuang, C.K.

(2010) Nat Struct Mol Biol 17: 990-996

Released	2010-08-11
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Drosophila melanogaster
Macromolecule	Tripeptidyl-peptidase 2 (protein)

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3TXM \| pdb_00003txm	Download File View File

Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex

Pathare, G.R., Bracher, A.

(2012) Proc Natl Acad Sci U S A 109: 149-154

Released	2011-12-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Drosophila melanogaster
Macromolecule	26S proteasome regulatory complex subunit p42B (protein)
Unique Ligands	GD3, SO4

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3TXN \| pdb_00003txn	Download File View File

Crystal structure of Rpn6 from Drosophila melanogaster, native data

Pathare, G.R., Bracher, A.

(2012) Proc Natl Acad Sci U S A 109: 149-154

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.496 Å
Organisms	Drosophila melanogaster
Macromolecule	26S proteasome regulatory complex subunit p42B (protein)
Unique Ligands	GOL, SO4

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4CR2 \| pdb_00004cr2	Download File View File

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome

Unverdorben, P., Beck, F., Sledz, P., Schweitzer, A., Pfeifer, G., Plitzko, J.M., Baumeister, W., Foerster, F.

(2014) Proc Natl Acad Sci U S A 111: 5544

Released	2014-04-02
Method	ELECTRON MICROSCOPY 7.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 33

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4CR3 \| pdb_00004cr3	Download File View File

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome

Unverdorben, P., Beck, F., Sledz, P., Schweitzer, A., Pfeifer, G., Plitzko, J.M., Baumeister, W., Foerster, F.

(2014) Proc Natl Acad Sci U S A 111: 5544

Released	2014-04-02
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 33

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4CR4 \| pdb_00004cr4	Download File View File

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome

Unverdorben, P., Beck, F., Sledz, P., Schweitzer, A., Pfeifer, G., Plitzko, J.M., Baumeister, W., Foerster, F.

(2014) Proc Natl Acad Sci U S A 111: 5544

Released	2014-04-02
Method	ELECTRON MICROSCOPY 8.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 33

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4OCL \| pdb_00004ocl	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)
Unique Ligands	ZN

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4OCM \| pdb_00004ocm	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)
Unique Ligands	K, ZN

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4OCN \| pdb_00004ocn	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)

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4V1M \| pdb_00004v1m	Download File View File

Architecture of the RNA polymerase II-Mediator core transcription initiation complex

Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.

(2015) Nature 518: 376

Released	2015-02-04
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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4V1N \| pdb_00004v1n	Download File View File

Architecture of the RNA polymerase II-Mediator core transcription initiation complex

Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.

(2015) Nature 518: 376

Released	2015-02-04
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Saccharomyces cerevisiae Saccharomyces mikatae synthetic construct
Macromolecule	Unique protein chains: 16 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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4V1O \| pdb_00004v1o	Download File View File

Architecture of the RNA polymerase II-Mediator core transcription initiation complex

Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.

(2015) Nature 518: 376

Released	2015-02-04
Method	ELECTRON MICROSCOPY 9.7 Å
Organisms	Saccharomyces cerevisiae Saccharomyces mikatae synthetic construct
Macromolecule	Unique protein chains: 23 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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5A5B \| pdb_00005a5b	Download File View File

Structure of the 26S proteasome-Ubp6 complex

Aufderheide, A., Beck, F., Stengel, F., Hartwig, M., Schweitzer, A., Pfeifer, G., Goldberg, A.L., Sakata, E., Baumeister, W., Foerster, F.

(2015) Proc Natl Acad Sci U S A 112: 8626

Released	2015-07-22
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 35

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5FLM \| pdb_00005flm	Download File View File

Structure of transcribing mammalian RNA polymerase II

Bernecky, C., Herzog, F., Baumeister, W., Plitzko, J.M., Cramer, P.

(2016) Nature 529: 551

Released	2016-01-20
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

1 to 25 of 92 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ASS | pdb_00001ass

1ASX | pdb_00001asx

1CZ4 | pdb_00001cz4

1CZ5 | pdb_00001cz5

1E0R | pdb_00001e0r

1PMA | pdb_00001pma

1Q5Q | pdb_00001q5q

1Q5R | pdb_00001q5r

2GOP | pdb_00002gop

2H6J | pdb_00002h6j

3J47 | pdb_00003j47

3LXU | pdb_00003lxu

3TXM | pdb_00003txm

3TXN | pdb_00003txn

4CR2 | pdb_00004cr2

4CR3 | pdb_00004cr3

4CR4 | pdb_00004cr4

4OCL | pdb_00004ocl

4OCM | pdb_00004ocm

4OCN | pdb_00004ocn

4V1M | pdb_00004v1m

4V1N | pdb_00004v1n

4V1O | pdb_00004v1o

5A5B | pdb_00005a5b

5FLM | pdb_00005flm