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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chen, T.Y."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (4)
	Mycobacterium tuberculosis H37Rv (4)
	Saccharomyces cerevisiae S288C (4)
	Xanthomonas campestris pv. campestris str. ATCC 33913 (4)
	Epinephelus coioides nervous necrosis virus (3)
	Streptomyces coeruleorubidus (3)
	Bacteroides fragilis (1)
	Mycobacterium marinum M (1)
	Mycobacterium tuberculosis (1)
	Mycobacterium tuberculosis H37Ra (1)

More...

Taxonomy

	Bacteria (17)
	Eukaryota (6)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (22)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (13)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (11)
	Oxidoreductases (5)
	Hydrolases (4)

Symmetry Type

	Asymmetric (14)
	Cyclic (10)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (1)
	Alpha and beta proteins (a+b) (2)
	All beta proteins (1)

AllSelected

1 to 25 of 26 Structures

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2G7M \| pdb_00002g7m	Download File View File

Crystal structure of B. fragilis N-succinylornithine transcarbamylase P90E mutant complexed with carbamoyl phosphate and N-acetylnorvaline

Shi, D., Yu, X., Roth, L., Morizono, H., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacteroides fragilis
Macromolecule	putative ornithine carbamoyltransferase (protein)
Unique Ligands	AN0, CP, SO4

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2MR9 \| pdb_00002mr9	Download File View File

NMR structure of UBA domain of DNA-damage-inducible 1 protein (Ddi1)

Zhang, D., Fushman, D.

(2015) Structure 23: 542-557

Released	2015-02-04
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein)

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2MRO \| pdb_00002mro	Download File View File

Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)

Zhang, D., Fushman, D.

(2015) Structure 23: 542-557

Released	2015-02-04
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein) Polyubiquitin-B (protein)

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2MRP \| pdb_00002mrp	Download File View File

NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1 protein (Ddi1)

Nowicka, U., Fushman, D., Chen, T.

(2015) Structure 23: 542-557

Released	2015-03-11
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein)

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2MWS \| pdb_00002mws	Download File View File

Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1

Fushman, D., Nowicka, U., Walker, O.

(2015) Structure 23: 542-557

Released	2015-03-25
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	DNA damage-inducible protein 1 (protein) Ubiquitin (protein)

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3L02 \| pdb_00003l02	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase E92A mutant complexed with carbamyl phosphate and N-succinyl-L-norvaline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	CP, SN0, SO4

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3L04 \| pdb_00003l04	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase E92P mutant complexed with carbamyl phosphate and N-succinyl-L-norvaline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	CP, SN0, SO4

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3L05 \| pdb_00003l05	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase E92S mutant complexed with carbamyl phosphate and N-succinyl-L-norvaline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	CP, SN0, SO4

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3L06 \| pdb_00003l06	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase E92V mutant complexed with carbamyl phosphate and N-succinyl-L-norvaline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	CP, SN0, SO4

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3OUV \| pdb_00003ouv	Download File View File

SeMet Derivative of L512M mutant of PASTA domain 3 of Mycobacterium tuberculosis PknB

Prigozhin, D.M., Chen, T.Y., Alber, T.

(2016) J Biological Chem 291: 22961-22969

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Serine/threonine protein kinase (protein)

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4RFT \| pdb_00004rft	Download File View File

T=1 subviral particle of Grouper nervous necrosis virus capsid protein deletion mutant (delta 1-34 & 218-338)

Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.

(2015) PLoS Pathog 11: e1005203-e1005203

Released	2015-10-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Epinephelus coioides nervous necrosis virus
Macromolecule	Coat protein (protein)

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4RFU \| pdb_00004rfu	Download File View File

Crystal structure of truncated P-domain from Grouper nervous necrosis virus capsid protein at 1.2A

Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.

(2015) PLoS Pathog 11: e1005203-e1005203

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Epinephelus coioides nervous necrosis virus
Macromolecule	Coat protein (protein)
Unique Ligands	CA, GOL, PEG

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4WIZ \| pdb_00004wiz	Download File View File

Crystal structure of Grouper nervous necrosis virus-like particle at 3.6A

Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.

(2015) PLoS Pathog 11: e1005203-e1005203

Released	2015-10-07
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Epinephelus coioides nervous necrosis virus
Macromolecule	Coat protein (protein)
Unique Ligands	CA

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5B73 \| pdb_00005b73	Download File View File

Crystal structure of human ZMYND8 PHD-Bromo-PWWP domain

Li, H., Li, Y., Zheng, X.

(2016) Mol Cell 63: 470-484

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Protein kinase C-binding protein 1 (protein)
Unique Ligands	ZN

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5E0Y \| pdb_00005e0y	Download File View File

Crystal Structure of PASTA Domain 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)
Unique Ligands	ZN

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5E0Z \| pdb_00005e0z	Download File View File

Crystal Structure of PASTA Domains 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)

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5E10 \| pdb_00005e10	Download File View File

Crystal Structure of PASTA Domains 1 and 2 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)

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5E12 \| pdb_00005e12	Download File View File

Crystal Structure of PASTA Domains 2, 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)
Unique Ligands	FLC

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6L6W \| pdb_00006l6w	Download File View File

The structure of ScoE with intermediate

Chen, T.Y., Chen, J., Zhou, J., Chang, W.

(2020) Angew Chem Int Ed Engl 59: 7367-7371

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Streptomyces coeruleorubidus
Macromolecule	ScoE protein (protein)
Unique Ligands	E79, FE2, FMT

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6L6X \| pdb_00006l6x	Download File View File

The structure of ScoE with substrate

Chen, T.Y., Chen, J., Zhou, J., Chang, W.

(2020) Angew Chem Int Ed Engl 59: 7367-7371

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Streptomyces coeruleorubidus
Macromolecule	ScoE protein (protein)
Unique Ligands	7UC, FE2, TAR

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6L86 \| pdb_00006l86	Download File View File

The structure of SfaA

Chen, T.Y., Chen, J., Zhou, J., Chang, W.

(2020) Angew Chem Int Ed Engl 59: 7367-7371

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Streptomyces thioluteus
Macromolecule	Taurine catabolism dioxygenase (protein)
Unique Ligands	FE2, LMR, MLT

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6MLC \| pdb_00006mlc	Download File View File

PHD6 domain of MLL3 in complex with histone H4

Dong, A., Liu, Y., Qin, S., Lei, M., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2019) Nat Commun 10: 36-36

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Histone-lysine N-methyltransferase 2C (protein)
Unique Ligands	GOL, UNX, ZN

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7SCP \| pdb_00007scp	Download File View File

The crystal structure of ScoE in complex with intermediate

Cha, L., Chen, J., Zhou, J., Chang, W.

(2022) ACS Catal 12: 2270-2279

Released	2022-03-23
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Streptomyces coeruleorubidus
Macromolecule	ScoE protein (protein)
Unique Ligands	8S6, EDO, FE2, GOL