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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Carfi, A."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Homo sapiens (38)
	Stenotrophomonas maltophilia (10)
	Human immunodeficiency virus 1 (7)
	Human alphaherpesvirus 1 (5)
	Aeromonas hydrophila (4)
	Macaca mulatta (4)
	Mus musculus (4)
	synthetic construct (4)
	Bacillus cereus (3)
	Human herpesvirus 3 strain Oka vaccine (3)

More...

Taxonomy

	Eukaryota (43)
	Riboviria (21)
	Bacteria (20)
	Duplodnaviria (14)
	other sequences (4)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (66)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

Protein (78)

Refinement Resolution (Å)

	1.5 - 2.0 (22)
	2.0 - 2.5 (19)
	2.5 - 3.0 (12)
	3.0 - 3.5 (13)
	3.5 - 4.0 (5)
	4.0 - 4.5 (5)
	> 4.5 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (9)
	2005 - 2009 (33)
	2010 - 2014 (10)
	2015 - 2019 (7)
	2020 - 2024 (14)

Enzyme Classification Name

	Hydrolases (34)
	Transferases (5)

Symmetry Type

	Asymmetric (63)
	Cyclic (17)
	Dihedral (4)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a+b) (19)
	Coiled coil proteins (3)
	Multi-domain proteins (alpha and beta) (8)
	Artifacts (7)
	Alpha and beta proteins (a/b) (8)
	Small proteins (6)

AllSelected

1 to 25 of 78 Structures

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1BMC \| pdb_00001bmc	Download File View File

STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS

Carfi, A., Pares, S., Duee, E., Dideberg, O.

(1995) EMBO J 14: 4914-4921

Released	1996-08-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus cereus
Macromolecule	METALLO-BETA-LACTAMASE (protein)
Unique Ligands	ZN

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1BVT \| pdb_00001bvt	Download File View File

METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9

Carfi, A., Duee, E., Dideberg, O.

(1998) Acta Crystallogr D Biol Crystallogr 54: 313-323

Released	1998-09-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus cereus
Macromolecule	PROTEIN (BETA-LACTAMASE) (protein)
Unique Ligands	BCT, ZN

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1CQ3 \| pdb_00001cq3	Download File View File

STRUCTURE OF A SOLUBLE SECRETED CHEMOKINE INHIBITOR, VCCI, FROM COWPOX VIRUS

Carfi, A., Smith, C.A., Smolak, P.J., McGrew, J., Wiley, D.C.

(1999) Proc Natl Acad Sci U S A 96: 12379-12383

Released	1999-11-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cowpox virus
Macromolecule	VIRAL CHEMOKINE INHIBITOR (protein)

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1DXK \| pdb_00001dxk	Download File View File

Metallo-beta-lactamase from Bacillus cereus 569/H/9 C168S mutant

Chantalat, L., Duee, E., Dideberg, O.

(2000) Protein Sci 9: 1402-1406

Released	2000-08-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus cereus
Macromolecule	CLASS B BETA-LACTAMASE (protein)
Unique Ligands	BCT, ZN

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1EBO \| pdb_00001ebo	Download File View File

CRYSTAL STRUCTURE OF THE EBOLA VIRUS MEMBRANE-FUSION SUBUNIT, GP2, FROM THE ENVELOPE GLYCOPROTEIN ECTODOMAIN

Weissenhorn, W., Carfi, A., Lee, K.H., Skehel, J.J., Wiley, D.C.

(1998) Mol Cell 2: 605-616

Released	1999-07-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Ebola virus sp.
Macromolecule	EBOLA VIRUS ENVELOPE PROTEIN CHIMERA CONSISTING OF A FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO A FRAGMENT OF GP2 (protein)
Unique Ligands	CL, ZN

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1FYT \| pdb_00001fyt	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX OF A HUMAN ALPHA/BETA-T CELL RECEPTOR, INFLUENZA HA ANTIGEN PEPTIDE, AND MHC CLASS II MOLECULE, HLA-DR1

Hennecke, J., Carfi, A., Wiley, D.C.

(2000) EMBO J 19: 5611-5624

Released	2000-11-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	H3N2 subtype Homo sapiens
Macromolecule	HEMAGGLUTININ HA1 PEPTIDE CHAIN (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN (protein) T-CELL RECEPTOR ALPHA CHAIN (protein) T-CELL RECEPTOR BETA CHAIN (protein)
Unique Ligands	NAG

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1JMA \| pdb_00001jma	Download File View File

CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS GLYCOPROTEIN D BOUND TO THE CELLULAR RECEPTOR HVEA/HVEM

Carfi, A., Willis, S.H., Whitbeck, J.C., Krummenacker, C., Cohen, G.H., Eisenberg, R.J., Wiley, D.C.

(2001) Mol Cell 8: 169-179

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Human alphaherpesvirus 1
Macromolecule	GLYCOPROTEIN D (protein) HERPESVIRUS ENTRY MEDIATOR (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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1L2G \| pdb_00001l2g	Download File View File

Structure of a C-terminally truncated form of glycoprotein D from HSV-1

Carfi, A., Willis, S.H., Whitbeck, J.C., Krummenacher, C., Cohen, G.H., Eisenberg, R.J., Wiley, D.C.

(2001) Mol Cell 8: 169-179

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	Glycoprotein D (protein)
Unique Ligands	NAG

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1X8G \| pdb_00001x8g	Download File View File

Crystal Structure of the Mono-Zinc Carbapenemase CphA from Aeromonas Hydrophyla

Garau, G., Dideberg, O.

(2005) J Mol Biology 345: 785-795

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aeromonas hydrophila
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CO3, SO4, ZN

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1X8H \| pdb_00001x8h	Download File View File

The Mono-Zinc Carbapenemase CphA (N220G mutant) Shows a Zn(II)- NH2 ARG Coordination

Garau, G., Dideberg, O.

(2005) J Mol Biology 345: 785-795

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aeromonas hydrophila
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CO3, GOL, SO4, ZN

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1X8I \| pdb_00001x8i	Download File View File

Crystal Structure of the Zinc Carbapenemase CphA in Complex with the Antibiotic Biapenem

Garau, G., Dideberg, O.

(2005) J Mol Biology 345: 785-795

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aeromonas hydrophila
Macromolecule	Beta-lactamase (protein)
Unique Ligands	BMH, GOL, SO4, ZN

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2BEQ \| pdb_00002beq	Download File View File

Structure of a Proteolytically Resistant Core from the Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein

Supekar, V.M., Bruckmann, C., Ingallinella, P., Bianchi, E., Pessi, A., Carfi, A.

(2004) Proc Natl Acad Sci U S A 101: 17958

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Spike glycoprotein (protein)

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2BEZ \| pdb_00002bez	Download File View File

Structure of a proteolitically resistant core from the severe acute respiratory syndrome coronavirus S2 fusion protein

Supekar, V.M., Bruckmann, C., Ingallinella, P., Bianchi, E., Pessi, A., Carfi, A.

(2004) Proc Natl Acad Sci U S A 101: 17958

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	GOL

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2BMI \| pdb_00002bmi	Download File View File

METALLO-BETA-LACTAMASE

Carfi, A., Duee, E., Dideberg, O.

(1998) Acta Crystallogr D Biol Crystallogr 54: 45-57

Released	1998-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides fragilis
Macromolecule	PROTEIN (CLASS B BETA-LACTAMASE) (protein)
Unique Ligands	NA, ZN

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2BRK \| pdb_00002brk	Download File View File

Crystal structure of Hepatitis C virus polymerase in complex with an allosteric inhibitor (compound 1)

Di Marco, S., Volpari, C., Carfi, A.

(2005) J Biological Chem 280: 29765

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hepacivirus hominis
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	CMF, MN

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2BRL \| pdb_00002brl	Download File View File

Crystal structure of Hepatitis C virus polymerase in complex with an allosteric inhibitor (compound 2)

Di Marco, S., Volpari, C., Carfi, A.

(2005) J Biological Chem 280: 29765

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Hepacivirus hominis
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN, POO

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2C36 \| pdb_00002c36	Download File View File

Structure of unliganded HSV gD reveals a mechanism for receptor- mediated activation of virus entry

Krummenacher, C., Supekar, V.M., Whitbeck, J.C., Lazear, E., Connolly, S.A., Eisenberg, R.J., Cohen, G.H., Wiley, D.C., Carfi, A.

(2005) EMBO J 24: 4144-4153

Released	2005-11-23
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	GLYCOPROTEIN D HSV-1 (protein)
Unique Ligands	CL, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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2C3A \| pdb_00002c3a	Download File View File

Structure of unliganded HSV gD reveals a mechanism for receptor- mediated activation of virus entry

Krummenacher, C., Supekar, V.M., Whitbeck, J.C., Lazear, E., Connolly, S.A., Eisenberg, R.J., Cohen, G.H., Wiley, D.C., Carfi, A.

(2005) EMBO J 24: 4144

Released	2005-12-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	GLYCOPROTEIN D (protein)
Unique Ligands	CL, NA, ZN
Unique branched monosaccharides	NAG

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2CMR \| pdb_00002cmr	Download File View File

Crystal structure of the HIV-1 neutralizing antibody D5 Fab bound to the gp41 inner-core mimetic 5-helix

Luftig, M.A., Mattu, M., Di Giovine, P., Geleziunas, R., Hrin, R., Barbato, G., Bianchi, E., Miller, M.D., Pessi, A., Carfi, A.

(2006) Nat Struct Mol Biol 13: 740

Released	2006-10-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	D5 (protein) TRANSMEMBRANE GLYCOPROTEIN (protein)
Unique Ligands	GOL

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2FM6 \| pdb_00002fm6	Download File View File

Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (native form)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

(2008) J Mol Biology 375: 257-269

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	GOL, SO4, ZN

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2FU6 \| pdb_00002fu6	Download File View File

Zinc-beta-lactamase l1 from stenotrophomonas maltophilia (apo form)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	GOL, SO4

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2FU7 \| pdb_00002fu7	Download File View File

Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (Cu-substituted form)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

(2008) J Mol Biology 375: 257-269

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	CU, GOL, PHN, SO4

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2FU8 \| pdb_00002fu8	Download File View File

Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (d-captopril complex)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

(2008) J Mol Biology 375: 257-269

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	GOL, MCO, SO4, ZN

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2FU9 \| pdb_00002fu9	Download File View File

Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (mp2 inhibitor complex)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

(2008) J Mol Biology 375: 257-269

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	GOL, MP2, SO4, ZN

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2GFJ \| pdb_00002gfj	Download File View File

Crystal structure of the zinc-beta-lactamase L1 from stenotrophomonas maltophilia (inhibitor 1)

Nauton, L., Garau, G., Kahn, R., Dideberg, O.

(2008) J Mol Biology 375: 257-269

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	SO4, VI, ZN

1 to 25 of 78 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BMC | pdb_00001bmc

1BVT | pdb_00001bvt

1CQ3 | pdb_00001cq3

1DXK | pdb_00001dxk

1EBO | pdb_00001ebo

1FYT | pdb_00001fyt

1JMA | pdb_00001jma

1L2G | pdb_00001l2g

1X8G | pdb_00001x8g

1X8H | pdb_00001x8h

1X8I | pdb_00001x8i

2BEQ | pdb_00002beq

2BEZ | pdb_00002bez

2BMI | pdb_00002bmi

2BRK | pdb_00002brk

2BRL | pdb_00002brl

2C36 | pdb_00002c36

2C3A | pdb_00002c3a

2CMR | pdb_00002cmr

2FM6 | pdb_00002fm6

2FU6 | pdb_00002fu6

2FU7 | pdb_00002fu7

2FU8 | pdb_00002fu8

2FU9 | pdb_00002fu9

2GFJ | pdb_00002gfj